Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0000729

Physical Location & Seq

Genomic Coordinates Forward (+)

14579245 .. 14580041

Gene Structure 797 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ43449

Sequence Viewer

CDS Protein Promoter (2k)

Length: 741 bp

ATGCAGTACACGGAGGGTGAGCACCACCGGCACCACCGCAGTCGAGGCATCGGCATCCTCCACTCCAACACCGCCAAGGTCAGATCCATCAAGGCCCGCAGCGTCCCCCTCCTCTCCGCCCCCGTCTTCATGTCCCCCGGAGACCGCATCCACAACGATGACGTTTTCGACTACGACGTCAATCCCTACGTCCTCGTCACCTGGTCTGGCGCCCCCAGCTCCAAGATTTTGGGCTACATGGCGAGCCGCGATTGGGTGAAGCTGGCGGACAAGGAGGTCAAGATTTACGATTACATGATCAGCTGTAAGGACATGGTTTTTCCTTGGAGCTCCGATTTGGGGAAGATTGAGGAGTTCATGGCGGAGAAAGTCCGACGTGGAGCGGATCAAGGGGTACCCGAAGTTGGGGGTAGGGTCGGTTGGCCCGACGGGTCGTGGAAGGTCGGGGCGGCGATAAGGATGAGGGAGTCGGATAAGGAGAGATTAGAGGAGTTGGTGAAGGCTGGGATTGATGTGGTGGTGTTGGATAGCTCACAGGGGAACTCCATTTATCAGATTGAGTTGATCAAGTACATCAAGAAAATGTACTCAGATTTGGATGTGGTTTGTGGGAATGTGTTGACTGTGAGTCAGGCGCAGAATTTGATTCAGGCTGGTGTTGATGGGTTGAGGGTTGGGATGGGGTCTGGCTCCATTTGTACTACTCAAGAGGTTTGGGTCGGCGGCAGGGGACAGGTATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0003938 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006139 GO:0006163 GO:0006164 GO:0006183 GO:0006725 GO:0006753 GO:0006793 GO:0006796 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009116 GO:0009117 GO:0009119 GO:0009141 GO:0009142 GO:0009144 GO:0009145 GO:0009150 GO:0009152 GO:0009163 GO:0009165 GO:0009199 GO:0009201 GO:0009205 GO:0009206 GO:0009259 GO:0009260 GO:0009719 GO:0009725 GO:0009735 GO:0009987 GO:0010033 GO:0016491 GO:0016614 GO:0016616 GO:0018130 GO:0019438 GO:0019637 GO:0019693 GO:0034404 GO:0034641 GO:0034654 GO:0042221 GO:0042278 GO:0042451 GO:0042455 GO:0044237 GO:0044238 GO:0044249 GO:0044271 GO:0044281 GO:0044283 GO:0044424 GO:0044444 GO:0044464 GO:0046039 GO:0046128 GO:0046129 GO:0046390 GO:0046483 GO:0050896 GO:0055086 GO:0055114 GO:0071704 GO:0072521 GO:0072522 GO:0090407 GO:1901068 GO:1901070 GO:1901135 GO:1901137 GO:1901293 GO:1901360 GO:1901362 GO:1901564 GO:1901566 GO:1901576 GO:1901657 GO:1901659

KEGG Pathways

Metabolic & Signaling

ko00230 ko00983 ko01100 ko01110 map00230 map00983 map01100 map01110

Pfam Domains

Protein Families

IMPDH

Protein Analysis

246

Amino Acids

27.29

Weight (kDa)

6.6

Isoelectric Point (pI)

42.95

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
IMPDH	PF00478	142 - 246	1.1e-34	IMP dehydrogenase / GMP reductase domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000729)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G16350 AT1G79470
fragaria_vesca	FvH4_3g14430 FvH4_3g14430
malus_domestica	MD05G1237000.v1.1 MD05G1237500.v1.1 MD10G1213800.v1.1
prunus_persica	Prupe.4G129200_v2.0.a1 Prupe.4G129200_v2.0.a1
pyrus_communis	pycom05g21380 pycom10g18050 pycom10g18080 pycom10g18140 pycom10g18190
rosa_chinensis	RchiOBHm_Chr1g0350061 RchiOBHm_Chr2g0101951 RchiOBHm_Chr2g0155871 RchiOBHm_Chr3g0468611 RchiOBHm_Chr3g0493461 RchiOBHm_Chr4g0401281 RchiOBHm_Chr4g0402021 RchiOBHm_Chr5g0023561 RchiOBHm_Chr5g0023571 RchiOBHm_Chr5g0023741 RchiOBHm_Chr7g0231801 RchiOBHm_Chr7g0234111 RchiOBHm_Chr7g0238791 RchiOBHm_Chr7g0239601
rosa_laevigata	RLG00000032733
rosa_multiflora	Rmu_co8005014.1_g000001 Rmu_co8223904.1_g000001 Rmu_sc0000087.1_g000007 Rmu_sc0000110.1_g000028 Rmu_sc0000172.1_g000003 Rmu_sc0000689.1_g000019 Rmu_sc0000870.1_g000014 Rmu_sc0001372.1_g000011 Rmu_sc0001516.1_g000086 Rmu_sc0001653.1_g000008 Rmu_sc0002862.1_g000001 Rmu_sc0002862.1_g000002 Rmu_sc0008652.1_g000002 Rmu_sc0011789.1_g000002 Rmu_sc0013252.1_g000001 Rmu_sc0017256.1_g000001 Rmu_sc0017907.1_g000002 Rmu_sc0017907.1_g000003 Rmu_sc0018737.1_g000003 Rmu_sc0020536.1_g000001 Rmu_sc0025127.1_g000001 Rmu_sc0028608.1_g000001 Rmu_sc0029703.1_g000001 Rmu_ssc0000027.1_g000015
rosa_roxburghii	Rroxscaffold_1G00055450
rosa_rugosa	Rorug03G0326300 Rorug05G0079400 Rorug05G0352300
rosa_samantha	Rh5AG167200 Rh5AG169300 Rh5BG166700 Rh5CG181100 Rh5CG182300 Rh5DG168600 Rh6BG409700
rosa_wichuraiana	Rw0G001580 Rw0G004990 Rw1G017410 Rw2G027840 Rw4G002740 Rw5G015190 Rw5G015310 Rw7G033830

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	2 cut(s)	176, 275
AatII	GACGTC	1 cut(s)	180
Acc65I	GGTACC	1 cut(s)	394
AccB1I	GGYRCC	3 cut(s)	30, 209, 394
AccBSI	CCGCTC	1 cut(s)	383
AccII	CGCG	1 cut(s)	249
AclWI	GGATC	2 cut(s)	78, 393
AcsI	RAATTY	1 cut(s)	640
AcyI	GRCGYC	2 cut(s)	177, 210
AfaI	GTAC	5 cut(s)	8, 396, 572, 587, 700
AfiI	CCNNNNNNNGG	4 cut(s)	253, 339, 404, 405
AhdI	GACNNNNNGTC	1 cut(s)	627
AjiI	CACGTC	1 cut(s)	377
AjnI	CCWGG	1 cut(s)	200
AluBI	AGCT	5 cut(s)	219, 262, 303, 330, 531
AluI	AGCT	5 cut(s)	219, 262, 303, 330, 531
Alw21I	GWGCWC	2 cut(s)	24, 332
Alw26I	GTCTC	1 cut(s)	135
AlwI	GGATC	2 cut(s)	78, 393
AoxI	GGCC	2 cut(s)	93, 422
ApeKI	GCWGC	1 cut(s)	99
ApoI	RAATTY	1 cut(s)	640
Asp718I	GGTACC	1 cut(s)	394
AspLEI	GCGC	2 cut(s)	212, 637
AspS9I	GGNCC	2 cut(s)	94, 423
AsuC2I	CCSGG	1 cut(s)	138
AsuHPI	GGTGA	4 cut(s)	29, 190, 268, 508
BanI	GGYRCC	3 cut(s)	30, 209, 394
BanII	GRGCYC	1 cut(s)	332
BbsI	GAAGAC	1 cut(s)	118
Bbv12I	GWGCWC	2 cut(s)	24, 332
BbvI	GCAGC	1 cut(s)	111
BccI	CCATC	3 cut(s)	95, 656, 673
BciT130I	CCWGG	1 cut(s)	202
BclI	TGATCA	2 cut(s)	297, 564
BcnI	CCSGG	1 cut(s)	138
BcoDI	GTCTC	1 cut(s)	135
BfoI	RGCGCY	1 cut(s)	213
BisI	GCNGC	4 cut(s)	100, 247, 450, 724
BlsI	GCNGC	4 cut(s)	101, 248, 451, 725
Bme1390I	CCNGG	2 cut(s)	138, 202
BmeRI	GACNNNNNGTC	1 cut(s)	627
BmgBI	CACGTC	1 cut(s)	377
BmgT120I	GGNCC	2 cut(s)	94, 423
BmiI	GGNNCC	4 cut(s)	32, 211, 396, 691
BmrFI	CCNGG	2 cut(s)	138, 202
BmsI	GCATC	3 cut(s)	57, 63, 156
BpiI	GAAGAC	1 cut(s)	118
BpuEI	CTTGAG	1 cut(s)	690
BpuMI	CCSGG	1 cut(s)	138
BsaHI	GRCGYC	2 cut(s)	177, 210
BsaI	GGTCTC	1 cut(s)	135
BsaJI	CCNNGG	3 cut(s)	75, 136, 323
Bsc4I	CCNNNNNNNGG	4 cut(s)	253, 339, 404, 405
Bse118I	RCCGGY	1 cut(s)	27
BseBI	CCWGG	1 cut(s)	202
BseDI	CCNNGG	3 cut(s)	75, 136, 323
BseGI	GGATG	5 cut(s)	54, 147, 465, 604, 684
BseLI	CCNNNNNNNGG	4 cut(s)	253, 339, 404, 405
BseMII	CTCAG	1 cut(s)	603
BseRI	GAGGAG	3 cut(s)	101, 365, 503
BseXI	GCAGC	1 cut(s)	111
BseYI	CCCAGC	2 cut(s)	215, 503
Bsh1236I	CGCG	1 cut(s)	249
BshFI	GGCC	2 cut(s)	95, 424
BshNI	GGYRCC	3 cut(s)	30, 209, 394
BsiHKAI	GWGCWC	2 cut(s)	24, 332
BsiSI	CCGG	2 cut(s)	28, 138
BslFI	GGGAC	2 cut(s)	89, 118
BslI	CCNNNNNNNGG	4 cut(s)	253, 339, 404, 405
BsmAI	GTCTC	1 cut(s)	135
BsmFI	GGGAC	2 cut(s)	89, 118
BsnI	GGCC	2 cut(s)	95, 424
Bso31I	GGTCTC	1 cut(s)	135
Bsp1286I	GDGCHC	2 cut(s)	24, 332
Bsp143I	GATC	4 cut(s)	83, 297, 385, 564
BspANI	GGCC	2 cut(s)	95, 424
BspCNI	CTCAG	1 cut(s)	602
BspFNI	CGCG	1 cut(s)	249
BspLI	GGNNCC	4 cut(s)	32, 211, 396, 691
BspPI	GGATC	2 cut(s)	78, 393
BspT107I	GGYRCC	3 cut(s)	30, 209, 394
BspTNI	GGTCTC	1 cut(s)	135
BsrBI	CCGCTC	1 cut(s)	383
BsrFI	RCCGGY	1 cut(s)	27
BssAI	RCCGGY	1 cut(s)	27
BssECI	CCNNGG	3 cut(s)	75, 136, 323
BssMI	GATC	4 cut(s)	83, 297, 385, 564
BssNI	GRCGYC	2 cut(s)	177, 210
BssT1I	CCWWGG	2 cut(s)	75, 323
Bst2UI	CCWGG	1 cut(s)	202
Bst4CI	ACNGT	1 cut(s)	625
BstACI	GRCGYC	2 cut(s)	177, 210
BstC8I	GCNNGC	3 cut(s)	97, 244, 264
BstDEI	CTNAG	1 cut(s)	589
BstF5I	GGATG	5 cut(s)	54, 147, 465, 604, 684
BstFNI	CGCG	1 cut(s)	249
BstH2I	RGCGCY	1 cut(s)	213
BstHHI	GCGC	2 cut(s)	212, 637
BstKTI	GATC	4 cut(s)	86, 300, 388, 567
BstMAI	GTCTC	1 cut(s)	135
BstMBI	GATC	4 cut(s)	83, 297, 385, 564
BstMWI	GCNNNNNNNGC	3 cut(s)	28, 45, 216
BstNI	CCWGG	1 cut(s)	202
BstSCI	CCNGG	2 cut(s)	136, 200
BstUI	CGCG	1 cut(s)	249
BstV1I	GCAGC	1 cut(s)	111
BstV2I	GAAGAC	1 cut(s)	118
BstX2I	RGATCY	1 cut(s)	83
BstXI	CCANNNNNNTGG	1 cut(s)	229
BstYI	RGATCY	1 cut(s)	83
BsuRI	GGCC	2 cut(s)	95, 424
BtrI	CACGTC	1 cut(s)	377
BtsCI	GGATG	5 cut(s)	54, 147, 465, 604, 684
Cac8I	GCNNGC	3 cut(s)	97, 244, 264
CfoI	GCGC	2 cut(s)	212, 637
Cfr10I	RCCGGY	1 cut(s)	27
Cfr13I	GGNCC	2 cut(s)	94, 423
CseI	GACGC	1 cut(s)	91
CsiI	ACCWGGT	1 cut(s)	200
Csp6I	GTAC	5 cut(s)	7, 395, 571, 586, 699
CviAII	CATG	5 cut(s)	130, 238, 295, 313, 358
CviQI	GTAC	5 cut(s)	7, 395, 571, 586, 699
DdeI	CTNAG	1 cut(s)	589
DinI	GGCGCC	1 cut(s)	211
DpnI	GATC	4 cut(s)	85, 299, 387, 566
DpnII	GATC	4 cut(s)	83, 297, 385, 564
DrdI	GACNNNNNNGTC	2 cut(s)	176, 275
DriI	GACNNNNNGTC	1 cut(s)	627
DseDI	GACNNNNNNGTC	2 cut(s)	176, 275
Eam1105I	GACNNNNNGTC	1 cut(s)	627
EciI	GGCGGA	3 cut(s)	106, 281, 377
Ecl136II	GAGCTC	1 cut(s)	330
Eco130I	CCWWGG	2 cut(s)	75, 323
Eco24I	GRGCYC	1 cut(s)	332
Eco31I	GGTCTC	1 cut(s)	135
Eco53kI	GAGCTC	1 cut(s)	330
EcoICRI	GAGCTC	1 cut(s)	330
EcoRII	CCWGG	1 cut(s)	200
EcoT14I	CCWWGG	2 cut(s)	75, 323
EcoT38I	GRGCYC	1 cut(s)	332
EgeI	GGCGCC	1 cut(s)	211
EheI	GGCGCC	1 cut(s)	211
ErhI	CCWWGG	2 cut(s)	75, 323
FaeI	CATG	5 cut(s)	133, 241, 298, 316, 361
FaiI	YATR	6 cut(s)	131, 239, 296, 314, 359, 739
FaqI	GGGAC	2 cut(s)	89, 118
FatI	CATG	5 cut(s)	129, 237, 294, 312, 357
FauI	CCCGC	1 cut(s)	104
FbaI	TGATCA	2 cut(s)	297, 564
Fnu4HI	GCNGC	4 cut(s)	100, 247, 450, 724
FokI	GGATG	5 cut(s)	41, 134, 472, 611, 691
FriOI	GRGCYC	1 cut(s)	332
Fsp4HI	GCNGC	4 cut(s)	100, 247, 450, 724
GlaI	GCGC	2 cut(s)	211, 636
GluI	GCNGC	4 cut(s)	100, 247, 450, 724
GsaI	CCCAGC	2 cut(s)	219, 507
HaeII	RGCGCY	1 cut(s)	213
HaeIII	GGCC	2 cut(s)	95, 424
HapII	CCGG	2 cut(s)	28, 138
HgaI	GACGC	1 cut(s)	91
HhaI	GCGC	2 cut(s)	212, 637
Hin1I	GRCGYC	2 cut(s)	177, 210
Hin1II	CATG	5 cut(s)	133, 241, 298, 316, 361
Hin6I	GCGC	2 cut(s)	210, 635
HinP1I	GCGC	2 cut(s)	210, 635
HincII	GTYRAC	1 cut(s)	621
HindII	GTYRAC	1 cut(s)	621
HinfI	GANTC	3 cut(s)	467, 628, 646
HpaII	CCGG	2 cut(s)	28, 138
HphI	GGTGA	4 cut(s)	29, 190, 268, 508
Hpy166II	GTNNAC	2 cut(s)	9, 621
Hpy188I	TCNGA	6 cut(s)	83, 334, 374, 472, 555, 592
Hpy188III	TCNNGA	3 cut(s)	280, 577, 707
Hpy8I	GTNNAC	2 cut(s)	9, 621
Hpy99I	CGWCG	3 cut(s)	179, 378, 431
HpyAV	CCTTC	2 cut(s)	433, 493
HpyCH4III	ACNGT	1 cut(s)	625
HpyCH4IV	ACGT	4 cut(s)	162, 177, 189, 376
HpyCH4V	TGCA	1 cut(s)	4
HpyF10VI	GCNNNNNNNGC	3 cut(s)	28, 45, 216
HpyF3I	CTNAG	1 cut(s)	589
HpySE526I	ACGT	4 cut(s)	162, 177, 189, 376
Hsp92I	GRCGYC	2 cut(s)	177, 210
Hsp92II	CATG	5 cut(s)	133, 241, 298, 316, 361
HspAI	GCGC	2 cut(s)	210, 635
KasI	GGCGCC	1 cut(s)	209
KpnI	GGTACC	1 cut(s)	398
Ksp22I	TGATCA	2 cut(s)	297, 564
Kzo9I	GATC	4 cut(s)	83, 297, 385, 564
LmnI	GCTCC	5 cut(s)	224, 327, 335, 380, 695
Lsp1109I	GCAGC	1 cut(s)	111
LweI	GCATC	3 cut(s)	57, 63, 156
MabI	ACCWGGT	1 cut(s)	200
MaeII	ACGT	4 cut(s)	162, 177, 189, 376
MaeIII	GTNAC	1 cut(s)	196
MalI	GATC	4 cut(s)	85, 299, 387, 566
MbiI	CCGCTC	1 cut(s)	383
MboI	GATC	4 cut(s)	83, 297, 385, 564
MboII	GAAGA	2 cut(s)	118, 355
MflI	RGATCY	1 cut(s)	83
MhlI	GDGCHC	2 cut(s)	24, 332
MluCI	AATT	1 cut(s)	640
Mly113I	GGCGCC	1 cut(s)	210
MlyI	GAGTC	2 cut(s)	476, 637
MmeI	TCCRAC	4 cut(s)	90, 397, 450, 504
MslI	CAYNNNNRTG	1 cut(s)	156
MspA1I	CMGCKG	1 cut(s)	303
MspI	CCGG	2 cut(s)	28, 138
MspR9I	CCNGG	2 cut(s)	138, 202
MvaI	CCWGG	1 cut(s)	202
MvnI	CGCG	1 cut(s)	249
MwoI	GCNNNNNNNGC	3 cut(s)	28, 45, 216
NarI	GGCGCC	1 cut(s)	210
NciI	CCSGG	1 cut(s)	138
NdeII	GATC	4 cut(s)	83, 297, 385, 564
NlaIII	CATG	5 cut(s)	133, 241, 298, 316, 361
NlaIV	GGNNCC	4 cut(s)	32, 211, 396, 691
NmuCI	GTSAC	1 cut(s)	196
PcsI	WCGNNNNNNNCGW	2 cut(s)	174, 423
PfeI	GAWTC	1 cut(s)	646
PkrI	GCNGC	4 cut(s)	101, 248, 451, 725
PleI	GAGTC	2 cut(s)	475, 636
PluTI	GGCGCC	1 cut(s)	213
PpsI	GAGTC	2 cut(s)	475, 636
Psp124BI	GAGCTC	1 cut(s)	332
Psp6I	CCWGG	1 cut(s)	200
PspFI	CCCAGC	2 cut(s)	215, 503
PspGI	CCWGG	1 cut(s)	200
PspN4I	GGNNCC	4 cut(s)	32, 211, 396, 691
PspPI	GGNCC	2 cut(s)	94, 423
PsuI	RGATCY	1 cut(s)	83
PvuII	CAGCTG	1 cut(s)	303
RsaI	GTAC	5 cut(s)	8, 396, 572, 587, 700
RsaNI	GTAC	5 cut(s)	7, 395, 571, 586, 699
RseI	CAYNNNNRTG	1 cut(s)	156
SacI	GAGCTC	1 cut(s)	332
SatI	GCNGC	4 cut(s)	100, 247, 450, 724
Sau3AI	GATC	4 cut(s)	83, 297, 385, 564
Sau96I	GGNCC	2 cut(s)	94, 423
SchI	GAGTC	2 cut(s)	476, 637
ScrFI	CCNGG	2 cut(s)	138, 202
SduI	GDGCHC	2 cut(s)	24, 332
SexAI	ACCWGGT	1 cut(s)	200
SfaNI	GCATC	3 cut(s)	57, 63, 156
SfoI	GGCGCC	1 cut(s)	211
SmiMI	CAYNNNNRTG	1 cut(s)	156
SmlI	CTYRAG	1 cut(s)	705
SmoI	CTYRAG	1 cut(s)	705
Sse9I	AATT	1 cut(s)	640
SspDI	GGCGCC	1 cut(s)	209
SstI	GAGCTC	1 cut(s)	332
StyD4I	CCNGG	2 cut(s)	136, 200
StyI	CCWWGG	2 cut(s)	75, 323
TaaI	ACNGT	1 cut(s)	625
TaiI	ACGT	4 cut(s)	165, 180, 192, 379
TaqI	TCGA	2 cut(s)	43, 168
TasI	AATT	1 cut(s)	640
TatI	WGTACW	4 cut(s)	6, 570, 585, 698
TauI	GCSGC	3 cut(s)	249, 452, 726
TfiI	GAWTC	1 cut(s)	646
TseFI	GTSAC	1 cut(s)	196
TseI	GCWGC	1 cut(s)	99
Tsp45I	GTSAC	1 cut(s)	196
TspDTI	ATGAA	2 cut(s)	118, 346
TspGWI	ACGGA	1 cut(s)	26
XapI	RAATTY	1 cut(s)	640
ZraI	GACGTC	1 cut(s)	178

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.