Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000003

Orthogroup ID

OG0000729

Physical Location & Seq

Genomic Coordinates Forward (+)

36008767 .. 36009332

Gene Structure 566 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug03G0326300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 369 bp

ATGCATCATTATAAAAAGAAGCTGTGCAAGTTCCCGAAGAATCATCCGATTATCTACACTACCAACCTACTTCAATCATATCCTGCTCCATCTATCTGCTGCAAAGCCAATAACCAAAGAAGCAAGCACAGCAAAATGACTGGTGGTATTGGAATTCCAATATGCGTGCAGTGCGGAACGCACAGCAACCCATGCCGGTGCAAGGTGGTTGGCCCTACCTTGGGGTTCCTGGCCTTCGCCGCGGCGGCGATCGTGGAGTGGCCTGTGGGGGCTCTTGTCTACTGCTTCCGCCACATGAAGGGTCGCCGAATTATGGCTCATCCGGCCACCGTTGTTTACCCCAAAGTTACCAATTCCATTCCCATTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0003938 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006139 GO:0006163 GO:0006164 GO:0006183 GO:0006725 GO:0006753 GO:0006793 GO:0006796 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009116 GO:0009117 GO:0009119 GO:0009141 GO:0009142 GO:0009144 GO:0009145 GO:0009150 GO:0009152 GO:0009163 GO:0009165 GO:0009199 GO:0009201 GO:0009205 GO:0009206 GO:0009259 GO:0009260 GO:0009719 GO:0009725 GO:0009735 GO:0009987 GO:0010033 GO:0016491 GO:0016614 GO:0016616 GO:0018130 GO:0019438 GO:0019637 GO:0019693 GO:0034404 GO:0034641 GO:0034654 GO:0042221 GO:0042278 GO:0042451 GO:0042455 GO:0044237 GO:0044238 GO:0044249 GO:0044271 GO:0044281 GO:0044283 GO:0044424 GO:0044444 GO:0044464 GO:0046039 GO:0046128 GO:0046129 GO:0046390 GO:0046483 GO:0050896 GO:0055086 GO:0055114 GO:0071704 GO:0072521 GO:0072522 GO:0090407 GO:1901068 GO:1901070 GO:1901135 GO:1901137 GO:1901293 GO:1901360 GO:1901362 GO:1901564 GO:1901566 GO:1901576 GO:1901657 GO:1901659

KEGG Pathways

Metabolic & Signaling

ko00230 ko00983 ko01100 ko01110 map00230 map00983 map01100 map01110

Pfam Domains

Protein Families

IMPDH

Protein Analysis

122

Amino Acids

13.48

Weight (kDa)

9.88

Isoelectric Point (pI)

31.3

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000729)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G16350 AT1G79470
fragaria_vesca	FvH4_3g14430 FvH4_3g14430
malus_domestica	MD05G1237000.v1.1 MD05G1237500.v1.1 MD10G1213800.v1.1
prunus_persica	Prupe.4G129200_v2.0.a1 Prupe.4G129200_v2.0.a1
pyrus_communis	pycom05g21380 pycom10g18050 pycom10g18080 pycom10g18140 pycom10g18190
rosa_chinensis	RchiOBHm_Chr1g0350061 RchiOBHm_Chr2g0101951 RchiOBHm_Chr2g0155871 RchiOBHm_Chr3g0468611 RchiOBHm_Chr3g0493461 RchiOBHm_Chr4g0401281 RchiOBHm_Chr4g0402021 RchiOBHm_Chr5g0023561 RchiOBHm_Chr5g0023571 RchiOBHm_Chr5g0023741 RchiOBHm_Chr7g0231801 RchiOBHm_Chr7g0234111 RchiOBHm_Chr7g0238791 RchiOBHm_Chr7g0239601
rosa_laevigata	RLG00000032733
rosa_multiflora	Rmu_co8005014.1_g000001 Rmu_co8223904.1_g000001 Rmu_sc0000087.1_g000007 Rmu_sc0000110.1_g000028 Rmu_sc0000172.1_g000003 Rmu_sc0000689.1_g000019 Rmu_sc0000870.1_g000014 Rmu_sc0001372.1_g000011 Rmu_sc0001516.1_g000086 Rmu_sc0001653.1_g000008 Rmu_sc0002862.1_g000001 Rmu_sc0002862.1_g000002 Rmu_sc0008652.1_g000002 Rmu_sc0011789.1_g000002 Rmu_sc0013252.1_g000001 Rmu_sc0017256.1_g000001 Rmu_sc0017907.1_g000002 Rmu_sc0017907.1_g000003 Rmu_sc0018737.1_g000003 Rmu_sc0020536.1_g000001 Rmu_sc0025127.1_g000001 Rmu_sc0028608.1_g000001 Rmu_sc0029703.1_g000001 Rmu_ssc0000027.1_g000015
rosa_roxburghii	Rroxscaffold_1G00055450
rosa_rugosa	Rorug03G0326300 Rorug05G0079400 Rorug05G0352300
rosa_samantha	Rh5AG167200 Rh5AG169300 Rh5BG166700 Rh5CG181100 Rh5CG182300 Rh5DG168600 Rh6BG409700
rosa_wichuraiana	Rw0G001580 Rw0G004990 Rw1G017410 Rw2G027840 Rw4G002740 Rw5G015190 Rw5G015310 Rw7G033830

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	12
AccI	GTMKAC	1 cut(s)	279
AccII	CGCG	1 cut(s)	242
AciI	CCGC	5 cut(s)	174, 240, 242, 245, 289
AcoI	YGGCCR	1 cut(s)	324
AcsI	RAATTY	1 cut(s)	153
AfiI	CCNNNNNNNGG	5 cut(s)	202, 220, 221, 298, 313
AgsI	TTSAA	1 cut(s)	74
AjnI	CCWGG	1 cut(s)	228
AluBI	AGCT	1 cut(s)	22
AluI	AGCT	1 cut(s)	22
AoxI	GGCC	4 cut(s)	211, 231, 260, 324
ApeKI	GCWGC	1 cut(s)	99
ApoI	RAATTY	1 cut(s)	153
AspS9I	GGNCC	1 cut(s)	212
BanII	GRGCYC	1 cut(s)	274
BbvI	GCAGC	1 cut(s)	86
BccI	CCATC	1 cut(s)	97
BciT130I	CCWGG	1 cut(s)	230
BglI	GCCNNNNNGGC	1 cut(s)	245
BisI	GCNGC	4 cut(s)	100, 240, 243, 246
BlsI	GCNGC	4 cut(s)	101, 241, 244, 247
Bme1390I	CCNGG	1 cut(s)	230
BmgT120I	GGNCC	1 cut(s)	212
BmiI	GGNNCC	1 cut(s)	227
BmrFI	CCNGG	1 cut(s)	230
BmsI	GCATC	1 cut(s)	13
BsaJI	CCNNGG	2 cut(s)	219, 240
Bsc4I	CCNNNNNNNGG	5 cut(s)	202, 220, 221, 298, 313
Bse118I	RCCGGY	1 cut(s)	195
Bse1I	ACTGG	1 cut(s)	145
BseBI	CCWGG	1 cut(s)	230
BseDI	CCNNGG	2 cut(s)	219, 240
BseGI	GGATG	2 cut(s)	43, 319
BseLI	CCNNNNNNNGG	5 cut(s)	202, 220, 221, 298, 313
BseNI	ACTGG	1 cut(s)	145
BseXI	GCAGC	1 cut(s)	86
BsgI	GTGCAG	1 cut(s)	188
Bsh1236I	CGCG	1 cut(s)	242
Bsh1285I	CGRYCG	1 cut(s)	252
BshFI	GGCC	4 cut(s)	213, 233, 262, 326
BsiEI	CGRYCG	1 cut(s)	252
BsiSI	CCGG	2 cut(s)	196, 323
BslI	CCNNNNNNNGG	5 cut(s)	202, 220, 221, 298, 313
BsnI	GGCC	4 cut(s)	213, 233, 262, 326
Bsp1286I	GDGCHC	1 cut(s)	274
Bsp143I	GATC	1 cut(s)	249
BspACI	CCGC	5 cut(s)	174, 240, 242, 245, 289
BspANI	GGCC	4 cut(s)	213, 233, 262, 326
BspFNI	CGCG	1 cut(s)	242
BspLI	GGNNCC	1 cut(s)	227
BsrFI	RCCGGY	1 cut(s)	195
BsrI	ACTGG	1 cut(s)	145
BssAI	RCCGGY	1 cut(s)	195
BssECI	CCNNGG	2 cut(s)	219, 240
BssMI	GATC	1 cut(s)	249
BssT1I	CCWWGG	1 cut(s)	219
Bst2UI	CCWGG	1 cut(s)	230
Bst4CI	ACNGT	1 cut(s)	331
BstAPI	GCANNNNNTGC	1 cut(s)	192
BstC8I	GCNNGC	2 cut(s)	125, 167
BstDSI	CCRYGG	1 cut(s)	240
BstF5I	GGATG	2 cut(s)	43, 319
BstFNI	CGCG	1 cut(s)	242
BstKTI	GATC	1 cut(s)	252
BstMBI	GATC	1 cut(s)	249
BstMCI	CGRYCG	1 cut(s)	252
BstMWI	GCNNNNNNNGC	6 cut(s)	129, 171, 192, 239, 245, 323
BstNI	CCWGG	1 cut(s)	230
BstSCI	CCNGG	1 cut(s)	228
BstUI	CGCG	1 cut(s)	242
BstV1I	GCAGC	1 cut(s)	86
BsuRI	GGCC	4 cut(s)	213, 233, 262, 326
BtgI	CCRYGG	1 cut(s)	240
BtsCI	GGATG	2 cut(s)	43, 319
BtsI	GCAGTG	1 cut(s)	176
BtsIMutI	CAGTG	1 cut(s)	176
Cac8I	GCNNGC	2 cut(s)	125, 167
Cfr10I	RCCGGY	1 cut(s)	195
Cfr13I	GGNCC	1 cut(s)	212
Cfr42I	CCGCGG	1 cut(s)	243
CviAII	CATG	2 cut(s)	192, 295
CviJI	RGCY	8 cut(s)	22, 107, 213, 233, 262, 272, 317, 326
CviKI_1	RGCY	8 cut(s)	22, 107, 213, 233, 262, 272, 317, 326
DpnI	GATC	1 cut(s)	251
DpnII	GATC	1 cut(s)	249
EaeI	YGGCCR	1 cut(s)	324
EciI	GGCGGA	1 cut(s)	278
Eco130I	CCWWGG	1 cut(s)	219
Eco24I	GRGCYC	1 cut(s)	274
EcoRI	GAATTC	1 cut(s)	153
EcoRII	CCWGG	1 cut(s)	228
EcoT14I	CCWWGG	1 cut(s)	219
EcoT22I	ATGCAT	1 cut(s)	6
EcoT38I	GRGCYC	1 cut(s)	274
ErhI	CCWWGG	1 cut(s)	219
FaeI	CATG	2 cut(s)	195, 298
FaiI	YATR	6 cut(s)	12, 79, 163, 193, 296, 314
FatI	CATG	2 cut(s)	191, 294
FblI	GTMKAC	1 cut(s)	279
Fnu4HI	GCNGC	4 cut(s)	100, 240, 243, 246
FokI	GGATG	2 cut(s)	30, 306
FriOI	GRGCYC	1 cut(s)	274
Fsp4HI	GCNGC	4 cut(s)	100, 240, 243, 246
GluI	GCNGC	4 cut(s)	100, 240, 243, 246
HaeIII	GGCC	4 cut(s)	213, 233, 262, 326
HapII	CCGG	2 cut(s)	196, 323
Hin1II	CATG	2 cut(s)	195, 298
HinfI	GANTC	1 cut(s)	40
HpaII	CCGG	2 cut(s)	196, 323
Hpy166II	GTNNAC	2 cut(s)	280, 337
Hpy188I	TCNGA	1 cut(s)	48
Hpy188III	TCNNGA	1 cut(s)	34
Hpy8I	GTNNAC	2 cut(s)	280, 337
HpyAV	CCTTC	2 cut(s)	244, 292
HpyCH4III	ACNGT	1 cut(s)	331
HpyCH4V	TGCA	5 cut(s)	4, 27, 102, 169, 201
HpyF10VI	GCNNNNNNNGC	6 cut(s)	129, 171, 192, 239, 245, 323
Hsp92II	CATG	2 cut(s)	195, 298
KspI	CCGCGG	1 cut(s)	243
Kzo9I	GATC	1 cut(s)	249
LmnI	GCTCC	1 cut(s)	91
LpnPI	CCDG	7 cut(s)	96, 126, 209, 215, 242, 276, 336
Lsp1109I	GCAGC	1 cut(s)	86
LweI	GCATC	1 cut(s)	13
MaeIII	GTNAC	1 cut(s)	346
MalI	GATC	1 cut(s)	251
MboI	GATC	1 cut(s)	249
MboII	GAAGA	1 cut(s)	49
MhlI	GDGCHC	1 cut(s)	274
MluCI	AATT	3 cut(s)	153, 309, 352
Mph1103I	ATGCAT	1 cut(s)	6
MslI	CAYNNNNRTG	1 cut(s)	196
MspA1I	CMGCKG	1 cut(s)	242
MspI	CCGG	2 cut(s)	196, 323
MspR9I	CCNGG	1 cut(s)	230
MvaI	CCWGG	1 cut(s)	230
MvnI	CGCG	1 cut(s)	242
MwoI	GCNNNNNNNGC	6 cut(s)	129, 171, 192, 239, 245, 323
NdeII	GATC	1 cut(s)	249
NlaIII	CATG	2 cut(s)	195, 298
NlaIV	GGNNCC	1 cut(s)	227
NsiI	ATGCAT	1 cut(s)	6
PfeI	GAWTC	1 cut(s)	40
PkrI	GCNGC	4 cut(s)	101, 241, 244, 247
Ple19I	CGATCG	1 cut(s)	252
PsiI	TTATAA	1 cut(s)	12
Psp6I	CCWGG	1 cut(s)	228
PspGI	CCWGG	1 cut(s)	228
PspN4I	GGNNCC	1 cut(s)	227
PspPI	GGNCC	1 cut(s)	212
PvuI	CGATCG	1 cut(s)	252
RseI	CAYNNNNRTG	1 cut(s)	196
SacII	CCGCGG	1 cut(s)	243
SatI	GCNGC	4 cut(s)	100, 240, 243, 246
Sau3AI	GATC	1 cut(s)	249
Sau96I	GGNCC	1 cut(s)	212
ScrFI	CCNGG	1 cut(s)	230
SduI	GDGCHC	1 cut(s)	274
SetI	ASST	4 cut(s)	24, 69, 207, 221
SfaNI	GCATC	1 cut(s)	13
Sfr303I	CCGCGG	1 cut(s)	243
SgrBI	CCGCGG	1 cut(s)	243
SmiMI	CAYNNNNRTG	1 cut(s)	196
Sse9I	AATT	3 cut(s)	153, 309, 352
SsiI	CCGC	5 cut(s)	174, 240, 242, 245, 289
StyD4I	CCNGG	1 cut(s)	228
StyI	CCWWGG	1 cut(s)	219
TaaI	ACNGT	1 cut(s)	331
TasI	AATT	3 cut(s)	153, 309, 352
TauI	GCSGC	3 cut(s)	242, 245, 248
TfiI	GAWTC	1 cut(s)	40
TscAI	CASTG	1 cut(s)	176
TseI	GCWGC	1 cut(s)	99
TspDTI	ATGAA	1 cut(s)	311
TspRI	CASTG	1 cut(s)	176
XapI	RAATTY	1 cut(s)	153
XmiI	GTMKAC	1 cut(s)	279
Zsp2I	ATGCAT	1 cut(s)	6

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.