Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0020536.1

Orthogroup ID

OG0000729

Physical Location & Seq

Genomic Coordinates Reverse (-)

1 .. 780

Gene Structure 780 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0020536.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 567 bp

atggtcagatccgtcaaggcccgccgcgtccccctcctatccgcccccgtcttcatgtcccgcggagaccgcatccacaacgacgacttcggcgccctcagctccaagcttttgggctacatggcgagccgcaattgggtgaagctggcggacaaggaggtcaagatttacgattacatggttagctgtaaggacatggttttgccttggagctccgatttggggaagattgaggagtttatggcggataaaggccaggacgtggcggcgacggtgagggacgatgaggttgtcgacgttgtggggaaggagaacgtggagcggatcaaggggtacccgaagttggggtcgggtcggttgggcccgacgggggaactcatttatcagattgagatgattaagcacattaagaaaatgtactcagatttggatgtggttggtgggaatgtggtgactgtgagtcaggcgtataatttgattcaggctggtgttgatgggttgagggttgggatggggtctggctcaatttgtactactcaagaggtttgcgtcgttggcaggggacag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0003938 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006139 GO:0006163 GO:0006164 GO:0006183 GO:0006725 GO:0006753 GO:0006793 GO:0006796 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009116 GO:0009117 GO:0009119 GO:0009141 GO:0009142 GO:0009144 GO:0009145 GO:0009150 GO:0009152 GO:0009163 GO:0009165 GO:0009199 GO:0009201 GO:0009205 GO:0009206 GO:0009259 GO:0009260 GO:0009719 GO:0009725 GO:0009735 GO:0009987 GO:0010033 GO:0016491 GO:0016614 GO:0016616 GO:0018130 GO:0019438 GO:0019637 GO:0019693 GO:0034404 GO:0034641 GO:0034654 GO:0042221 GO:0042278 GO:0042451 GO:0042455 GO:0044237 GO:0044238 GO:0044249 GO:0044271 GO:0044281 GO:0044283 GO:0044424 GO:0044444 GO:0044464 GO:0046039 GO:0046128 GO:0046129 GO:0046390 GO:0046483 GO:0050896 GO:0055086 GO:0055114 GO:0071704 GO:0072521 GO:0072522 GO:0090407 GO:1901068 GO:1901070 GO:1901135 GO:1901137 GO:1901293 GO:1901360 GO:1901362 GO:1901564 GO:1901566 GO:1901576 GO:1901657 GO:1901659

KEGG Pathways

Metabolic & Signaling

ko00230 ko00983 ko01100 ko01110 map00230 map00983 map01100 map01110

Pfam Domains

Protein Families

IMPDH

Protein Analysis

189

Amino Acids

20.73

Weight (kDa)

7.66

Isoelectric Point (pI)

38.29

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000729)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G16350 AT1G79470
fragaria_vesca	FvH4_3g14430 FvH4_3g14430
malus_domestica	MD05G1237000.v1.1 MD05G1237500.v1.1 MD10G1213800.v1.1
prunus_persica	Prupe.4G129200_v2.0.a1 Prupe.4G129200_v2.0.a1
pyrus_communis	pycom05g21380 pycom10g18050 pycom10g18080 pycom10g18140 pycom10g18190
rosa_chinensis	RchiOBHm_Chr1g0350061 RchiOBHm_Chr2g0101951 RchiOBHm_Chr2g0155871 RchiOBHm_Chr3g0468611 RchiOBHm_Chr3g0493461 RchiOBHm_Chr4g0401281 RchiOBHm_Chr4g0402021 RchiOBHm_Chr5g0023561 RchiOBHm_Chr5g0023571 RchiOBHm_Chr5g0023741 RchiOBHm_Chr7g0231801 RchiOBHm_Chr7g0234111 RchiOBHm_Chr7g0238791 RchiOBHm_Chr7g0239601
rosa_laevigata	RLG00000032733
rosa_multiflora	Rmu_co8005014.1_g000001 Rmu_co8223904.1_g000001 Rmu_sc0000087.1_g000007 Rmu_sc0000110.1_g000028 Rmu_sc0000172.1_g000003 Rmu_sc0000689.1_g000019 Rmu_sc0000870.1_g000014 Rmu_sc0001372.1_g000011 Rmu_sc0001516.1_g000086 Rmu_sc0001653.1_g000008 Rmu_sc0002862.1_g000001 Rmu_sc0002862.1_g000002 Rmu_sc0008652.1_g000002 Rmu_sc0011789.1_g000002 Rmu_sc0013252.1_g000001 Rmu_sc0017256.1_g000001 Rmu_sc0017907.1_g000002 Rmu_sc0017907.1_g000003 Rmu_sc0018737.1_g000003 Rmu_sc0020536.1_g000001 Rmu_sc0025127.1_g000001 Rmu_sc0028608.1_g000001 Rmu_sc0029703.1_g000001 Rmu_ssc0000027.1_g000015
rosa_roxburghii	Rroxscaffold_1G00055450
rosa_rugosa	Rorug03G0326300 Rorug05G0079400 Rorug05G0352300
rosa_samantha	Rh5AG167200 Rh5AG169300 Rh5BG166700 Rh5CG181100 Rh5CG182300 Rh5DG168600 Rh6BG409700
rosa_wichuraiana	Rw0G001580 Rw0G004990 Rw1G017410 Rw2G027840 Rw4G002740 Rw5G015190 Rw5G015310 Rw7G033830

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	158
Acc65I	GGTACC	1 cut(s)	333
AccB1I	GGYRCC	2 cut(s)	92, 333
AccB7I	CCANNNNNTGG	1 cut(s)	262
AccBSI	CCGCTC	1 cut(s)	322
AccI	GTMKAC	1 cut(s)	294
AccII	CGCG	2 cut(s)	27, 63
AclWI	GGATC	2 cut(s)	3, 332
AcyI	GRCGYC	1 cut(s)	93
AfaI	GTAC	3 cut(s)	335, 419, 532
AfiI	CCNNNNNNNGG	6 cut(s)	136, 222, 262, 343, 344, 370
AhdI	GACNNNNNGTC	1 cut(s)	459
AjiI	CACGTC	1 cut(s)	262
AjnI	CCWGG	1 cut(s)	255
AluBI	AGCT	5 cut(s)	102, 109, 145, 186, 213
AluI	AGCT	5 cut(s)	102, 109, 145, 186, 213
Alw21I	GWGCWC	1 cut(s)	215
Alw26I	GTCTC	1 cut(s)	60
AlwI	GGATC	2 cut(s)	3, 332
AoxI	GGCC	3 cut(s)	18, 253, 361
ApaI	GGGCCC	1 cut(s)	365
ArsI	GACNNNNNNTTYG	2 cut(s)	332, 364
Asp718I	GGTACC	1 cut(s)	333
AspLEI	GCGC	1 cut(s)	95
AspS9I	GGNCC	3 cut(s)	19, 361, 362
AsuHPI	GGTGA	3 cut(s)	151, 286, 463
BaeGI	GKGCMC	1 cut(s)	365
BanI	GGYRCC	2 cut(s)	92, 333
BanII	GRGCYC	2 cut(s)	215, 365
BbsI	GAAGAC	1 cut(s)	43
Bbv12I	GWGCWC	1 cut(s)	215
BbvCI	CCTCAGC	1 cut(s)	98
BccI	CCATC	2 cut(s)	488, 505
BciT130I	CCWGG	1 cut(s)	257
BcoDI	GTCTC	1 cut(s)	60
BfoI	RGCGCY	1 cut(s)	96
BisI	GCNGC	3 cut(s)	25, 130, 267
BlsI	GCNGC	3 cut(s)	26, 131, 268
Bme1390I	CCNGG	1 cut(s)	257
BmeRI	GACNNNNNGTC	1 cut(s)	459
BmgBI	CACGTC	1 cut(s)	262
BmgT120I	GGNCC	3 cut(s)	19, 361, 362
BmiI	GGNNCC	3 cut(s)	94, 335, 363
BmrFI	CCNGG	1 cut(s)	257
BmsI	GCATC	1 cut(s)	81
BpiI	GAAGAC	1 cut(s)	43
Bpu10I	CCTNAGC	1 cut(s)	98
BpuEI	CTTGAG	1 cut(s)	522
BsaHI	GRCGYC	1 cut(s)	93
BsaI	GGTCTC	1 cut(s)	60
BsaJI	CCNNGG	2 cut(s)	61, 206
Bsc4I	CCNNNNNNNGG	6 cut(s)	136, 222, 262, 343, 344, 370
BseBI	CCWGG	1 cut(s)	257
BseDI	CCNNGG	2 cut(s)	61, 206
BseGI	GGATG	3 cut(s)	72, 436, 516
BseLI	CCNNNNNNNGG	6 cut(s)	136, 222, 262, 343, 344, 370
BseMII	CTCAG	2 cut(s)	112, 435
BseRI	GAGGAG	1 cut(s)	248
BseSI	GKGCMC	1 cut(s)	365
Bsh1236I	CGCG	2 cut(s)	27, 63
BshFI	GGCC	3 cut(s)	20, 255, 363
BshNI	GGYRCC	2 cut(s)	92, 333
BsiHKAI	GWGCWC	1 cut(s)	215
BslFI	GGGAC	3 cut(s)	14, 43, 293
BslI	CCNNNNNNNGG	6 cut(s)	136, 222, 262, 343, 344, 370
BsmAI	GTCTC	1 cut(s)	60
BsmFI	GGGAC	3 cut(s)	14, 43, 293
BsnI	GGCC	3 cut(s)	20, 255, 363
Bso31I	GGTCTC	1 cut(s)	60
Bsp120I	GGGCCC	1 cut(s)	361
Bsp1286I	GDGCHC	2 cut(s)	215, 365
Bsp143I	GATC	2 cut(s)	8, 324
BspANI	GGCC	3 cut(s)	20, 255, 363
BspCNI	CTCAG	2 cut(s)	111, 434
BspFNI	CGCG	2 cut(s)	27, 63
BspLI	GGNNCC	3 cut(s)	94, 335, 363
BspPI	GGATC	2 cut(s)	3, 332
BspT107I	GGYRCC	2 cut(s)	92, 333
BspTNI	GGTCTC	1 cut(s)	60
BsrBI	CCGCTC	1 cut(s)	322
BssECI	CCNNGG	2 cut(s)	61, 206
BssMI	GATC	2 cut(s)	8, 324
BssNI	GRCGYC	1 cut(s)	93
BssT1I	CCWWGG	1 cut(s)	206
Bst2UI	CCWGG	1 cut(s)	257
Bst4CI	ACNGT	2 cut(s)	274, 457
BstACI	GRCGYC	1 cut(s)	93
BstC8I	GCNNGC	3 cut(s)	22, 127, 147
BstDEI	CTNAG	2 cut(s)	98, 421
BstDSI	CCRYGG	1 cut(s)	61
BstF5I	GGATG	3 cut(s)	72, 436, 516
BstFNI	CGCG	2 cut(s)	27, 63
BstH2I	RGCGCY	1 cut(s)	96
BstHHI	GCGC	1 cut(s)	95
BstKTI	GATC	2 cut(s)	11, 327
BstMAI	GTCTC	1 cut(s)	60
BstMBI	GATC	2 cut(s)	8, 324
BstMWI	GCNNNNNNNGC	3 cut(s)	69, 99, 555
BstNI	CCWGG	1 cut(s)	257
BstSCI	CCNGG	1 cut(s)	255
BstSLI	GKGCMC	1 cut(s)	365
BstUI	CGCG	2 cut(s)	27, 63
BstV2I	GAAGAC	1 cut(s)	43
BstX2I	RGATCY	1 cut(s)	8
BstXI	CCANNNNNNTGG	1 cut(s)	112
BstYI	RGATCY	1 cut(s)	8
BsuRI	GGCC	3 cut(s)	20, 255, 363
BtgI	CCRYGG	1 cut(s)	61
BtrI	CACGTC	1 cut(s)	262
BtsCI	GGATG	3 cut(s)	72, 436, 516
Cac8I	GCNNGC	3 cut(s)	22, 127, 147
CfoI	GCGC	1 cut(s)	95
Cfr13I	GGNCC	3 cut(s)	19, 361, 362
Cfr42I	CCGCGG	1 cut(s)	64
CseI	GACGC	2 cut(s)	16, 538
Csp6I	GTAC	3 cut(s)	334, 418, 531
CviAII	CATG	4 cut(s)	55, 121, 178, 196
CviQI	GTAC	3 cut(s)	334, 418, 531
DdeI	CTNAG	2 cut(s)	98, 421
DinI	GGCGCC	1 cut(s)	94
DpnI	GATC	2 cut(s)	10, 326
DpnII	GATC	2 cut(s)	8, 324
DrdI	GACNNNNNNGTC	1 cut(s)	158
DriI	GACNNNNNGTC	1 cut(s)	459
DseDI	GACNNNNNNGTC	1 cut(s)	158
Eam1105I	GACNNNNNGTC	1 cut(s)	459
EciI	GGCGGA	3 cut(s)	31, 164, 260
Ecl136II	GAGCTC	1 cut(s)	213
Eco130I	CCWWGG	1 cut(s)	206
Eco24I	GRGCYC	2 cut(s)	215, 365
Eco31I	GGTCTC	1 cut(s)	60
Eco53kI	GAGCTC	1 cut(s)	213
EcoICRI	GAGCTC	1 cut(s)	213
EcoRII	CCWGG	1 cut(s)	255
EcoT14I	CCWWGG	1 cut(s)	206
EcoT38I	GRGCYC	2 cut(s)	215, 365
EgeI	GGCGCC	1 cut(s)	94
EheI	GGCGCC	1 cut(s)	94
ErhI	CCWWGG	1 cut(s)	206
FaeI	CATG	4 cut(s)	58, 124, 181, 199
FaiI	YATR	6 cut(s)	56, 122, 179, 197, 242, 471
FaqI	GGGAC	3 cut(s)	14, 43, 293
FatI	CATG	4 cut(s)	54, 120, 177, 195
FauI	CCCGC	2 cut(s)	29, 68
FblI	GTMKAC	1 cut(s)	294
Fnu4HI	GCNGC	3 cut(s)	25, 130, 267
FokI	GGATG	3 cut(s)	59, 443, 523
FriOI	GRGCYC	2 cut(s)	215, 365
Fsp4HI	GCNGC	3 cut(s)	25, 130, 267
GlaI	GCGC	1 cut(s)	94
GluI	GCNGC	3 cut(s)	25, 130, 267
HaeII	RGCGCY	1 cut(s)	96
HaeIII	GGCC	3 cut(s)	20, 255, 363
HgaI	GACGC	2 cut(s)	16, 538
HhaI	GCGC	1 cut(s)	95
Hin1I	GRCGYC	1 cut(s)	93
Hin1II	CATG	4 cut(s)	58, 124, 181, 199
Hin6I	GCGC	1 cut(s)	93
HinP1I	GCGC	1 cut(s)	93
HincII	GTYRAC	1 cut(s)	295
HindII	GTYRAC	1 cut(s)	295
HindIII	AAGCTT	1 cut(s)	107
HinfI	GANTC	2 cut(s)	460, 478
HphI	GGTGA	3 cut(s)	151, 286, 463
Hpy166II	GTNNAC	1 cut(s)	295
Hpy188I	TCNGA	4 cut(s)	8, 217, 387, 424
Hpy188III	TCNNGA	2 cut(s)	163, 539
Hpy8I	GTNNAC	1 cut(s)	295
Hpy99I	CGWCG	5 cut(s)	86, 274, 299, 370, 554
HpyAV	CCTTC	1 cut(s)	301
HpyCH4III	ACNGT	2 cut(s)	274, 457
HpyCH4IV	ACGT	3 cut(s)	261, 297, 315
HpyF10VI	GCNNNNNNNGC	3 cut(s)	69, 99, 555
HpyF3I	CTNAG	2 cut(s)	98, 421
HpySE526I	ACGT	3 cut(s)	261, 297, 315
Hsp92I	GRCGYC	1 cut(s)	93
Hsp92II	CATG	4 cut(s)	58, 124, 181, 199
HspAI	GCGC	1 cut(s)	93
KasI	GGCGCC	1 cut(s)	92
KpnI	GGTACC	1 cut(s)	337
KspI	CCGCGG	1 cut(s)	64
Kzo9I	GATC	2 cut(s)	8, 324
LmnI	GCTCC	4 cut(s)	107, 210, 218, 319
LpnPI	CCDG	8 cut(s)	131, 242, 269, 449, 467, 471, 504, 544
LweI	GCATC	1 cut(s)	81
MaeII	ACGT	3 cut(s)	261, 297, 315
MaeIII	GTNAC	1 cut(s)	451
MalI	GATC	2 cut(s)	10, 326
MbiI	CCGCTC	1 cut(s)	322
MboI	GATC	2 cut(s)	8, 324
MboII	GAAGA	2 cut(s)	43, 238
MfeI	CAATTG	1 cut(s)	133
MflI	RGATCY	1 cut(s)	8
MhlI	GDGCHC	2 cut(s)	215, 365
MluCI	AATT	3 cut(s)	133, 472, 525
Mly113I	GGCGCC	1 cut(s)	93
MlyI	GAGTC	1 cut(s)	469
MnlI	CCTC	8 cut(s)	44, 107, 151, 226, 270, 280, 495, 535
MseI	TTAA	2 cut(s)	399, 408
MspA1I	CMGCKG	1 cut(s)	63
MspR9I	CCNGG	1 cut(s)	257
MunI	CAATTG	1 cut(s)	133
MvaI	CCWGG	1 cut(s)	257
MvnI	CGCG	2 cut(s)	27, 63
MwoI	GCNNNNNNNGC	3 cut(s)	69, 99, 555
NarI	GGCGCC	1 cut(s)	93
NdeII	GATC	2 cut(s)	8, 324
NlaIII	CATG	4 cut(s)	58, 124, 181, 199
NlaIV	GGNNCC	3 cut(s)	94, 335, 363
NmuCI	GTSAC	1 cut(s)	451
PfeI	GAWTC	1 cut(s)	478
PflMI	CCANNNNNTGG	1 cut(s)	262
PkrI	GCNGC	3 cut(s)	26, 131, 268
PleI	GAGTC	1 cut(s)	468
PluTI	GGCGCC	1 cut(s)	96
PpsI	GAGTC	1 cut(s)	468
Psp124BI	GAGCTC	1 cut(s)	215
Psp6I	CCWGG	1 cut(s)	255
PspGI	CCWGG	1 cut(s)	255
PspN4I	GGNNCC	3 cut(s)	94, 335, 363
PspOMI	GGGCCC	1 cut(s)	361
PspPI	GGNCC	3 cut(s)	19, 361, 362
PsuI	RGATCY	1 cut(s)	8
RsaI	GTAC	3 cut(s)	335, 419, 532
RsaNI	GTAC	3 cut(s)	334, 418, 531
SacI	GAGCTC	1 cut(s)	215
SacII	CCGCGG	1 cut(s)	64
SalI	GTCGAC	1 cut(s)	293
SaqAI	TTAA	2 cut(s)	399, 408
SatI	GCNGC	3 cut(s)	25, 130, 267
Sau3AI	GATC	2 cut(s)	8, 324
Sau96I	GGNCC	3 cut(s)	19, 361, 362
SchI	GAGTC	1 cut(s)	469
ScrFI	CCNGG	1 cut(s)	257
SduI	GDGCHC	2 cut(s)	215, 365
SfaNI	GCATC	1 cut(s)	81
SfoI	GGCGCC	1 cut(s)	94
Sfr303I	CCGCGG	1 cut(s)	64
SgrBI	CCGCGG	1 cut(s)	64
SmlI	CTYRAG	1 cut(s)	537
SmoI	CTYRAG	1 cut(s)	537
Sse9I	AATT	3 cut(s)	133, 472, 525
SspDI	GGCGCC	1 cut(s)	92
SstI	GAGCTC	1 cut(s)	215
StyD4I	CCNGG	1 cut(s)	255
StyI	CCWWGG	1 cut(s)	206
TaaI	ACNGT	2 cut(s)	274, 457
TaiI	ACGT	3 cut(s)	264, 300, 318
TaqI	TCGA	1 cut(s)	294
TasI	AATT	3 cut(s)	133, 472, 525
TatI	WGTACW	2 cut(s)	417, 530
TauI	GCSGC	3 cut(s)	27, 132, 269
TfiI	GAWTC	1 cut(s)	478
Tru1I	TTAA	2 cut(s)	399, 408
Tru9I	TTAA	2 cut(s)	399, 408
TseFI	GTSAC	1 cut(s)	451
Tsp45I	GTSAC	1 cut(s)	451
TspDTI	ATGAA	1 cut(s)	43
Van91I	CCANNNNNTGG	1 cut(s)	262
XmiI	GTMKAC	1 cut(s)	294

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.