Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6B

Orthogroup ID

OG0000729

Physical Location & Seq

Genomic Coordinates Reverse (-)

63547621 .. 63548830

Gene Structure 1210 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6BG409700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 345 bp

ATGGTGGGGTACTGGTGGTGGTTTGCGGCGATGGCATACCCAGGCCGGAGTGTAGACGACGGGACAACTACGGAGGAGATTTTCCTCTTCTCTAGGGTTTGTTCTGACTCTCTCGGCAGGGACGACGACGTTGTAAACATTGTGGGGAAGGAGTTTGTGAAGCAGATAAGAGGGTACTCAAAATTGGAGCTCGGGTTGGTTGGACCGGACGGCTCGTGGAGGGTCGGGGCGGAGATAGGGACAAGGGAGTCAGATAAGGAGAGTCTGAAGGAGTTGGTGAAGGCTGGGATTGATGTGGTGGTGTTGGATATCTCACAGATCCAGCTCATGACATTGGTTGTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0003938 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006139 GO:0006163 GO:0006164 GO:0006183 GO:0006725 GO:0006753 GO:0006793 GO:0006796 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009116 GO:0009117 GO:0009119 GO:0009141 GO:0009142 GO:0009144 GO:0009145 GO:0009150 GO:0009152 GO:0009163 GO:0009165 GO:0009199 GO:0009201 GO:0009205 GO:0009206 GO:0009259 GO:0009260 GO:0009719 GO:0009725 GO:0009735 GO:0009987 GO:0010033 GO:0016491 GO:0016614 GO:0016616 GO:0018130 GO:0019438 GO:0019637 GO:0019693 GO:0034404 GO:0034641 GO:0034654 GO:0042221 GO:0042278 GO:0042451 GO:0042455 GO:0044237 GO:0044238 GO:0044249 GO:0044271 GO:0044281 GO:0044283 GO:0044424 GO:0044444 GO:0044464 GO:0046039 GO:0046128 GO:0046129 GO:0046390 GO:0046483 GO:0050896 GO:0055086 GO:0055114 GO:0071704 GO:0072521 GO:0072522 GO:0090407 GO:1901068 GO:1901070 GO:1901135 GO:1901137 GO:1901293 GO:1901360 GO:1901362 GO:1901564 GO:1901566 GO:1901576 GO:1901657 GO:1901659

KEGG Pathways

Metabolic & Signaling

ko00230 ko00983 ko01100 ko01110 map00230 map00983 map01100 map01110

Pfam Domains

Protein Families

IMPDH

Protein Analysis

114

Amino Acids

12.66

Weight (kDa)

4.55

Isoelectric Point (pI)

22.67

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000729)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G16350 AT1G79470
fragaria_vesca	FvH4_3g14430 FvH4_3g14430
malus_domestica	MD05G1237000.v1.1 MD05G1237500.v1.1 MD10G1213800.v1.1
prunus_persica	Prupe.4G129200_v2.0.a1 Prupe.4G129200_v2.0.a1
pyrus_communis	pycom05g21380 pycom10g18050 pycom10g18080 pycom10g18140 pycom10g18190
rosa_chinensis	RchiOBHm_Chr1g0350061 RchiOBHm_Chr2g0101951 RchiOBHm_Chr2g0155871 RchiOBHm_Chr3g0468611 RchiOBHm_Chr3g0493461 RchiOBHm_Chr4g0401281 RchiOBHm_Chr4g0402021 RchiOBHm_Chr5g0023561 RchiOBHm_Chr5g0023571 RchiOBHm_Chr5g0023741 RchiOBHm_Chr7g0231801 RchiOBHm_Chr7g0234111 RchiOBHm_Chr7g0238791 RchiOBHm_Chr7g0239601
rosa_laevigata	RLG00000032733
rosa_multiflora	Rmu_co8005014.1_g000001 Rmu_co8223904.1_g000001 Rmu_sc0000087.1_g000007 Rmu_sc0000110.1_g000028 Rmu_sc0000172.1_g000003 Rmu_sc0000689.1_g000019 Rmu_sc0000870.1_g000014 Rmu_sc0001372.1_g000011 Rmu_sc0001516.1_g000086 Rmu_sc0001653.1_g000008 Rmu_sc0002862.1_g000001 Rmu_sc0002862.1_g000002 Rmu_sc0008652.1_g000002 Rmu_sc0011789.1_g000002 Rmu_sc0013252.1_g000001 Rmu_sc0017256.1_g000001 Rmu_sc0017907.1_g000002 Rmu_sc0017907.1_g000003 Rmu_sc0018737.1_g000003 Rmu_sc0020536.1_g000001 Rmu_sc0025127.1_g000001 Rmu_sc0028608.1_g000001 Rmu_sc0029703.1_g000001 Rmu_ssc0000027.1_g000015
rosa_roxburghii	Rroxscaffold_1G00055450
rosa_rugosa	Rorug03G0326300 Rorug05G0079400 Rorug05G0352300
rosa_samantha	Rh5AG167200 Rh5AG169300 Rh5BG166700 Rh5CG181100 Rh5CG182300 Rh5DG168600 Rh6BG409700
rosa_wichuraiana	Rw0G001580 Rw0G004990 Rw1G017410 Rw2G027840 Rw4G002740 Rw5G015190 Rw5G015310 Rw7G033830

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	247
AccI	GTMKAC	1 cut(s)	54
AciI	CCGC	2 cut(s)	26, 230
AclWI	GGATC	1 cut(s)	313
AcuI	CTGAAG	1 cut(s)	287
AfaI	GTAC	2 cut(s)	11, 176
AjnI	CCWGG	1 cut(s)	40
AluBI	AGCT	2 cut(s)	190, 325
AluI	AGCT	2 cut(s)	190, 325
Alw21I	GWGCWC	1 cut(s)	192
AlwI	GGATC	1 cut(s)	313
Ama87I	CYCGRG	1 cut(s)	191
AoxI	GGCC	1 cut(s)	43
AspS9I	GGNCC	1 cut(s)	203
AsuHPI	GGTGA	1 cut(s)	289
AvaI	CYCGRG	1 cut(s)	191
AvaII	GGWCC	1 cut(s)	203
BanII	GRGCYC	1 cut(s)	192
BauI	CACGAG	1 cut(s)	214
Bbv12I	GWGCWC	1 cut(s)	192
BccI	CCATC	1 cut(s)	25
BceAI	ACGGC	1 cut(s)	226
BciT130I	CCWGG	1 cut(s)	42
BfaI	CTAG	1 cut(s)	93
BisI	GCNGC	1 cut(s)	27
BlsI	GCNGC	1 cut(s)	28
Bme1390I	CCNGG	1 cut(s)	42
Bme18I	GGWCC	1 cut(s)	203
BmeT110I	CYCGRG	1 cut(s)	191
BmgT120I	GGNCC	1 cut(s)	203
BmrFI	CCNGG	1 cut(s)	42
BsaJI	CCNNGG	1 cut(s)	40
BsaWI	WCCGGW	1 cut(s)	205
BsaXI	ACNNNNNCTCC	2 cut(s)	179, 209
Bse1I	ACTGG	1 cut(s)	17
BseBI	CCWGG	1 cut(s)	42
BseDI	CCNNGG	1 cut(s)	40
BseNI	ACTGG	1 cut(s)	17
BseRI	GAGGAG	1 cut(s)	89
BseYI	CCCAGC	1 cut(s)	284
BshFI	GGCC	1 cut(s)	45
BsiHKAI	GWGCWC	1 cut(s)	192
BsiHKCI	CYCGRG	1 cut(s)	191
BsiSI	CCGG	2 cut(s)	46, 206
BslFI	GGGAC	3 cut(s)	76, 134, 253
BsmFI	GGGAC	3 cut(s)	76, 134, 253
BsnI	GGCC	1 cut(s)	45
BsoBI	CYCGRG	1 cut(s)	191
Bsp1286I	GDGCHC	1 cut(s)	192
Bsp143I	GATC	1 cut(s)	318
BspACI	CCGC	2 cut(s)	26, 230
BspANI	GGCC	1 cut(s)	45
BspHI	TCATGA	1 cut(s)	327
BspPI	GGATC	1 cut(s)	313
BsrI	ACTGG	1 cut(s)	17
BssECI	CCNNGG	1 cut(s)	40
BssMI	GATC	1 cut(s)	318
BssSI	CACGAG	1 cut(s)	214
Bst2BI	CACGAG	1 cut(s)	214
Bst2UI	CCWGG	1 cut(s)	42
Bst6I	CTCTTC	1 cut(s)	92
BstKTI	GATC	1 cut(s)	321
BstMBI	GATC	1 cut(s)	318
BstMWI	GCNNNNNNNGC	1 cut(s)	32
BstNI	CCWGG	1 cut(s)	42
BstSCI	CCNGG	1 cut(s)	40
BstX2I	RGATCY	1 cut(s)	318
BstYI	RGATCY	1 cut(s)	318
BsuRI	GGCC	1 cut(s)	45
BtgZI	GCGATG	1 cut(s)	44
CciI	TCATGA	1 cut(s)	327
Cfr13I	GGNCC	1 cut(s)	203
Csp6I	GTAC	2 cut(s)	10, 175
CviAII	CATG	1 cut(s)	328
CviJI	RGCY	5 cut(s)	45, 190, 213, 284, 325
CviKI_1	RGCY	5 cut(s)	45, 190, 213, 284, 325
CviQI	GTAC	2 cut(s)	10, 175
DpnI	GATC	1 cut(s)	320
DpnII	GATC	1 cut(s)	318
DrdI	GACNNNNNNGTC	1 cut(s)	247
DseDI	GACNNNNNNGTC	1 cut(s)	247
Eam1104I	CTCTTC	1 cut(s)	92
EarI	CTCTTC	1 cut(s)	92
EciI	GGCGGA	1 cut(s)	245
Ecl136II	GAGCTC	1 cut(s)	190
Eco24I	GRGCYC	1 cut(s)	192
Eco32I	GATATC	1 cut(s)	310
Eco47I	GGWCC	1 cut(s)	203
Eco53kI	GAGCTC	1 cut(s)	190
Eco57I	CTGAAG	1 cut(s)	287
Eco88I	CYCGRG	1 cut(s)	191
EcoICRI	GAGCTC	1 cut(s)	190
EcoRII	CCWGG	1 cut(s)	40
EcoRV	GATATC	1 cut(s)	310
EcoT38I	GRGCYC	1 cut(s)	192
FaeI	CATG	1 cut(s)	331
FaiI	YATR	2 cut(s)	37, 329
FaqI	GGGAC	3 cut(s)	76, 134, 253
FatI	CATG	1 cut(s)	327
FblI	GTMKAC	1 cut(s)	54
Fnu4HI	GCNGC	1 cut(s)	27
FriOI	GRGCYC	1 cut(s)	192
Fsp4HI	GCNGC	1 cut(s)	27
FspBI	CTAG	1 cut(s)	93
GluI	GCNGC	1 cut(s)	27
GsaI	CCCAGC	1 cut(s)	288
HaeIII	GGCC	1 cut(s)	45
HapII	CCGG	2 cut(s)	46, 206
Hin1II	CATG	1 cut(s)	331
HinfI	GANTC	3 cut(s)	107, 248, 262
HpaII	CCGG	2 cut(s)	46, 206
HphI	GGTGA	1 cut(s)	289
Hpy166II	GTNNAC	2 cut(s)	55, 136
Hpy188I	TCNGA	3 cut(s)	106, 253, 267
Hpy188III	TCNNGA	1 cut(s)	328
Hpy8I	GTNNAC	2 cut(s)	55, 136
Hpy99I	CGWCG	3 cut(s)	62, 128, 131
HpyAV	CCTTC	3 cut(s)	142, 262, 274
HpyCH4IV	ACGT	1 cut(s)	129
HpyF10VI	GCNNNNNNNGC	1 cut(s)	32
HpySE526I	ACGT	1 cut(s)	129
Hsp92II	CATG	1 cut(s)	331
Kzo9I	GATC	1 cut(s)	318
LmnI	GCTCC	1 cut(s)	187
LpnPI	CCDG	7 cut(s)	27, 54, 59, 103, 219, 270, 335
MaeI	CTAG	1 cut(s)	93
MaeII	ACGT	1 cut(s)	129
MalI	GATC	1 cut(s)	320
MboI	GATC	1 cut(s)	318
MboII	GAAGA	1 cut(s)	79
MflI	RGATCY	1 cut(s)	318
MhlI	GDGCHC	1 cut(s)	192
MluCI	AATT	1 cut(s)	182
MlyI	GAGTC	3 cut(s)	101, 257, 271
MmeI	TCCRAC	2 cut(s)	181, 285
MnlI	CCTC	4 cut(s)	67, 95, 164, 213
MspI	CCGG	2 cut(s)	46, 206
MspR9I	CCNGG	1 cut(s)	42
MvaI	CCWGG	1 cut(s)	42
MwoI	GCNNNNNNNGC	1 cut(s)	32
NdeII	GATC	1 cut(s)	318
NlaIII	CATG	1 cut(s)	331
NmeAIII	GCCGAG	1 cut(s)	93
PagI	TCATGA	1 cut(s)	327
PcsI	WCGNNNNNNNCGW	1 cut(s)	120
PkrI	GCNGC	1 cut(s)	28
PleI	GAGTC	3 cut(s)	101, 256, 270
PpsI	GAGTC	3 cut(s)	101, 256, 270
Psp124BI	GAGCTC	1 cut(s)	192
Psp6I	CCWGG	1 cut(s)	40
PspFI	CCCAGC	1 cut(s)	284
PspGI	CCWGG	1 cut(s)	40
PspPI	GGNCC	1 cut(s)	203
PsuI	RGATCY	1 cut(s)	318
RsaI	GTAC	2 cut(s)	11, 176
RsaNI	GTAC	2 cut(s)	10, 175
SacI	GAGCTC	1 cut(s)	192
SatI	GCNGC	1 cut(s)	27
Sau3AI	GATC	1 cut(s)	318
Sau96I	GGNCC	1 cut(s)	203
SchI	GAGTC	3 cut(s)	101, 257, 271
ScrFI	CCNGG	1 cut(s)	42
SduI	GDGCHC	1 cut(s)	192
SetI	ASST	3 cut(s)	132, 192, 327
SinI	GGWCC	1 cut(s)	203
Sse9I	AATT	1 cut(s)	182
SsiI	CCGC	2 cut(s)	26, 230
SspMI	CTAG	1 cut(s)	93
SstI	GAGCTC	1 cut(s)	192
StyD4I	CCNGG	1 cut(s)	40
TaiI	ACGT	1 cut(s)	132
TasI	AATT	1 cut(s)	182
TauI	GCSGC	1 cut(s)	29
TspGWI	ACGGA	1 cut(s)	86
VpaK11BI	GGWCC	1 cut(s)	203
XmiI	GTMKAC	1 cut(s)	54
XspI	CTAG	1 cut(s)	93

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.