Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0000729

Physical Location & Seq

Genomic Coordinates Forward (+)

13365975 .. 13366855

Gene Structure 881 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ47646

Sequence Viewer

CDS Protein Promoter (2k)

Length: 753 bp

ATGGACACCGTCACCGAGTCCCACATGGCCGTCTCCATGGCCGCCCTCGGCGGCATCGGCATCCTCCACTCCAACGCCGCCTCCTCCGACCAGGCCGCCATGGTCAGATCCGTCAAAGGCCGCCGCGTCCCCCTCCTTTCTGCCCCCGTCTTCATGTCCCGAGGAGACCGCATCCACAACGACGACGTTTTCAACCACGGCGCCAATCCCTACGTCCTCGTCACCGAGTCCGGCGCCCCCAACTCCAAGCTTTTGGGCTACATGGCGAGCCGCGATTGGGTGAAGCTGGCGGACAAGGAGGTCAAGATTTACGATTACATGGTCAGCTGTAAGGACATGGTTTTGCCTTGGAGCTCCGATTTGGGGAAGATTGAGGAGTTCATGGCGGAGAAAGGCCGTGACGTGGCGGCGATGGTGAGGGACGACGAGGTTGTCGACGTTGTGGGGAAGGAGGACGTGGAGCGGAACAAGGGGTACCCAAAGTTGGGGGTCGGGTCGTGGAAGGTCGGGGCGGCGATAGGGACGAGGGAGTCGGATAAGGAGAGATTGGAGGAGTTGATTGAGATGATCAAGTACATCAAGAAAATGTACTCAGATTTGGATGTGGTTGGTGGGAATGTGGTGACTGTGAGTCAGGCACAGAATTTGATTCAGGCTGGTGTTGATGGGTTGAGGGTTGGGATGGGGTCTGGCTCCATTTGTACTACTCAAGAGGTTTGCGCCGTCGGCAGGGGACAGATTATTAGTGGATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0003938 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006139 GO:0006163 GO:0006164 GO:0006183 GO:0006725 GO:0006753 GO:0006793 GO:0006796 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009116 GO:0009117 GO:0009119 GO:0009141 GO:0009142 GO:0009144 GO:0009145 GO:0009150 GO:0009152 GO:0009163 GO:0009165 GO:0009199 GO:0009201 GO:0009205 GO:0009206 GO:0009259 GO:0009260 GO:0009719 GO:0009725 GO:0009735 GO:0009987 GO:0010033 GO:0016491 GO:0016614 GO:0016616 GO:0018130 GO:0019438 GO:0019637 GO:0019693 GO:0034404 GO:0034641 GO:0034654 GO:0042221 GO:0042278 GO:0042451 GO:0042455 GO:0044237 GO:0044238 GO:0044249 GO:0044271 GO:0044281 GO:0044283 GO:0044424 GO:0044444 GO:0044464 GO:0046039 GO:0046128 GO:0046129 GO:0046390 GO:0046483 GO:0050896 GO:0055086 GO:0055114 GO:0071704 GO:0072521 GO:0072522 GO:0090407 GO:1901068 GO:1901070 GO:1901135 GO:1901137 GO:1901293 GO:1901360 GO:1901362 GO:1901564 GO:1901566 GO:1901576 GO:1901657 GO:1901659

KEGG Pathways

Metabolic & Signaling

ko00230 ko00983 ko01100 ko01110 map00230 map00983 map01100 map01110

Pfam Domains

Protein Families

IMPDH

Protein Analysis

250

Amino Acids

26.99

Weight (kDa)

5.48

Isoelectric Point (pI)

36.22

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
IMPDH	PF00478	1 - 188	2.1e-15	IMP dehydrogenase / GMP reductase domain
IMPDH	PF00478	185 - 247	1.4e-21	IMP dehydrogenase / GMP reductase domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000729)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G16350 AT1G79470
fragaria_vesca	FvH4_3g14430 FvH4_3g14430
malus_domestica	MD05G1237000.v1.1 MD05G1237500.v1.1 MD10G1213800.v1.1
prunus_persica	Prupe.4G129200_v2.0.a1 Prupe.4G129200_v2.0.a1
pyrus_communis	pycom05g21380 pycom10g18050 pycom10g18080 pycom10g18140 pycom10g18190
rosa_chinensis	RchiOBHm_Chr1g0350061 RchiOBHm_Chr2g0101951 RchiOBHm_Chr2g0155871 RchiOBHm_Chr3g0468611 RchiOBHm_Chr3g0493461 RchiOBHm_Chr4g0401281 RchiOBHm_Chr4g0402021 RchiOBHm_Chr5g0023561 RchiOBHm_Chr5g0023571 RchiOBHm_Chr5g0023741 RchiOBHm_Chr7g0231801 RchiOBHm_Chr7g0234111 RchiOBHm_Chr7g0238791 RchiOBHm_Chr7g0239601
rosa_laevigata	RLG00000032733
rosa_multiflora	Rmu_co8005014.1_g000001 Rmu_co8223904.1_g000001 Rmu_sc0000087.1_g000007 Rmu_sc0000110.1_g000028 Rmu_sc0000172.1_g000003 Rmu_sc0000689.1_g000019 Rmu_sc0000870.1_g000014 Rmu_sc0001372.1_g000011 Rmu_sc0001516.1_g000086 Rmu_sc0001653.1_g000008 Rmu_sc0002862.1_g000001 Rmu_sc0002862.1_g000002 Rmu_sc0008652.1_g000002 Rmu_sc0011789.1_g000002 Rmu_sc0013252.1_g000001 Rmu_sc0017256.1_g000001 Rmu_sc0017907.1_g000002 Rmu_sc0017907.1_g000003 Rmu_sc0018737.1_g000003 Rmu_sc0020536.1_g000001 Rmu_sc0025127.1_g000001 Rmu_sc0028608.1_g000001 Rmu_sc0029703.1_g000001 Rmu_ssc0000027.1_g000015
rosa_roxburghii	Rroxscaffold_1G00055450
rosa_rugosa	Rorug03G0326300 Rorug05G0079400 Rorug05G0352300
rosa_samantha	Rh5AG167200 Rh5AG169300 Rh5BG166700 Rh5CG181100 Rh5CG182300 Rh5DG168600 Rh6BG409700
rosa_wichuraiana	Rw0G001580 Rw0G004990 Rw1G017410 Rw2G027840 Rw4G002740 Rw5G015190 Rw5G015310 Rw7G033830

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	3 cut(s)	299, 431, 529
Acc65I	GGTACC	1 cut(s)	474
AccB1I	GGYRCC	3 cut(s)	200, 233, 474
AccBSI	CCGCTC	1 cut(s)	463
AccI	GTMKAC	1 cut(s)	435
AccII	CGCG	2 cut(s)	126, 273
AclWI	GGATC	1 cut(s)	102
AcoI	YGGCCR	2 cut(s)	27, 39
AcsI	RAATTY	1 cut(s)	643
AcyI	GRCGYC	2 cut(s)	201, 234
AfaI	GTAC	4 cut(s)	476, 575, 590, 703
AfiI	CCNNNNNNNGG	6 cut(s)	277, 363, 403, 484, 485, 729
AgsI	TTSAA	1 cut(s)	193
AhdI	GACNNNNNGTC	1 cut(s)	630
AjiI	CACGTC	2 cut(s)	403, 457
AjnI	CCWGG	1 cut(s)	90
AluBI	AGCT	4 cut(s)	250, 286, 327, 354
AluI	AGCT	4 cut(s)	250, 286, 327, 354
Alw21I	GWGCWC	1 cut(s)	356
Alw26I	GTCTC	2 cut(s)	37, 159
AlwI	GGATC	1 cut(s)	102
Ama87I	CYCGRG	1 cut(s)	159
AoxI	GGCC	5 cut(s)	27, 39, 93, 118, 394
ApoI	RAATTY	1 cut(s)	643
Asp718I	GGTACC	1 cut(s)	474
AspLEI	GCGC	3 cut(s)	203, 236, 722
AsuHPI	GGTGA	5 cut(s)	4, 214, 292, 427, 634
AvaI	CYCGRG	1 cut(s)	159
BanI	GGYRCC	3 cut(s)	200, 233, 474
BanII	GRGCYC	1 cut(s)	356
BbsI	GAAGAC	1 cut(s)	142
Bbv12I	GWGCWC	1 cut(s)	356
BccI	CCATC	3 cut(s)	406, 659, 676
BceAI	ACGGC	4 cut(s)	14, 214, 381, 707
BciT130I	CCWGG	1 cut(s)	92
BclI	TGATCA	1 cut(s)	567
BcoDI	GTCTC	2 cut(s)	37, 159
BfoI	RGCGCY	2 cut(s)	204, 237
BisI	GCNGC	9 cut(s)	42, 52, 78, 96, 121, 124, 271, 408, 513
BlsI	GCNGC	9 cut(s)	43, 53, 79, 97, 122, 125, 272, 409, 514
Bme1390I	CCNGG	1 cut(s)	92
BmeRI	GACNNNNNGTC	1 cut(s)	630
BmeT110I	CYCGRG	1 cut(s)	159
BmgBI	CACGTC	2 cut(s)	403, 457
BmiI	GGNNCC	4 cut(s)	202, 235, 476, 694
BmrFI	CCNGG	1 cut(s)	92
BmsI	GCATC	3 cut(s)	63, 69, 180
BpiI	GAAGAC	1 cut(s)	142
BpuEI	CTTGAG	1 cut(s)	693
BsaHI	GRCGYC	2 cut(s)	201, 234
BsaI	GGTCTC	1 cut(s)	159
BsaJI	CCNNGG	6 cut(s)	36, 46, 99, 160, 196, 347
BsaXI	ACNNNNNCTCC	2 cut(s)	65, 95
Bsc4I	CCNNNNNNNGG	6 cut(s)	277, 363, 403, 484, 485, 729
BseBI	CCWGG	1 cut(s)	92
BseDI	CCNNGG	6 cut(s)	36, 46, 99, 160, 196, 347
BseGI	GGATG	4 cut(s)	60, 171, 607, 687
BseLI	CCNNNNNNNGG	6 cut(s)	277, 363, 403, 484, 485, 729
BseMII	CTCAG	1 cut(s)	606
BseRI	GAGGAG	4 cut(s)	73, 177, 389, 566
Bsh1236I	CGCG	2 cut(s)	126, 273
BshFI	GGCC	5 cut(s)	29, 41, 95, 120, 396
BshNI	GGYRCC	3 cut(s)	200, 233, 474
BsiHKAI	GWGCWC	1 cut(s)	356
BsiHKCI	CYCGRG	1 cut(s)	159
BsiSI	CCGG	1 cut(s)	231
BslFI	GGGAC	6 cut(s)	4, 113, 142, 434, 535, 747
BslI	CCNNNNNNNGG	6 cut(s)	277, 363, 403, 484, 485, 729
BsmAI	GTCTC	2 cut(s)	37, 159
BsmBI	CGTCTC	1 cut(s)	37
BsmFI	GGGAC	6 cut(s)	4, 113, 142, 434, 535, 747
BsnI	GGCC	5 cut(s)	29, 41, 95, 120, 396
Bso31I	GGTCTC	1 cut(s)	159
BsoBI	CYCGRG	1 cut(s)	159
Bsp1286I	GDGCHC	1 cut(s)	356
Bsp143I	GATC	2 cut(s)	107, 567
Bsp19I	CCATGG	2 cut(s)	36, 99
BspANI	GGCC	5 cut(s)	29, 41, 95, 120, 396
BspCNI	CTCAG	1 cut(s)	605
BspFNI	CGCG	2 cut(s)	126, 273
BspLI	GGNNCC	4 cut(s)	202, 235, 476, 694
BspPI	GGATC	1 cut(s)	102
BspT107I	GGYRCC	3 cut(s)	200, 233, 474
BspTNI	GGTCTC	1 cut(s)	159
BsrBI	CCGCTC	1 cut(s)	463
BssECI	CCNNGG	6 cut(s)	36, 46, 99, 160, 196, 347
BssMI	GATC	2 cut(s)	107, 567
BssNI	GRCGYC	2 cut(s)	201, 234
BssT1I	CCWWGG	3 cut(s)	36, 99, 347
Bst2UI	CCWGG	1 cut(s)	92
Bst4CI	ACNGT	2 cut(s)	10, 628
BstACI	GRCGYC	2 cut(s)	201, 234
BstC8I	GCNNGC	2 cut(s)	268, 288
BstDEI	CTNAG	1 cut(s)	592
BstDSI	CCRYGG	3 cut(s)	36, 99, 196
BstF5I	GGATG	4 cut(s)	60, 171, 607, 687
BstFNI	CGCG	2 cut(s)	126, 273
BstH2I	RGCGCY	2 cut(s)	204, 237
BstHHI	GCGC	3 cut(s)	203, 236, 722
BstKTI	GATC	2 cut(s)	110, 570
BstMAI	GTCTC	2 cut(s)	37, 159
BstMBI	GATC	2 cut(s)	107, 567
BstMWI	GCNNNNNNNGC	2 cut(s)	57, 726
BstNI	CCWGG	1 cut(s)	92
BstSCI	CCNGG	1 cut(s)	90
BstUI	CGCG	2 cut(s)	126, 273
BstV2I	GAAGAC	1 cut(s)	142
BstX2I	RGATCY	1 cut(s)	107
BstXI	CCANNNNNNTGG	1 cut(s)	253
BstYI	RGATCY	1 cut(s)	107
BsuRI	GGCC	5 cut(s)	29, 41, 95, 120, 396
BtgI	CCRYGG	3 cut(s)	36, 99, 196
BtgZI	GCGATG	1 cut(s)	425
BtrI	CACGTC	2 cut(s)	403, 457
BtsCI	GGATG	4 cut(s)	60, 171, 607, 687
Cac8I	GCNNGC	2 cut(s)	268, 288
CfoI	GCGC	3 cut(s)	203, 236, 722
CseI	GACGC	1 cut(s)	115
Csp6I	GTAC	4 cut(s)	475, 574, 589, 702
CviAII	CATG	8 cut(s)	25, 37, 100, 154, 262, 319, 337, 382
CviQI	GTAC	4 cut(s)	475, 574, 589, 702
DdeI	CTNAG	1 cut(s)	592
DinI	GGCGCC	2 cut(s)	202, 235
DpnI	GATC	2 cut(s)	109, 569
DpnII	GATC	2 cut(s)	107, 567
DrdI	GACNNNNNNGTC	3 cut(s)	299, 431, 529
DriI	GACNNNNNGTC	1 cut(s)	630
DseDI	GACNNNNNNGTC	3 cut(s)	299, 431, 529
EaeI	YGGCCR	2 cut(s)	27, 39
Eam1105I	GACNNNNNGTC	1 cut(s)	630
EciI	GGCGGA	2 cut(s)	305, 401
Ecl136II	GAGCTC	1 cut(s)	354
Eco130I	CCWWGG	3 cut(s)	36, 99, 347
Eco24I	GRGCYC	1 cut(s)	356
Eco31I	GGTCTC	1 cut(s)	159
Eco53kI	GAGCTC	1 cut(s)	354
Eco88I	CYCGRG	1 cut(s)	159
EcoICRI	GAGCTC	1 cut(s)	354
EcoRII	CCWGG	1 cut(s)	90
EcoT14I	CCWWGG	3 cut(s)	36, 99, 347
EcoT38I	GRGCYC	1 cut(s)	356
EgeI	GGCGCC	2 cut(s)	202, 235
EheI	GGCGCC	2 cut(s)	202, 235
ErhI	CCWWGG	3 cut(s)	36, 99, 347
Esp3I	CGTCTC	1 cut(s)	37
FaeI	CATG	8 cut(s)	28, 40, 103, 157, 265, 322, 340, 385
FaiI	YATR	8 cut(s)	26, 38, 101, 155, 263, 320, 338, 383
FaqI	GGGAC	6 cut(s)	4, 113, 142, 434, 535, 747
FatI	CATG	8 cut(s)	24, 36, 99, 153, 261, 318, 336, 381
FbaI	TGATCA	1 cut(s)	567
FblI	GTMKAC	1 cut(s)	435
Fnu4HI	GCNGC	9 cut(s)	42, 52, 78, 96, 121, 124, 271, 408, 513
FokI	GGATG	4 cut(s)	47, 158, 614, 694
FriOI	GRGCYC	1 cut(s)	356
Fsp4HI	GCNGC	9 cut(s)	42, 52, 78, 96, 121, 124, 271, 408, 513
GlaI	GCGC	3 cut(s)	202, 235, 721
GluI	GCNGC	9 cut(s)	42, 52, 78, 96, 121, 124, 271, 408, 513
HaeII	RGCGCY	2 cut(s)	204, 237
HaeIII	GGCC	5 cut(s)	29, 41, 95, 120, 396
HapII	CCGG	1 cut(s)	231
HgaI	GACGC	1 cut(s)	115
HhaI	GCGC	3 cut(s)	203, 236, 722
Hin1I	GRCGYC	2 cut(s)	201, 234
Hin1II	CATG	8 cut(s)	28, 40, 103, 157, 265, 322, 340, 385
Hin6I	GCGC	3 cut(s)	201, 234, 720
HinP1I	GCGC	3 cut(s)	201, 234, 720
HincII	GTYRAC	1 cut(s)	436
HindII	GTYRAC	1 cut(s)	436
HindIII	AAGCTT	1 cut(s)	248
HinfI	GANTC	5 cut(s)	17, 227, 530, 631, 649
HpaII	CCGG	1 cut(s)	231
HphI	GGTGA	5 cut(s)	4, 214, 292, 427, 634
Hpy166II	GTNNAC	1 cut(s)	436
Hpy188I	TCNGA	5 cut(s)	88, 107, 358, 535, 595
Hpy188III	TCNNGA	4 cut(s)	159, 304, 580, 710
Hpy8I	GTNNAC	1 cut(s)	436
Hpy99I	CGWCG	5 cut(s)	185, 188, 428, 440, 728
HpyAV	CCTTC	2 cut(s)	442, 496
HpyCH4III	ACNGT	2 cut(s)	10, 628
HpyCH4IV	ACGT	5 cut(s)	186, 213, 402, 438, 456
HpyF10VI	GCNNNNNNNGC	2 cut(s)	57, 726
HpyF3I	CTNAG	1 cut(s)	592
HpySE526I	ACGT	5 cut(s)	186, 213, 402, 438, 456
Hsp92I	GRCGYC	2 cut(s)	201, 234
Hsp92II	CATG	8 cut(s)	28, 40, 103, 157, 265, 322, 340, 385
HspAI	GCGC	3 cut(s)	201, 234, 720
KasI	GGCGCC	2 cut(s)	200, 233
KpnI	GGTACC	1 cut(s)	478
Ksp22I	TGATCA	1 cut(s)	567
Kzo9I	GATC	2 cut(s)	107, 567
LmnI	GCTCC	4 cut(s)	351, 359, 460, 698
LpnPI	CCDG	9 cut(s)	77, 104, 244, 272, 620, 638, 642, 675, 715
LweI	GCATC	3 cut(s)	63, 69, 180
MaeII	ACGT	5 cut(s)	186, 213, 402, 438, 456
MaeIII	GTNAC	4 cut(s)	10, 220, 398, 622
MalI	GATC	2 cut(s)	109, 569
MbiI	CCGCTC	1 cut(s)	463
MboI	GATC	2 cut(s)	107, 567
MboII	GAAGA	2 cut(s)	142, 379
MflI	RGATCY	1 cut(s)	107
MhlI	GDGCHC	1 cut(s)	356
MluCI	AATT	1 cut(s)	643
Mly113I	GGCGCC	2 cut(s)	201, 234
MlyI	GAGTC	4 cut(s)	26, 236, 539, 640
MmeI	TCCRAC	3 cut(s)	96, 111, 513
MspA1I	CMGCKG	1 cut(s)	327
MspI	CCGG	1 cut(s)	231
MspR9I	CCNGG	1 cut(s)	92
MvaI	CCWGG	1 cut(s)	92
MvnI	CGCG	2 cut(s)	126, 273
MwoI	GCNNNNNNNGC	2 cut(s)	57, 726
NarI	GGCGCC	2 cut(s)	201, 234
NcoI	CCATGG	2 cut(s)	36, 99
NdeII	GATC	2 cut(s)	107, 567
NlaIII	CATG	8 cut(s)	28, 40, 103, 157, 265, 322, 340, 385
NlaIV	GGNNCC	4 cut(s)	202, 235, 476, 694
NmeAIII	GCCGAG	1 cut(s)	27
NmuCI	GTSAC	4 cut(s)	10, 220, 398, 622
PcsI	WCGNNNNNNNCGW	1 cut(s)	432
PfeI	GAWTC	1 cut(s)	649
PflFI	GACNNNGTC	1 cut(s)	8
PkrI	GCNGC	9 cut(s)	43, 53, 79, 97, 122, 125, 272, 409, 514
PleI	GAGTC	4 cut(s)	25, 235, 538, 639
PluTI	GGCGCC	2 cut(s)	204, 237
PpsI	GAGTC	4 cut(s)	25, 235, 538, 639
Psp124BI	GAGCTC	1 cut(s)	356
Psp6I	CCWGG	1 cut(s)	90
PspGI	CCWGG	1 cut(s)	90
PspN4I	GGNNCC	4 cut(s)	202, 235, 476, 694
PsrI	GAACNNNNNNTAC	2 cut(s)	458, 490
PsuI	RGATCY	1 cut(s)	107
PsyI	GACNNNGTC	1 cut(s)	8
PvuII	CAGCTG	1 cut(s)	327
RsaI	GTAC	4 cut(s)	476, 575, 590, 703
RsaNI	GTAC	4 cut(s)	475, 574, 589, 702
SacI	GAGCTC	1 cut(s)	356
SalI	GTCGAC	1 cut(s)	434
SatI	GCNGC	9 cut(s)	42, 52, 78, 96, 121, 124, 271, 408, 513
Sau3AI	GATC	2 cut(s)	107, 567
SchI	GAGTC	4 cut(s)	26, 236, 539, 640
ScrFI	CCNGG	1 cut(s)	92
SduI	GDGCHC	1 cut(s)	356
SfaNI	GCATC	3 cut(s)	63, 69, 180
SfoI	GGCGCC	2 cut(s)	202, 235
SmlI	CTYRAG	1 cut(s)	708
SmoI	CTYRAG	1 cut(s)	708
Sse9I	AATT	1 cut(s)	643
SspDI	GGCGCC	2 cut(s)	200, 233
SstI	GAGCTC	1 cut(s)	356
StyD4I	CCNGG	1 cut(s)	90
StyI	CCWWGG	3 cut(s)	36, 99, 347
TaaI	ACNGT	2 cut(s)	10, 628
TaiI	ACGT	5 cut(s)	189, 216, 405, 441, 459
TaqI	TCGA	1 cut(s)	435
TasI	AATT	1 cut(s)	643
TatI	WGTACW	3 cut(s)	573, 588, 701
TauI	GCSGC	9 cut(s)	44, 54, 80, 98, 123, 126, 273, 410, 515
TfiI	GAWTC	1 cut(s)	649
TseFI	GTSAC	4 cut(s)	10, 220, 398, 622
Tsp45I	GTSAC	4 cut(s)	10, 220, 398, 622
TspDTI	ATGAA	2 cut(s)	142, 370
TspGWI	ACGGA	1 cut(s)	100
Tth111I	GACNNNGTC	1 cut(s)	8
XapI	RAATTY	1 cut(s)	643
XmiI	GTMKAC	1 cut(s)	435

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.