pycom10g18080

Catalyzes the conversion of inosine 5'-phosphate (IMP) to xanthosine 5'-phosphate (XMP), the first committed and rate- limiting step in the de novo synthesis of guanine nucleotides, and therefore plays an important role in the regulation of cell growth

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr10
Physical Location & Seq
Forward (+)
21216357 .. 21218455
2099 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom10g18080.3

Sequence Viewer

Length: 717 bp
ATGGAGGAGAAAAAACGAGATTTGGTGGCGACTGTGAGGGAAAATGAGGTGGTGGATGTGGTGGCGAATGAGCAGGTGGAGAGGATTAAAGGGTACCCCAAATTGGGGGTTGGGACGGTGGGTCCCGACGGGACGTGGCGGGTTGGGGCGGCGATCGGGACGAGGGAGTCGGATAAGGAGAGGTTGGAGGAGTTGGTGAAGGCAGGGGTGGATGTAGTGGTGTTGGATAGCTCTCAGGGGAACTCCATTTATCAGATTGAGATGATAAAGTATGTGAAGAAAATGTACTCGAATTTGGATGTAGTTGGCGGGAATGTGGTGACGGTGAGTCAGGCGCAGAATTTGATTCAGGCTGGTGTTGACGGGTTGAGGGTTGGAATGGGGTCTGGCTCAATTTGTACCACTCAAGAGGTCTGCGCTGTCGGTCGCGGACAGGCAACTGCTGTTTACAAGGTTGCGTCTATTGCTTCACAAAGTGGGGTGCCCGTGATTGCTGATGGTGGAATTTCCAATTCTGGACACATTGTCAAGGCTTTGGTCCTTGGGGCTTCTACTGTCATGATGGGAAGCTTCTTAGCTGGAAGCACGGAGGCTCCCGGGGTTTTTGTGTATCAGAATGGTCGCCGAGTCAAAAAATATCGAGGCATGGGGTCTCTTGAAGCAATGACAAAAGGGAGTGATCGATCAAAAACAGAGGTACTTGGGCGATACAGCTAA

Protein Analysis

239

Amino Acids

25.11

Weight (kDa)

8.77

Isoelectric Point (pI)

24.03

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000729)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G16350 AT1G79470
fragaria_vesca FvH4_3g14430 FvH4_3g14430
malus_domestica MD05G1237000.v1.1 MD05G1237500.v1.1 MD10G1213800.v1.1
prunus_persica Prupe.4G129200_v2.0.a1 Prupe.4G129200_v2.0.a1
pyrus_communis pycom05g21380 pycom10g18050 pycom10g18080 pycom10g18140 pycom10g18190
rosa_chinensis RchiOBHm_Chr1g0350061 RchiOBHm_Chr2g0101951 RchiOBHm_Chr2g0155871 RchiOBHm_Chr3g0468611 RchiOBHm_Chr3g0493461 RchiOBHm_Chr4g0401281 RchiOBHm_Chr4g0402021 RchiOBHm_Chr5g0023561 RchiOBHm_Chr5g0023571 RchiOBHm_Chr5g0023741 RchiOBHm_Chr7g0231801 RchiOBHm_Chr7g0234111 RchiOBHm_Chr7g0238791 RchiOBHm_Chr7g0239601
rosa_laevigata RLG00000032733
rosa_multiflora Rmu_co8005014.1_g000001 Rmu_co8223904.1_g000001 Rmu_sc0000087.1_g000007 Rmu_sc0000110.1_g000028 Rmu_sc0000172.1_g000003 Rmu_sc0000689.1_g000019 Rmu_sc0000870.1_g000014 Rmu_sc0001372.1_g000011 Rmu_sc0001516.1_g000086 Rmu_sc0001653.1_g000008 Rmu_sc0002862.1_g000001 Rmu_sc0002862.1_g000002 Rmu_sc0008652.1_g000002 Rmu_sc0011789.1_g000002 Rmu_sc0013252.1_g000001 Rmu_sc0017256.1_g000001 Rmu_sc0017907.1_g000002 Rmu_sc0017907.1_g000003 Rmu_sc0018737.1_g000003 Rmu_sc0020536.1_g000001 Rmu_sc0025127.1_g000001 Rmu_sc0028608.1_g000001 Rmu_sc0029703.1_g000001 Rmu_ssc0000027.1_g000015
rosa_roxburghii Rroxscaffold_1G00055450
rosa_rugosa Rorug03G0326300 Rorug05G0079400 Rorug05G0352300
rosa_samantha Rh5AG167200 Rh5AG169300 Rh5BG166700 Rh5CG181100 Rh5CG182300 Rh5DG168600 Rh6BG409700
rosa_wichuraiana Rw0G001580 Rw0G004990 Rw1G017410 Rw2G027840 Rw4G002740 Rw5G015190 Rw5G015310 Rw7G033830

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 64
AasI GACNNNNNNGTC 1 cut(s) 166
Acc36I ACCTGC 1 cut(s) 64
Acc65I GGTACC 1 cut(s) 93
AccB1I GGYRCC 2 cut(s) 93, 481
AccII CGCG 1 cut(s) 429
AciI CCGC 4 cut(s) 139, 149, 309, 429
AcsI RAATTY 3 cut(s) 292, 340, 504
AdeI CACNNNGTG 1 cut(s) 476
AfaI GTAC 4 cut(s) 95, 287, 400, 699
AfiI CCNNNNNNNGG 3 cut(s) 103, 104, 105
AgsI TTSAA 1 cut(s) 659
AhdI GACNNNNNGTC 3 cut(s) 120, 327, 524
AjiI CACGTC 1 cut(s) 135
AluBI AGCT 4 cut(s) 231, 570, 578, 714
AluI AGCT 4 cut(s) 231, 570, 578, 714
Alw26I GTCTC 1 cut(s) 657
Ama87I CYCGRG 1 cut(s) 596
ApoI RAATTY 3 cut(s) 292, 340, 504
Asp718I GGTACC 1 cut(s) 93
AspLEI GCGC 2 cut(s) 337, 419
AspS9I GGNCC 2 cut(s) 122, 538
AsuC2I CCSGG 2 cut(s) 597, 598
AsuHPI GGTGA 3 cut(s) 208, 331, 337
AvaI CYCGRG 1 cut(s) 596
AvaII GGWCC 2 cut(s) 122, 538
BaeGI GKGCMC 1 cut(s) 486
BanI GGYRCC 2 cut(s) 93, 481
BarI GAAGNNNNNNTAC 2 cut(s) 269, 301
BccI CCATC 2 cut(s) 491, 556
BcnI CCSGG 2 cut(s) 597, 598
BcoDI GTCTC 1 cut(s) 657
BfuAI ACCTGC 1 cut(s) 64
BisI GCNGC 1 cut(s) 150
BlsI GCNGC 1 cut(s) 151
Bme1390I CCNGG 2 cut(s) 597, 598
Bme18I GGWCC 2 cut(s) 122, 538
BmeRI GACNNNNNGTC 3 cut(s) 120, 327, 524
BmeT110I CYCGRG 1 cut(s) 596
BmgBI CACGTC 1 cut(s) 135
BmgT120I GGNCC 2 cut(s) 122, 538
BmiI GGNNCC 5 cut(s) 95, 123, 124, 483, 594
BmrFI CCNGG 2 cut(s) 597, 598
BpuEI CTTGAG 1 cut(s) 390
BpuMI CCSGG 2 cut(s) 597, 598
Bsa29I ATCGAT 1 cut(s) 682
BsaI GGTCTC 1 cut(s) 657
BsaJI CCNNGG 3 cut(s) 541, 596, 597
BsaXI ACNNNNNCTCC 2 cut(s) 577, 607
Bsc4I CCNNNNNNNGG 3 cut(s) 103, 104, 105
Bse3DI GCAATG 1 cut(s) 669
BseCI ATCGAT 1 cut(s) 682
BseDI CCNNGG 3 cut(s) 541, 596, 597
BseGI GGATG 3 cut(s) 61, 217, 304
BseLI CCNNNNNNNGG 3 cut(s) 103, 104, 105
BseMI GCAATG 1 cut(s) 669
BseMII CTCAG 1 cut(s) 248
BseRI GAGGAG 2 cut(s) 20, 203
BseSI GKGCMC 1 cut(s) 486
Bsh1236I CGCG 1 cut(s) 429
Bsh1285I CGRYCG 2 cut(s) 156, 427
BshNI GGYRCC 2 cut(s) 93, 481
BshVI ATCGAT 1 cut(s) 682
BsiEI CGRYCG 2 cut(s) 156, 427
BsiHKCI CYCGRG 1 cut(s) 596
BsiSI CCGG 1 cut(s) 597
BslFI GGGAC 4 cut(s) 108, 127, 145, 172
BslI CCNNNNNNNGG 3 cut(s) 103, 104, 105
BsmAI GTCTC 1 cut(s) 657
BsmFI GGGAC 4 cut(s) 108, 127, 145, 172
Bso31I GGTCTC 1 cut(s) 657
BsoBI CYCGRG 1 cut(s) 596
Bsp1286I GDGCHC 1 cut(s) 486
Bsp143I GATC 3 cut(s) 153, 679, 683
BspACI CCGC 4 cut(s) 139, 149, 309, 429
BspCNI CTCAG 1 cut(s) 247
BspDI ATCGAT 1 cut(s) 682
BspFNI CGCG 1 cut(s) 429
BspHI TCATGA 1 cut(s) 558
BspLI GGNNCC 5 cut(s) 95, 123, 124, 483, 594
BspMI ACCTGC 1 cut(s) 64
BspT107I GGYRCC 2 cut(s) 93, 481
BspTNI GGTCTC 1 cut(s) 657
BsrDI GCAATG 1 cut(s) 669
BssECI CCNNGG 3 cut(s) 541, 596, 597
BssMI GATC 3 cut(s) 153, 679, 683
BssT1I CCWWGG 1 cut(s) 541
Bst4CI ACNGT 4 cut(s) 34, 118, 325, 556
BstDEI CTNAG 2 cut(s) 234, 574
BstF5I GGATG 3 cut(s) 61, 217, 304
BstFNI CGCG 1 cut(s) 429
BstHHI GCGC 2 cut(s) 337, 419
BstKTI GATC 3 cut(s) 156, 682, 686
BstMAI GTCTC 1 cut(s) 657
BstMBI GATC 3 cut(s) 153, 679, 683
BstMCI CGRYCG 2 cut(s) 156, 427
BstMWI GCNNNNNNNGC 1 cut(s) 464
BstSCI CCNGG 2 cut(s) 595, 596
BstSLI GKGCMC 1 cut(s) 486
BstUI CGCG 1 cut(s) 429
Bsu15I ATCGAT 1 cut(s) 682
BsuTUI ATCGAT 1 cut(s) 682
BtrI CACGTC 1 cut(s) 135
BtsCI GGATG 3 cut(s) 61, 217, 304
BveI ACCTGC 1 cut(s) 64
CciI TCATGA 1 cut(s) 558
CfoI GCGC 2 cut(s) 337, 419
Cfr13I GGNCC 2 cut(s) 122, 538
Cfr9I CCCGGG 1 cut(s) 596
ClaI ATCGAT 1 cut(s) 682
CseI GACGC 1 cut(s) 447
Csp6I GTAC 4 cut(s) 94, 286, 399, 698
CviAII CATG 2 cut(s) 559, 646
CviJI RGCY 9 cut(s) 231, 353, 390, 533, 548, 570, 578, 593, 714
CviKI_1 RGCY 9 cut(s) 231, 353, 390, 533, 548, 570, 578, 593, 714
CviQI GTAC 4 cut(s) 94, 286, 399, 698
DdeI CTNAG 2 cut(s) 234, 574
DpnI GATC 3 cut(s) 155, 681, 685
DpnII GATC 3 cut(s) 153, 679, 683
DraIII CACNNNGTG 1 cut(s) 476
DrdI GACNNNNNNGTC 1 cut(s) 166
DriI GACNNNNNGTC 3 cut(s) 120, 327, 524
DseDI GACNNNNNNGTC 1 cut(s) 166
Eam1105I GACNNNNNGTC 3 cut(s) 120, 327, 524
Eco130I CCWWGG 1 cut(s) 541
Eco31I GGTCTC 1 cut(s) 657
Eco47I GGWCC 2 cut(s) 122, 538
Eco88I CYCGRG 1 cut(s) 596
EcoO109I RGGNCCY 1 cut(s) 122
EcoT14I CCWWGG 1 cut(s) 541
ErhI CCWWGG 1 cut(s) 541
FaeI CATG 2 cut(s) 562, 649
FaiI YATR 3 cut(s) 273, 560, 647
FaqI GGGAC 4 cut(s) 108, 127, 145, 172
FatI CATG 2 cut(s) 558, 645
FauI CCCGC 2 cut(s) 132, 302
Fnu4HI GCNGC 1 cut(s) 150
FokI GGATG 3 cut(s) 68, 224, 311
Fsp4HI GCNGC 1 cut(s) 150
GlaI GCGC 2 cut(s) 336, 418
GluI GCNGC 1 cut(s) 150
HapII CCGG 1 cut(s) 597
HgaI GACGC 1 cut(s) 447
HhaI GCGC 2 cut(s) 337, 419
Hin1II CATG 2 cut(s) 562, 649
Hin6I GCGC 2 cut(s) 335, 417
HinP1I GCGC 2 cut(s) 335, 417
HincII GTYRAC 1 cut(s) 361
HindII GTYRAC 1 cut(s) 361
HindIII AAGCTT 1 cut(s) 568
HinfI GANTC 4 cut(s) 167, 328, 346, 627
HpaII CCGG 1 cut(s) 597
HphI GGTGA 3 cut(s) 208, 331, 337
Hpy166II GTNNAC 2 cut(s) 361, 448
Hpy188I TCNGA 3 cut(s) 172, 255, 615
Hpy188III TCNNGA 6 cut(s) 125, 157, 407, 516, 559, 656
Hpy8I GTNNAC 2 cut(s) 361, 448
Hpy99I CGWCG 1 cut(s) 131
HpyAV CCTTC 1 cut(s) 193
HpyCH4III ACNGT 4 cut(s) 34, 118, 325, 556
HpyCH4IV ACGT 1 cut(s) 134
HpyF10VI GCNNNNNNNGC 1 cut(s) 464
HpyF3I CTNAG 2 cut(s) 234, 574
HpySE526I ACGT 1 cut(s) 134
Hsp92II CATG 2 cut(s) 562, 649
HspAI GCGC 2 cut(s) 335, 417
KflI GGGWCCC 1 cut(s) 122
KpnI GGTACC 1 cut(s) 97
Kzo9I GATC 3 cut(s) 153, 679, 683
LmnI GCTCC 1 cut(s) 598
MaeII ACGT 1 cut(s) 134
MaeIII GTNAC 1 cut(s) 319
MalI GATC 3 cut(s) 155, 681, 685
MboI GATC 3 cut(s) 153, 679, 683
MboII GAAGA 1 cut(s) 289
MhlI GDGCHC 1 cut(s) 486
MluCI AATT 6 cut(s) 101, 292, 340, 393, 504, 511
MlyI GAGTC 3 cut(s) 176, 337, 636
MmeI TCCRAC 4 cut(s) 150, 165, 204, 355
MseI TTAA 1 cut(s) 87
MspI CCGG 1 cut(s) 597
MspR9I CCNGG 2 cut(s) 597, 598
MvnI CGCG 1 cut(s) 429
MwoI GCNNNNNNNGC 1 cut(s) 464
NciI CCSGG 2 cut(s) 597, 598
NdeII GATC 3 cut(s) 153, 679, 683
NlaIII CATG 2 cut(s) 562, 649
NlaIV GGNNCC 5 cut(s) 95, 123, 124, 483, 594
NmeAIII GCCGAG 1 cut(s) 650
NmuCI GTSAC 1 cut(s) 319
PagI TCATGA 1 cut(s) 558
PaqCI CACCTGC 1 cut(s) 64
PfeI GAWTC 1 cut(s) 346
PkrI GCNGC 1 cut(s) 151
Ple19I CGATCG 1 cut(s) 156
PleI GAGTC 3 cut(s) 175, 336, 635
PpsI GAGTC 3 cut(s) 175, 336, 635
PpuMI RGGWCCY 1 cut(s) 122
Psp5II RGGWCCY 1 cut(s) 122
PspN4I GGNNCC 5 cut(s) 95, 123, 124, 483, 594
PspPI GGNCC 2 cut(s) 122, 538
PspPPI RGGWCCY 1 cut(s) 122
PvuI CGATCG 1 cut(s) 156
RsaI GTAC 4 cut(s) 95, 287, 400, 699
RsaNI GTAC 4 cut(s) 94, 286, 399, 698
SaqAI TTAA 1 cut(s) 87
SatI GCNGC 1 cut(s) 150
Sau3AI GATC 3 cut(s) 153, 679, 683
Sau96I GGNCC 2 cut(s) 122, 538
SchI GAGTC 3 cut(s) 176, 337, 636
ScrFI CCNGG 2 cut(s) 597, 598
SduI GDGCHC 1 cut(s) 486
SinI GGWCC 2 cut(s) 122, 538
SmaI CCCGGG 1 cut(s) 598
SmlI CTYRAG 1 cut(s) 405
SmoI CTYRAG 1 cut(s) 405
Sse9I AATT 6 cut(s) 101, 292, 340, 393, 504, 511
SsiI CCGC 4 cut(s) 139, 149, 309, 429
StyD4I CCNGG 2 cut(s) 595, 596
StyI CCWWGG 1 cut(s) 541
TaaI ACNGT 4 cut(s) 34, 118, 325, 556
TaiI ACGT 1 cut(s) 137
TaqI TCGA 3 cut(s) 290, 640, 682
TaqII GACCGA 1 cut(s) 413
TasI AATT 6 cut(s) 101, 292, 340, 393, 504, 511
TatI WGTACW 1 cut(s) 285
TauI GCSGC 1 cut(s) 152
TfiI GAWTC 1 cut(s) 346
Tru1I TTAA 1 cut(s) 87
Tru9I TTAA 1 cut(s) 87
TseFI GTSAC 1 cut(s) 319
Tsp45I GTSAC 1 cut(s) 319
TspGWI ACGGA 1 cut(s) 602
TspMI CCCGGG 1 cut(s) 596
VpaK11BI GGWCC 2 cut(s) 122, 538
XapI RAATTY 3 cut(s) 292, 340, 504
XmaI CCCGGG 1 cut(s) 596
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.