Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr10

Orthogroup ID

OG0000729

Physical Location & Seq

Genomic Coordinates Forward (+)

21457397 .. 21457921

Gene Structure 525 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom10g18190.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 525 bp

ATGACGTCACACTACATCGACTTCCCCACCGACTCCGTCCATCTAGCCTCCAACCTCAGCCGCCGCGTCCCTCTATCGATTCCCTGCGTCTCGTCCCCGATGGACACTGTCACCGAGTCCCACATGGCGATTTCGATGGCCGCACTCGGCGGCATAGGTATCATCCACTCCAACTTGACGTCGTCCGAGCAATCCCGCATGGTCTGGTCCGTCAAGTCCCGCCGGGTCCCGCTTCTTTCGAACCCCGTCTTCAAATCCCCAAGCGATCGAATCCAATCTGACGACGTTTTCGACGCTTCGAATCCCTATGTCCTGGTTACTGAGAATGGCAGCCCCAATTCGAAGCTTTTGGGGTACGTGGCGGGCAAGGATTGGGTGAAATTGGGGGACAAGGAGGTGAAGATTTACGATTACATGGTGAACTGTACGGACTTCACGGTGCCGTGGAGTTACGATTTGGGTGGCGATTGGGGAGTACATGGAGGAGAAAAAGCTAGATGTGGTTGCGACTTTGAGGGACGATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0003938 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006139 GO:0006163 GO:0006164 GO:0006183 GO:0006725 GO:0006753 GO:0006793 GO:0006796 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009116 GO:0009117 GO:0009119 GO:0009141 GO:0009142 GO:0009144 GO:0009145 GO:0009150 GO:0009152 GO:0009163 GO:0009165 GO:0009199 GO:0009201 GO:0009205 GO:0009206 GO:0009259 GO:0009260 GO:0009719 GO:0009725 GO:0009735 GO:0009987 GO:0010033 GO:0016491 GO:0016614 GO:0016616 GO:0018130 GO:0019438 GO:0019637 GO:0019693 GO:0034404 GO:0034641 GO:0034654 GO:0042221 GO:0042278 GO:0042451 GO:0042455 GO:0044237 GO:0044238 GO:0044249 GO:0044271 GO:0044281 GO:0044283 GO:0044424 GO:0044444 GO:0044464 GO:0046039 GO:0046128 GO:0046129 GO:0046390 GO:0046483 GO:0050896 GO:0055086 GO:0055114 GO:0071704 GO:0072521 GO:0072522 GO:0090407 GO:1901068 GO:1901070 GO:1901135 GO:1901137 GO:1901293 GO:1901360 GO:1901362 GO:1901564 GO:1901566 GO:1901576 GO:1901657 GO:1901659

KEGG Pathways

Metabolic & Signaling

ko00230 ko00983 ko01100 ko01110 map00230 map00983 map01100 map01110

Pfam Domains

Protein Families

IMPDH

Protein Analysis

175

Amino Acids

19.11

Weight (kDa)

5.67

Isoelectric Point (pI)

49.58

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
IMPDH	PF00478	3 - 82	2.1e-21	IMP dehydrogenase / GMP reductase domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000729)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G16350 AT1G79470
fragaria_vesca	FvH4_3g14430 FvH4_3g14430
malus_domestica	MD05G1237000.v1.1 MD05G1237500.v1.1 MD10G1213800.v1.1
prunus_persica	Prupe.4G129200_v2.0.a1 Prupe.4G129200_v2.0.a1
pyrus_communis	pycom05g21380 pycom10g18050 pycom10g18080 pycom10g18140 pycom10g18190
rosa_chinensis	RchiOBHm_Chr1g0350061 RchiOBHm_Chr2g0101951 RchiOBHm_Chr2g0155871 RchiOBHm_Chr3g0468611 RchiOBHm_Chr3g0493461 RchiOBHm_Chr4g0401281 RchiOBHm_Chr4g0402021 RchiOBHm_Chr5g0023561 RchiOBHm_Chr5g0023571 RchiOBHm_Chr5g0023741 RchiOBHm_Chr7g0231801 RchiOBHm_Chr7g0234111 RchiOBHm_Chr7g0238791 RchiOBHm_Chr7g0239601
rosa_laevigata	RLG00000032733
rosa_multiflora	Rmu_co8005014.1_g000001 Rmu_co8223904.1_g000001 Rmu_sc0000087.1_g000007 Rmu_sc0000110.1_g000028 Rmu_sc0000172.1_g000003 Rmu_sc0000689.1_g000019 Rmu_sc0000870.1_g000014 Rmu_sc0001372.1_g000011 Rmu_sc0001516.1_g000086 Rmu_sc0001653.1_g000008 Rmu_sc0002862.1_g000001 Rmu_sc0002862.1_g000002 Rmu_sc0008652.1_g000002 Rmu_sc0011789.1_g000002 Rmu_sc0013252.1_g000001 Rmu_sc0017256.1_g000001 Rmu_sc0017907.1_g000002 Rmu_sc0017907.1_g000003 Rmu_sc0018737.1_g000003 Rmu_sc0020536.1_g000001 Rmu_sc0025127.1_g000001 Rmu_sc0028608.1_g000001 Rmu_sc0029703.1_g000001 Rmu_ssc0000027.1_g000015
rosa_roxburghii	Rroxscaffold_1G00055450
rosa_rugosa	Rorug03G0326300 Rorug05G0079400 Rorug05G0352300
rosa_samantha	Rh5AG167200 Rh5AG169300 Rh5BG166700 Rh5CG181100 Rh5CG182300 Rh5DG168600 Rh6BG409700
rosa_wichuraiana	Rw0G001580 Rw0G004990 Rw1G017410 Rw2G027840 Rw4G002740 Rw5G015190 Rw5G015310 Rw7G033830

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	2 cut(s)	8, 182
AccB1I	GGYRCC	1 cut(s)	439
AccII	CGCG	1 cut(s)	66
AciI	CCGC	8 cut(s)	61, 64, 141, 150, 196, 220, 230, 362
AcoI	YGGCCR	1 cut(s)	138
AcyI	GRCGYC	2 cut(s)	5, 179
AfaI	GTAC	3 cut(s)	356, 427, 477
AgsI	TTSAA	1 cut(s)	253
AjnI	CCWGG	1 cut(s)	312
AluBI	AGCT	2 cut(s)	346, 494
AluI	AGCT	2 cut(s)	346, 494
Alw26I	GTCTC	1 cut(s)	94
AoxI	GGCC	1 cut(s)	138
ApeKI	GCWGC	1 cut(s)	330
ArsI	GACNNNNNNTTYG	2 cut(s)	272, 304
AspS9I	GGNCC	2 cut(s)	207, 226
AsuC2I	CCSGG	1 cut(s)	224
AsuHPI	GGTGA	4 cut(s)	103, 388, 409, 430
AsuII	TTCGAA	3 cut(s)	239, 299, 341
AvaII	GGWCC	2 cut(s)	207, 226
BanI	GGYRCC	1 cut(s)	439
BbsI	GAAGAC	1 cut(s)	241
BbvCI	CCTCAGC	1 cut(s)	56
BbvI	GCAGC	1 cut(s)	342
BccI	CCATC	3 cut(s)	48, 94, 130
BceAI	ACGGC	1 cut(s)	427
BciT130I	CCWGG	1 cut(s)	314
BcnI	CCSGG	1 cut(s)	224
BcoDI	GTCTC	1 cut(s)	94
BfaI	CTAG	2 cut(s)	44, 495
BisI	GCNGC	5 cut(s)	61, 64, 141, 151, 331
BlsI	GCNGC	5 cut(s)	62, 65, 142, 152, 332
Bme1390I	CCNGG	2 cut(s)	224, 314
Bme18I	GGWCC	2 cut(s)	207, 226
BmgT120I	GGNCC	2 cut(s)	207, 226
BmiI	GGNNCC	3 cut(s)	227, 228, 441
BmrFI	CCNGG	2 cut(s)	224, 314
BpiI	GAAGAC	1 cut(s)	241
Bpu10I	CCTNAGC	1 cut(s)	56
Bpu14I	TTCGAA	3 cut(s)	239, 299, 341
BpuMI	CCSGG	1 cut(s)	224
Bsa29I	ATCGAT	1 cut(s)	77
BsaAI	YACGTR	1 cut(s)	358
BsaHI	GRCGYC	2 cut(s)	5, 179
BsaJI	CCNNGG	1 cut(s)	443
BseBI	CCWGG	1 cut(s)	314
BseCI	ATCGAT	1 cut(s)	77
BseDI	CCNNGG	1 cut(s)	443
BseGI	GGATG	1 cut(s)	162
BseMII	CTCAG	2 cut(s)	70, 312
BseRI	GAGGAG	1 cut(s)	498
BseXI	GCAGC	1 cut(s)	342
Bsh1236I	CGCG	1 cut(s)	66
Bsh1285I	CGRYCG	1 cut(s)	268
BshFI	GGCC	1 cut(s)	140
BshNI	GGYRCC	1 cut(s)	439
BshVI	ATCGAT	1 cut(s)	77
BsiEI	CGRYCG	1 cut(s)	268
BsiSI	CCGG	1 cut(s)	223
BslFI	GGGAC	6 cut(s)	53, 79, 103, 202, 212, 401
BsmAI	GTCTC	1 cut(s)	94
BsmBI	CGTCTC	1 cut(s)	94
BsmFI	GGGAC	6 cut(s)	53, 79, 103, 202, 212, 401
BsnI	GGCC	1 cut(s)	140
Bsp119I	TTCGAA	3 cut(s)	239, 299, 341
Bsp143I	GATC	1 cut(s)	265
BspACI	CCGC	8 cut(s)	61, 64, 141, 150, 196, 220, 230, 362
BspANI	GGCC	1 cut(s)	140
BspCNI	CTCAG	2 cut(s)	69, 313
BspDI	ATCGAT	1 cut(s)	77
BspFNI	CGCG	1 cut(s)	66
BspLI	GGNNCC	3 cut(s)	227, 228, 441
BspT104I	TTCGAA	3 cut(s)	239, 299, 341
BspT107I	GGYRCC	1 cut(s)	439
BssECI	CCNNGG	1 cut(s)	443
BssMI	GATC	1 cut(s)	265
BssNI	GRCGYC	2 cut(s)	5, 179
Bst2UI	CCWGG	1 cut(s)	314
Bst4CI	ACNGT	3 cut(s)	109, 425, 439
BstACI	GRCGYC	2 cut(s)	5, 179
BstBAI	YACGTR	1 cut(s)	358
BstBI	TTCGAA	3 cut(s)	239, 299, 341
BstC8I	GCNNGC	1 cut(s)	364
BstDEI	CTNAG	2 cut(s)	56, 321
BstDSI	CCRYGG	1 cut(s)	443
BstF5I	GGATG	1 cut(s)	162
BstFNI	CGCG	1 cut(s)	66
BstKTI	GATC	1 cut(s)	268
BstMAI	GTCTC	1 cut(s)	94
BstMBI	GATC	1 cut(s)	265
BstMCI	CGRYCG	1 cut(s)	268
BstNI	CCWGG	1 cut(s)	314
BstSCI	CCNGG	2 cut(s)	222, 312
BstUI	CGCG	1 cut(s)	66
BstV1I	GCAGC	1 cut(s)	342
BstV2I	GAAGAC	1 cut(s)	241
Bsu15I	ATCGAT	1 cut(s)	77
BsuRI	GGCC	1 cut(s)	140
BsuTUI	ATCGAT	1 cut(s)	77
BtgI	CCRYGG	1 cut(s)	443
BtsCI	GGATG	1 cut(s)	162
BtsIMutI	CAGTG	1 cut(s)	105
Cac8I	GCNNGC	1 cut(s)	364
Cfr13I	GGNCC	2 cut(s)	207, 226
ClaI	ATCGAT	1 cut(s)	77
CseI	GACGC	3 cut(s)	55, 76, 302
Csp6I	GTAC	3 cut(s)	355, 426, 476
CviAII	CATG	4 cut(s)	124, 199, 415, 479
CviJI	RGCY	6 cut(s)	47, 60, 140, 333, 346, 494
CviKI_1	RGCY	6 cut(s)	47, 60, 140, 333, 346, 494
CviQI	GTAC	3 cut(s)	355, 426, 476
DdeI	CTNAG	2 cut(s)	56, 321
DpnI	GATC	1 cut(s)	267
DpnII	GATC	1 cut(s)	265
EaeI	YGGCCR	1 cut(s)	138
Eco47I	GGWCC	2 cut(s)	207, 226
EcoO109I	RGGNCCY	1 cut(s)	226
EcoRII	CCWGG	1 cut(s)	312
Esp3I	CGTCTC	1 cut(s)	94
FaeI	CATG	4 cut(s)	127, 202, 418, 482
FaiI	YATR	6 cut(s)	125, 155, 200, 309, 416, 480
FaqI	GGGAC	6 cut(s)	53, 79, 103, 202, 212, 401
FatI	CATG	4 cut(s)	123, 198, 414, 478
FauI	CCCGC	4 cut(s)	203, 227, 237, 355
Fnu4HI	GCNGC	5 cut(s)	61, 64, 141, 151, 331
FokI	GGATG	1 cut(s)	149
Fsp4HI	GCNGC	5 cut(s)	61, 64, 141, 151, 331
FspBI	CTAG	2 cut(s)	44, 495
GluI	GCNGC	5 cut(s)	61, 64, 141, 151, 331
HaeIII	GGCC	1 cut(s)	140
HapII	CCGG	1 cut(s)	223
HgaI	GACGC	3 cut(s)	55, 76, 302
Hin1I	GRCGYC	2 cut(s)	5, 179
Hin1II	CATG	4 cut(s)	127, 202, 418, 482
HindIII	AAGCTT	1 cut(s)	344
HinfI	GANTC	5 cut(s)	32, 79, 116, 270, 301
HpaII	CCGG	1 cut(s)	223
HphI	GGTGA	4 cut(s)	103, 388, 409, 430
Hpy166II	GTNNAC	1 cut(s)	421
Hpy188I	TCNGA	2 cut(s)	187, 280
Hpy8I	GTNNAC	1 cut(s)	421
Hpy99I	CGWCG	3 cut(s)	184, 287, 296
HpyCH4III	ACNGT	3 cut(s)	109, 425, 439
HpyCH4IV	ACGT	4 cut(s)	5, 179, 285, 357
HpyF3I	CTNAG	2 cut(s)	56, 321
HpySE526I	ACGT	4 cut(s)	5, 179, 285, 357
Hsp92I	GRCGYC	2 cut(s)	5, 179
Hsp92II	CATG	4 cut(s)	127, 202, 418, 482
KflI	GGGWCCC	1 cut(s)	226
Kzo9I	GATC	1 cut(s)	265
LpnPI	CCDG	5 cut(s)	97, 190, 236, 299, 326
Lsp1109I	GCAGC	1 cut(s)	342
MaeI	CTAG	2 cut(s)	44, 495
MaeII	ACGT	4 cut(s)	5, 179, 285, 357
MaeIII	GTNAC	4 cut(s)	6, 109, 316, 449
MalI	GATC	1 cut(s)	267
MboI	GATC	1 cut(s)	265
MboII	GAAGA	2 cut(s)	241, 412
MluCI	AATT	2 cut(s)	337, 380
MlyI	GAGTC	2 cut(s)	26, 125
MmeI	TCCRAC	2 cut(s)	75, 195
MnlI	CCTC	6 cut(s)	58, 65, 81, 388, 476, 508
MspI	CCGG	1 cut(s)	223
MspR9I	CCNGG	2 cut(s)	224, 314
MvaI	CCWGG	1 cut(s)	314
MvnI	CGCG	1 cut(s)	66
NciI	CCSGG	1 cut(s)	224
NdeII	GATC	1 cut(s)	265
NlaIII	CATG	4 cut(s)	127, 202, 418, 482
NlaIV	GGNNCC	3 cut(s)	227, 228, 441
NmeAIII	GCCGAG	1 cut(s)	126
NmuCI	GTSAC	2 cut(s)	6, 109
NspV	TTCGAA	3 cut(s)	239, 299, 341
PcsI	WCGNNNNNNNCGW	1 cut(s)	288
PfeI	GAWTC	3 cut(s)	79, 270, 301
PflFI	GACNNNGTC	3 cut(s)	35, 107, 181
PkrI	GCNGC	5 cut(s)	62, 65, 142, 152, 332
Ple19I	CGATCG	1 cut(s)	268
PleI	GAGTC	2 cut(s)	26, 124
PpsI	GAGTC	2 cut(s)	26, 124
Ppu21I	YACGTR	1 cut(s)	358
PpuMI	RGGWCCY	1 cut(s)	226
Psp5II	RGGWCCY	1 cut(s)	226
Psp6I	CCWGG	1 cut(s)	312
PspGI	CCWGG	1 cut(s)	312
PspN4I	GGNNCC	3 cut(s)	227, 228, 441
PspPI	GGNCC	2 cut(s)	207, 226
PspPPI	RGGWCCY	1 cut(s)	226
PsyI	GACNNNGTC	3 cut(s)	35, 107, 181
PvuI	CGATCG	1 cut(s)	268
RsaI	GTAC	3 cut(s)	356, 427, 477
RsaNI	GTAC	3 cut(s)	355, 426, 476
SatI	GCNGC	5 cut(s)	61, 64, 141, 151, 331
Sau3AI	GATC	1 cut(s)	265
Sau96I	GGNCC	2 cut(s)	207, 226
SchI	GAGTC	2 cut(s)	26, 125
ScrFI	CCNGG	2 cut(s)	224, 314
SetI	ASST	9 cut(s)	8, 57, 160, 182, 288, 348, 360, 399, 496
SfuI	TTCGAA	3 cut(s)	239, 299, 341
SinI	GGWCC	2 cut(s)	207, 226
Sse9I	AATT	2 cut(s)	337, 380
SsiI	CCGC	8 cut(s)	61, 64, 141, 150, 196, 220, 230, 362
SspMI	CTAG	2 cut(s)	44, 495
StyD4I	CCNGG	2 cut(s)	222, 312
TaaI	ACNGT	3 cut(s)	109, 425, 439
TaiI	ACGT	4 cut(s)	8, 182, 288, 360
TaqI	TCGA	8 cut(s)	18, 77, 134, 239, 268, 291, 299, 341
TasI	AATT	2 cut(s)	337, 380
TatI	WGTACW	1 cut(s)	475
TauI	GCSGC	4 cut(s)	63, 66, 143, 153
TfiI	GAWTC	3 cut(s)	79, 270, 301
TscAI	CASTG	1 cut(s)	112
TseFI	GTSAC	2 cut(s)	6, 109
TseI	GCWGC	1 cut(s)	330
Tsp45I	GTSAC	2 cut(s)	6, 109
TspGWI	ACGGA	3 cut(s)	25, 199, 443
TspRI	CASTG	1 cut(s)	112
Tth111I	GACNNNGTC	3 cut(s)	35, 107, 181
VpaK11BI	GGWCC	2 cut(s)	207, 226
XspI	CTAG	2 cut(s)	44, 495
ZraI	GACGTC	2 cut(s)	6, 180

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.