Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0000729

Physical Location & Seq

Genomic Coordinates Forward (+)

55553811 .. 55554472

Gene Structure 662 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ20774

Sequence Viewer

CDS Protein Promoter (2k)

Length: 585 bp

ATGGTGAGCCGCGATTGGGTGAAGCTGGCAGACAAGGAGGTCAAGATTTACGATTACATGATCAGCTGTAAGGACATGGTTTTGCCTTGGAGCTCCGATTTGGGGAAGATTGAGGAGTTCATGGCGGAGAAAGGCCGTGACGTGGCAGCACCGGTGAGGGACGATGAGGTTGTCGATGTTGTGGAGAAGGAGGACGTGGAGCGGATCAAGGGGTACCCGAAGTTGGGGGTCGGGTCGGTTGGGCCCGACGGGTCGTGGAAGGTCGGGGCGGCGATAAGGATGAGGGAGTCGGATAAGGAGAGATTAGAGGAGTTGGTGAAGGCTGGGATTGATGTGGTGGTGTTGGATAGCTCACAGGGGAACTCCATTTATCAGATTGAGTTGATCAAGTACATCAAGAAAATGTACTCAGATTTGGATGTGGTTTGTGGGAATGTGTTGACTGTGAGTCAGGCGCAGAATTTGATTCTGGCTGGTGTTGATGGGTTGAGGGTTGGGATGGGGTCTGGCTCCATTTGTACTACTCAAGAGGTTTGCGTCGGCGGCAGGGGACAGTGGATGAACATTGGACTGAGGACTTGTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0003938 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006139 GO:0006163 GO:0006164 GO:0006183 GO:0006725 GO:0006753 GO:0006793 GO:0006796 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009116 GO:0009117 GO:0009119 GO:0009141 GO:0009142 GO:0009144 GO:0009145 GO:0009150 GO:0009152 GO:0009163 GO:0009165 GO:0009199 GO:0009201 GO:0009205 GO:0009206 GO:0009259 GO:0009260 GO:0009719 GO:0009725 GO:0009735 GO:0009987 GO:0010033 GO:0016491 GO:0016614 GO:0016616 GO:0018130 GO:0019438 GO:0019637 GO:0019693 GO:0034404 GO:0034641 GO:0034654 GO:0042221 GO:0042278 GO:0042451 GO:0042455 GO:0044237 GO:0044238 GO:0044249 GO:0044271 GO:0044281 GO:0044283 GO:0044424 GO:0044444 GO:0044464 GO:0046039 GO:0046128 GO:0046129 GO:0046390 GO:0046483 GO:0050896 GO:0055086 GO:0055114 GO:0071704 GO:0072521 GO:0072522 GO:0090407 GO:1901068 GO:1901070 GO:1901135 GO:1901137 GO:1901293 GO:1901360 GO:1901362 GO:1901564 GO:1901566 GO:1901576 GO:1901657 GO:1901659

KEGG Pathways

Metabolic & Signaling

ko00230 ko00983 ko01100 ko01110 map00230 map00983 map01100 map01110

Pfam Domains

Protein Families

IMPDH

Protein Analysis

194

Amino Acids

21.35

Weight (kDa)

4.88

Isoelectric Point (pI)

32.8

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
IMPDH	PF00478	64 - 189	7.5e-35	IMP dehydrogenase / GMP reductase domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000729)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G16350 AT1G79470
fragaria_vesca	FvH4_3g14430 FvH4_3g14430
malus_domestica	MD05G1237000.v1.1 MD05G1237500.v1.1 MD10G1213800.v1.1
prunus_persica	Prupe.4G129200_v2.0.a1 Prupe.4G129200_v2.0.a1
pyrus_communis	pycom05g21380 pycom10g18050 pycom10g18080 pycom10g18140 pycom10g18190
rosa_chinensis	RchiOBHm_Chr1g0350061 RchiOBHm_Chr2g0101951 RchiOBHm_Chr2g0155871 RchiOBHm_Chr3g0468611 RchiOBHm_Chr3g0493461 RchiOBHm_Chr4g0401281 RchiOBHm_Chr4g0402021 RchiOBHm_Chr5g0023561 RchiOBHm_Chr5g0023571 RchiOBHm_Chr5g0023741 RchiOBHm_Chr7g0231801 RchiOBHm_Chr7g0234111 RchiOBHm_Chr7g0238791 RchiOBHm_Chr7g0239601
rosa_laevigata	RLG00000032733
rosa_multiflora	Rmu_co8005014.1_g000001 Rmu_co8223904.1_g000001 Rmu_sc0000087.1_g000007 Rmu_sc0000110.1_g000028 Rmu_sc0000172.1_g000003 Rmu_sc0000689.1_g000019 Rmu_sc0000870.1_g000014 Rmu_sc0001372.1_g000011 Rmu_sc0001516.1_g000086 Rmu_sc0001653.1_g000008 Rmu_sc0002862.1_g000001 Rmu_sc0002862.1_g000002 Rmu_sc0008652.1_g000002 Rmu_sc0011789.1_g000002 Rmu_sc0013252.1_g000001 Rmu_sc0017256.1_g000001 Rmu_sc0017907.1_g000002 Rmu_sc0017907.1_g000003 Rmu_sc0018737.1_g000003 Rmu_sc0020536.1_g000001 Rmu_sc0025127.1_g000001 Rmu_sc0028608.1_g000001 Rmu_sc0029703.1_g000001 Rmu_ssc0000027.1_g000015
rosa_roxburghii	Rroxscaffold_1G00055450
rosa_rugosa	Rorug03G0326300 Rorug05G0079400 Rorug05G0352300
rosa_samantha	Rh5AG167200 Rh5AG169300 Rh5BG166700 Rh5CG181100 Rh5CG182300 Rh5DG168600 Rh6BG409700
rosa_wichuraiana	Rw0G001580 Rw0G004990 Rw1G017410 Rw2G027840 Rw4G002740 Rw5G015190 Rw5G015310 Rw7G033830

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	38
Acc65I	GGTACC	1 cut(s)	213
AccB1I	GGYRCC	1 cut(s)	213
AccBSI	CCGCTC	1 cut(s)	202
AccII	CGCG	1 cut(s)	12
AciI	CCGC	5 cut(s)	10, 125, 202, 269, 543
AclWI	GGATC	1 cut(s)	212
AcsI	RAATTY	1 cut(s)	460
AfaI	GTAC	4 cut(s)	215, 392, 407, 520
AfiI	CCNNNNNNNGG	5 cut(s)	16, 102, 142, 223, 224
AgeI	ACCGGT	1 cut(s)	151
AhdI	GACNNNNNGTC	1 cut(s)	447
AjiI	CACGTC	2 cut(s)	142, 196
AluBI	AGCT	4 cut(s)	25, 66, 93, 351
AluI	AGCT	4 cut(s)	25, 66, 93, 351
Alw21I	GWGCWC	1 cut(s)	95
AlwI	GGATC	1 cut(s)	212
AoxI	GGCC	2 cut(s)	133, 242
ApaI	GGGCCC	1 cut(s)	246
ApeKI	GCWGC	1 cut(s)	146
ApoI	RAATTY	1 cut(s)	460
AsiGI	ACCGGT	1 cut(s)	151
Asp718I	GGTACC	1 cut(s)	213
AspLEI	GCGC	1 cut(s)	457
AspS9I	GGNCC	2 cut(s)	242, 243
AsuHPI	GGTGA	4 cut(s)	16, 31, 166, 328
BaeGI	GKGCMC	1 cut(s)	246
BanI	GGYRCC	1 cut(s)	213
BanII	GRGCYC	2 cut(s)	95, 246
Bbv12I	GWGCWC	1 cut(s)	95
BbvI	GCAGC	1 cut(s)	158
BccI	CCATC	2 cut(s)	476, 493
BceAI	ACGGC	1 cut(s)	120
BclI	TGATCA	2 cut(s)	60, 384
BisI	GCNGC	4 cut(s)	10, 147, 270, 544
BlsI	GCNGC	4 cut(s)	11, 148, 271, 545
BmeRI	GACNNNNNGTC	1 cut(s)	447
BmgBI	CACGTC	2 cut(s)	142, 196
BmgT120I	GGNCC	2 cut(s)	242, 243
BmiI	GGNNCC	3 cut(s)	215, 244, 511
BpuEI	CTTGAG	1 cut(s)	510
BsaJI	CCNNGG	1 cut(s)	86
BsaWI	WCCGGW	1 cut(s)	151
Bsc4I	CCNNNNNNNGG	5 cut(s)	16, 102, 142, 223, 224
Bse118I	RCCGGY	1 cut(s)	151
BseDI	CCNNGG	1 cut(s)	86
BseGI	GGATG	4 cut(s)	285, 424, 504, 564
BseLI	CCNNNNNNNGG	5 cut(s)	16, 102, 142, 223, 224
BseMII	CTCAG	2 cut(s)	423, 563
BseRI	GAGGAG	2 cut(s)	128, 323
BseSI	GKGCMC	1 cut(s)	246
BseXI	GCAGC	1 cut(s)	158
BseYI	CCCAGC	1 cut(s)	323
Bsh1236I	CGCG	1 cut(s)	12
BshFI	GGCC	2 cut(s)	135, 244
BshNI	GGYRCC	1 cut(s)	213
BshTI	ACCGGT	1 cut(s)	151
BsiHKAI	GWGCWC	1 cut(s)	95
BsiSI	CCGG	1 cut(s)	152
BslFI	GGGAC	2 cut(s)	173, 564
BslI	CCNNNNNNNGG	5 cut(s)	16, 102, 142, 223, 224
BsmFI	GGGAC	2 cut(s)	173, 564
BsnI	GGCC	2 cut(s)	135, 244
Bsp120I	GGGCCC	1 cut(s)	242
Bsp1286I	GDGCHC	2 cut(s)	95, 246
Bsp143I	GATC	3 cut(s)	60, 204, 384
BspACI	CCGC	5 cut(s)	10, 125, 202, 269, 543
BspANI	GGCC	2 cut(s)	135, 244
BspCNI	CTCAG	2 cut(s)	422, 564
BspFNI	CGCG	1 cut(s)	12
BspLI	GGNNCC	3 cut(s)	215, 244, 511
BspPI	GGATC	1 cut(s)	212
BspT107I	GGYRCC	1 cut(s)	213
BsrBI	CCGCTC	1 cut(s)	202
BsrFI	RCCGGY	1 cut(s)	151
BssAI	RCCGGY	1 cut(s)	151
BssECI	CCNNGG	1 cut(s)	86
BssMI	GATC	3 cut(s)	60, 204, 384
BssT1I	CCWWGG	1 cut(s)	86
Bst4CI	ACNGT	2 cut(s)	445, 555
BstC8I	GCNNGC	1 cut(s)	27
BstDEI	CTNAG	2 cut(s)	409, 572
BstF5I	GGATG	4 cut(s)	285, 424, 504, 564
BstFNI	CGCG	1 cut(s)	12
BstHHI	GCGC	1 cut(s)	457
BstKTI	GATC	3 cut(s)	63, 207, 387
BstMBI	GATC	3 cut(s)	60, 204, 384
BstMWI	GCNNNNNNNGC	1 cut(s)	543
BstSLI	GKGCMC	1 cut(s)	246
BstUI	CGCG	1 cut(s)	12
BstV1I	GCAGC	1 cut(s)	158
BsuRI	GGCC	2 cut(s)	135, 244
BtrI	CACGTC	2 cut(s)	142, 196
BtsCI	GGATG	4 cut(s)	285, 424, 504, 564
BtsIMutI	CAGTG	1 cut(s)	560
Cac8I	GCNNGC	1 cut(s)	27
CfoI	GCGC	1 cut(s)	457
Cfr10I	RCCGGY	1 cut(s)	151
Cfr13I	GGNCC	2 cut(s)	242, 243
CseI	GACGC	1 cut(s)	526
Csp6I	GTAC	4 cut(s)	214, 391, 406, 519
CspAI	ACCGGT	1 cut(s)	151
CviAII	CATG	3 cut(s)	58, 76, 121
CviQI	GTAC	4 cut(s)	214, 391, 406, 519
DdeI	CTNAG	2 cut(s)	409, 572
DpnI	GATC	3 cut(s)	62, 206, 386
DpnII	GATC	3 cut(s)	60, 204, 384
DrdI	GACNNNNNNGTC	1 cut(s)	38
DriI	GACNNNNNGTC	1 cut(s)	447
DseDI	GACNNNNNNGTC	1 cut(s)	38
Eam1105I	GACNNNNNGTC	1 cut(s)	447
EciI	GGCGGA	1 cut(s)	140
Ecl136II	GAGCTC	1 cut(s)	93
Eco130I	CCWWGG	1 cut(s)	86
Eco24I	GRGCYC	2 cut(s)	95, 246
Eco53kI	GAGCTC	1 cut(s)	93
EcoICRI	GAGCTC	1 cut(s)	93
EcoT14I	CCWWGG	1 cut(s)	86
EcoT38I	GRGCYC	2 cut(s)	95, 246
ErhI	CCWWGG	1 cut(s)	86
FaeI	CATG	3 cut(s)	61, 79, 124
FaiI	YATR	3 cut(s)	59, 77, 122
FaqI	GGGAC	2 cut(s)	173, 564
FatI	CATG	3 cut(s)	57, 75, 120
FbaI	TGATCA	2 cut(s)	60, 384
Fnu4HI	GCNGC	4 cut(s)	10, 147, 270, 544
FokI	GGATG	4 cut(s)	292, 431, 511, 571
FriOI	GRGCYC	2 cut(s)	95, 246
Fsp4HI	GCNGC	4 cut(s)	10, 147, 270, 544
GlaI	GCGC	1 cut(s)	456
GluI	GCNGC	4 cut(s)	10, 147, 270, 544
GsaI	CCCAGC	1 cut(s)	327
HaeIII	GGCC	2 cut(s)	135, 244
HapII	CCGG	1 cut(s)	152
HgaI	GACGC	1 cut(s)	526
HhaI	GCGC	1 cut(s)	457
Hin1II	CATG	3 cut(s)	61, 79, 124
Hin6I	GCGC	1 cut(s)	455
HinP1I	GCGC	1 cut(s)	455
HincII	GTYRAC	1 cut(s)	441
HindII	GTYRAC	1 cut(s)	441
HinfI	GANTC	3 cut(s)	287, 448, 466
HpaII	CCGG	1 cut(s)	152
HphI	GGTGA	4 cut(s)	16, 31, 166, 328
Hpy166II	GTNNAC	1 cut(s)	441
Hpy188I	TCNGA	4 cut(s)	97, 292, 375, 412
Hpy188III	TCNNGA	3 cut(s)	43, 397, 527
Hpy8I	GTNNAC	1 cut(s)	441
Hpy99I	CGWCG	2 cut(s)	251, 542
HpyAV	CCTTC	3 cut(s)	181, 253, 313
HpyCH4III	ACNGT	2 cut(s)	445, 555
HpyCH4IV	ACGT	2 cut(s)	141, 195
HpyF10VI	GCNNNNNNNGC	1 cut(s)	543
HpyF3I	CTNAG	2 cut(s)	409, 572
HpySE526I	ACGT	2 cut(s)	141, 195
Hsp92II	CATG	3 cut(s)	61, 79, 124
HspAI	GCGC	1 cut(s)	455
KpnI	GGTACC	1 cut(s)	217
Ksp22I	TGATCA	2 cut(s)	60, 384
Kzo9I	GATC	3 cut(s)	60, 204, 384
LmnI	GCTCC	4 cut(s)	90, 98, 199, 515
LpnPI	CCDG	9 cut(s)	11, 165, 309, 341, 437, 455, 459, 492, 532
Lsp1109I	GCAGC	1 cut(s)	158
MaeII	ACGT	2 cut(s)	141, 195
MaeIII	GTNAC	1 cut(s)	137
MalI	GATC	3 cut(s)	62, 206, 386
MbiI	CCGCTC	1 cut(s)	202
MboI	GATC	3 cut(s)	60, 204, 384
MboII	GAAGA	1 cut(s)	118
MhlI	GDGCHC	2 cut(s)	95, 246
MluCI	AATT	1 cut(s)	460
MlyI	GAGTC	2 cut(s)	296, 457
MmeI	TCCRAC	2 cut(s)	270, 324
MspA1I	CMGCKG	1 cut(s)	66
MspI	CCGG	1 cut(s)	152
MvnI	CGCG	1 cut(s)	12
MwoI	GCNNNNNNNGC	1 cut(s)	543
NdeII	GATC	3 cut(s)	60, 204, 384
NlaIII	CATG	3 cut(s)	61, 79, 124
NlaIV	GGNNCC	3 cut(s)	215, 244, 511
NmuCI	GTSAC	1 cut(s)	137
PfeI	GAWTC	1 cut(s)	466
PinAI	ACCGGT	1 cut(s)	151
PkrI	GCNGC	4 cut(s)	11, 148, 271, 545
PleI	GAGTC	2 cut(s)	295, 456
PpsI	GAGTC	2 cut(s)	295, 456
Psp124BI	GAGCTC	1 cut(s)	95
PspFI	CCCAGC	1 cut(s)	323
PspN4I	GGNNCC	3 cut(s)	215, 244, 511
PspOMI	GGGCCC	1 cut(s)	242
PspPI	GGNCC	2 cut(s)	242, 243
PvuII	CAGCTG	1 cut(s)	66
RsaI	GTAC	4 cut(s)	215, 392, 407, 520
RsaNI	GTAC	4 cut(s)	214, 391, 406, 519
SacI	GAGCTC	1 cut(s)	95
SatI	GCNGC	4 cut(s)	10, 147, 270, 544
Sau3AI	GATC	3 cut(s)	60, 204, 384
Sau96I	GGNCC	2 cut(s)	242, 243
SchI	GAGTC	2 cut(s)	296, 457
SduI	GDGCHC	2 cut(s)	95, 246
SgrAI	CRCCGGYG	1 cut(s)	151
SmlI	CTYRAG	1 cut(s)	525
SmoI	CTYRAG	1 cut(s)	525
Sse9I	AATT	1 cut(s)	460
SsiI	CCGC	5 cut(s)	10, 125, 202, 269, 543
SstI	GAGCTC	1 cut(s)	95
StyI	CCWWGG	1 cut(s)	86
TaaI	ACNGT	2 cut(s)	445, 555
TaiI	ACGT	2 cut(s)	144, 198
TaqI	TCGA	1 cut(s)	174
TasI	AATT	1 cut(s)	460
TatI	WGTACW	3 cut(s)	390, 405, 518
TauI	GCSGC	3 cut(s)	12, 272, 546
TfiI	GAWTC	1 cut(s)	466
TscAI	CASTG	1 cut(s)	560
TseFI	GTSAC	1 cut(s)	137
TseI	GCWGC	1 cut(s)	146
Tsp45I	GTSAC	1 cut(s)	137
TspDTI	ATGAA	2 cut(s)	109, 575
TspRI	CASTG	1 cut(s)	560
XapI	RAATTY	1 cut(s)	460

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.