Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0000729

Physical Location & Seq

Genomic Coordinates Reverse (-)

17607933 .. 17611415

Gene Structure 3483 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ30342

Sequence Viewer

CDS Protein Promoter (2k)

Length: 684 bp

ATGATCAAGTACATTAAGAAAATGTACTCGAATTTGGATGTGGTTGGTGGGAATGTGGTGACTGTGAGTCAGGCGCAGAATCTGATTCAAGCTGGTGTTGATGGGTTGAGGGTTGGGATGGGGTCTGGCTCCATTTGTACTACTAAAGAGGTTTGCGCCGTAGGGAGGGGACAGGCAACTGCGGTTTACAAGGTTGCCTCTGTTGCTTCACAAAGTGGCGTGCCTGTCATTGCTGATGGTGGAATTTCCAATTCTGGACACATTGTCAAGGCTTTAACCCTTGGGGCTTCTACTGTCATGATGGGGAGCTTCTTAGCTGGAAGTACTGAGGCCCCTGGGGCTTATGAGAATCAGAATGGTCGCTGGATCAAAAAATACCGAGGCATGGGCTCTCTTGAAGCGATGACAAAGGGGAGTGATCAACGGTATCTGGGAGATACAGCAAAGCTAAAGATTGCACAGGGGGTGGTTGGTGCAGTTGCAGACAAAGGTTCTGTTTTAAAGTTTGTACCGTACACAATGCAAGCAGTGAAACAAGGTTTCCAAGATCTCGGCGCTTCTTCTCTGCAGTCTGCTCATGACCTCTTAACTTCAGGGGTTCTAAGGCTAGAGGTAAGAACAGGAGCTGCTCAAGTGGAAGGTGGAGTTCATGGGTTGGTTTCTTATGAGAAGAAGTCATTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0003938 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006139 GO:0006163 GO:0006164 GO:0006183 GO:0006725 GO:0006753 GO:0006793 GO:0006796 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009116 GO:0009117 GO:0009119 GO:0009141 GO:0009142 GO:0009144 GO:0009145 GO:0009150 GO:0009152 GO:0009163 GO:0009165 GO:0009199 GO:0009201 GO:0009205 GO:0009206 GO:0009259 GO:0009260 GO:0009719 GO:0009725 GO:0009735 GO:0009987 GO:0010033 GO:0016491 GO:0016614 GO:0016616 GO:0018130 GO:0019438 GO:0019637 GO:0019693 GO:0034404 GO:0034641 GO:0034654 GO:0042221 GO:0042278 GO:0042451 GO:0042455 GO:0044237 GO:0044238 GO:0044249 GO:0044271 GO:0044281 GO:0044283 GO:0044424 GO:0044444 GO:0044464 GO:0046039 GO:0046128 GO:0046129 GO:0046390 GO:0046483 GO:0050896 GO:0055086 GO:0055114 GO:0071704 GO:0072521 GO:0072522 GO:0090407 GO:1901068 GO:1901070 GO:1901135 GO:1901137 GO:1901293 GO:1901360 GO:1901362 GO:1901564 GO:1901566 GO:1901576 GO:1901657 GO:1901659

KEGG Pathways

Metabolic & Signaling

ko00230 ko00983 ko01100 ko01110 map00230 map00983 map01100 map01110

Pfam Domains

Protein Families

IMPDH

Protein Analysis

227

Amino Acids

23.5

Weight (kDa)

9.47

Isoelectric Point (pI)

18.03

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
IMPDH	PF00478	1 - 217	2.3e-73	IMP dehydrogenase / GMP reductase domain
NMO	PF03060	17 - 112	3.5e-08	Nitronate monooxygenase
FMN_dh	PF01070	19 - 104	1.6e-07	FMN-dependent dehydrogenase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000729)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G16350 AT1G79470
fragaria_vesca	FvH4_3g14430 FvH4_3g14430
malus_domestica	MD05G1237000.v1.1 MD05G1237500.v1.1 MD10G1213800.v1.1
prunus_persica	Prupe.4G129200_v2.0.a1 Prupe.4G129200_v2.0.a1
pyrus_communis	pycom05g21380 pycom10g18050 pycom10g18080 pycom10g18140 pycom10g18190
rosa_chinensis	RchiOBHm_Chr1g0350061 RchiOBHm_Chr2g0101951 RchiOBHm_Chr2g0155871 RchiOBHm_Chr3g0468611 RchiOBHm_Chr3g0493461 RchiOBHm_Chr4g0401281 RchiOBHm_Chr4g0402021 RchiOBHm_Chr5g0023561 RchiOBHm_Chr5g0023571 RchiOBHm_Chr5g0023741 RchiOBHm_Chr7g0231801 RchiOBHm_Chr7g0234111 RchiOBHm_Chr7g0238791 RchiOBHm_Chr7g0239601
rosa_laevigata	RLG00000032733
rosa_multiflora	Rmu_co8005014.1_g000001 Rmu_co8223904.1_g000001 Rmu_sc0000087.1_g000007 Rmu_sc0000110.1_g000028 Rmu_sc0000172.1_g000003 Rmu_sc0000689.1_g000019 Rmu_sc0000870.1_g000014 Rmu_sc0001372.1_g000011 Rmu_sc0001516.1_g000086 Rmu_sc0001653.1_g000008 Rmu_sc0002862.1_g000001 Rmu_sc0002862.1_g000002 Rmu_sc0008652.1_g000002 Rmu_sc0011789.1_g000002 Rmu_sc0013252.1_g000001 Rmu_sc0017256.1_g000001 Rmu_sc0017907.1_g000002 Rmu_sc0017907.1_g000003 Rmu_sc0018737.1_g000003 Rmu_sc0020536.1_g000001 Rmu_sc0025127.1_g000001 Rmu_sc0028608.1_g000001 Rmu_sc0029703.1_g000001 Rmu_ssc0000027.1_g000015
rosa_roxburghii	Rroxscaffold_1G00055450
rosa_rugosa	Rorug03G0326300 Rorug05G0079400 Rorug05G0352300
rosa_samantha	Rh5AG167200 Rh5AG169300 Rh5BG166700 Rh5CG181100 Rh5CG182300 Rh5DG168600 Rh6BG409700
rosa_wichuraiana	Rw0G001580 Rw0G004990 Rw1G017410 Rw2G027840 Rw4G002740 Rw5G015190 Rw5G015310 Rw7G033830

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	182
AclWI	GGATC	1 cut(s)	374
AcsI	RAATTY	2 cut(s)	31, 243
AcuI	CTGAAG	1 cut(s)	576
AdeI	CACNNNGTG	1 cut(s)	215
AfaI	GTAC	6 cut(s)	11, 26, 139, 325, 510, 515
AfiI	CCNNNNNNNGG	2 cut(s)	165, 385
AgsI	TTSAA	2 cut(s)	89, 398
AhdI	GACNNNNNGTC	2 cut(s)	66, 263
AjnI	CCWGG	1 cut(s)	334
AluBI	AGCT	5 cut(s)	92, 309, 317, 448, 626
AluI	AGCT	5 cut(s)	92, 309, 317, 448, 626
AlwI	GGATC	1 cut(s)	374
AlwNI	CAGNNNCTG	2 cut(s)	82, 626
AoxI	GGCC	1 cut(s)	330
ApeKI	GCWGC	1 cut(s)	626
ApoI	RAATTY	2 cut(s)	31, 243
AspLEI	GCGC	3 cut(s)	76, 158, 557
AspS9I	GGNCC	1 cut(s)	331
AsuHPI	GGTGA	1 cut(s)	70
BanII	GRGCYC	1 cut(s)	392
BbvI	GCAGC	1 cut(s)	613
BccI	CCATC	4 cut(s)	95, 112, 230, 295
BceAI	ACGGC	1 cut(s)	143
BciT130I	CCWGG	1 cut(s)	336
BclI	TGATCA	2 cut(s)	3, 418
BfaI	CTAG	1 cut(s)	608
BfmI	CTRYAG	1 cut(s)	566
BfoI	RGCGCY	1 cut(s)	558
BglI	GCCNNNNNGGC	1 cut(s)	338
BglII	AGATCT	1 cut(s)	547
BisI	GCNGC	1 cut(s)	627
BlsI	GCNGC	1 cut(s)	628
BmcAI	AGTACT	1 cut(s)	325
Bme1390I	CCNGG	1 cut(s)	336
BmeRI	GACNNNNNGTC	2 cut(s)	66, 263
BmgT120I	GGNCC	1 cut(s)	331
BmiI	GGNNCC	2 cut(s)	130, 333
BmrFI	CCNGG	1 cut(s)	336
BpuEI	CTTGAG	1 cut(s)	615
BsaJI	CCNNGG	4 cut(s)	280, 334, 335, 379
Bsc4I	CCNNNNNNNGG	2 cut(s)	165, 385
Bse3DI	GCAATG	1 cut(s)	228
BseBI	CCWGG	1 cut(s)	336
BseDI	CCNNGG	4 cut(s)	280, 334, 335, 379
BseGI	GGATG	2 cut(s)	43, 123
BseLI	CCNNNNNNNGG	2 cut(s)	165, 385
BseMI	GCAATG	1 cut(s)	228
BseMII	CTCAG	1 cut(s)	318
BseXI	GCAGC	1 cut(s)	613
BsgI	GTGCAG	1 cut(s)	495
BshFI	GGCC	1 cut(s)	332
BslFI	GGGAC	1 cut(s)	183
BslI	CCNNNNNNNGG	2 cut(s)	165, 385
BsmFI	GGGAC	1 cut(s)	183
BsnI	GGCC	1 cut(s)	332
Bsp1286I	GDGCHC	1 cut(s)	392
Bsp143I	GATC	4 cut(s)	3, 366, 418, 547
BspACI	CCGC	1 cut(s)	182
BspANI	GGCC	1 cut(s)	332
BspCNI	CTCAG	1 cut(s)	319
BspHI	TCATGA	2 cut(s)	297, 577
BspLI	GGNNCC	2 cut(s)	130, 333
BspMAI	CTGCAG	1 cut(s)	570
BspPI	GGATC	1 cut(s)	374
BsrDI	GCAATG	1 cut(s)	228
BssECI	CCNNGG	4 cut(s)	280, 334, 335, 379
BssMI	GATC	4 cut(s)	3, 366, 418, 547
BssT1I	CCWWGG	1 cut(s)	280
Bst2UI	CCWGG	1 cut(s)	336
Bst4CI	ACNGT	4 cut(s)	64, 295, 426, 513
BstC8I	GCNNGC	2 cut(s)	221, 525
BstDEI	CTNAG	3 cut(s)	313, 327, 602
BstF5I	GGATG	2 cut(s)	43, 123
BstH2I	RGCGCY	1 cut(s)	558
BstHHI	GCGC	3 cut(s)	76, 158, 557
BstKTI	GATC	4 cut(s)	6, 369, 421, 550
BstMBI	GATC	4 cut(s)	3, 366, 418, 547
BstMWI	GCNNNNNNNGC	2 cut(s)	203, 338
BstNI	CCWGG	1 cut(s)	336
BstSCI	CCNGG	1 cut(s)	334
BstSFI	CTRYAG	1 cut(s)	566
BstV1I	GCAGC	1 cut(s)	613
BstX2I	RGATCY	1 cut(s)	547
BstYI	RGATCY	1 cut(s)	547
BsuRI	GGCC	1 cut(s)	332
BtgZI	GCGATG	1 cut(s)	416
BtsCI	GGATG	2 cut(s)	43, 123
BtsI	GCAGTG	1 cut(s)	534
BtsIMutI	CAGTG	1 cut(s)	534
Cac8I	GCNNGC	2 cut(s)	221, 525
CaiI	CAGNNNCTG	2 cut(s)	82, 626
CciI	TCATGA	2 cut(s)	297, 577
CfoI	GCGC	3 cut(s)	76, 158, 557
Cfr13I	GGNCC	1 cut(s)	331
Csp6I	GTAC	6 cut(s)	10, 25, 138, 324, 509, 514
CviAII	CATG	4 cut(s)	298, 385, 578, 650
CviQI	GTAC	6 cut(s)	10, 25, 138, 324, 509, 514
DdeI	CTNAG	3 cut(s)	313, 327, 602
DpnI	GATC	4 cut(s)	5, 368, 420, 549
DpnII	GATC	4 cut(s)	3, 366, 418, 547
DraI	TTTAAA	1 cut(s)	501
DraIII	CACNNNGTG	1 cut(s)	215
DriI	GACNNNNNGTC	2 cut(s)	66, 263
Eam1105I	GACNNNNNGTC	2 cut(s)	66, 263
Eco130I	CCWWGG	1 cut(s)	280
Eco24I	GRGCYC	1 cut(s)	392
Eco57I	CTGAAG	1 cut(s)	576
EcoO109I	RGGNCCY	1 cut(s)	331
EcoRII	CCWGG	1 cut(s)	334
EcoT14I	CCWWGG	1 cut(s)	280
EcoT38I	GRGCYC	1 cut(s)	392
ErhI	CCWWGG	1 cut(s)	280
FaeI	CATG	4 cut(s)	301, 388, 581, 653
FaiI	YATR	6 cut(s)	299, 345, 386, 579, 651, 666
FaqI	GGGAC	1 cut(s)	183
FatI	CATG	4 cut(s)	297, 384, 577, 649
FbaI	TGATCA	2 cut(s)	3, 418
Fnu4HI	GCNGC	1 cut(s)	627
FokI	GGATG	2 cut(s)	50, 130
FriOI	GRGCYC	1 cut(s)	392
Fsp4HI	GCNGC	1 cut(s)	627
FspBI	CTAG	1 cut(s)	608
GlaI	GCGC	3 cut(s)	75, 157, 556
GluI	GCNGC	1 cut(s)	627
HaeII	RGCGCY	1 cut(s)	558
HaeIII	GGCC	1 cut(s)	332
HhaI	GCGC	3 cut(s)	76, 158, 557
Hin1II	CATG	4 cut(s)	301, 388, 581, 653
Hin6I	GCGC	3 cut(s)	74, 156, 555
HinP1I	GCGC	3 cut(s)	74, 156, 555
HinfI	GANTC	4 cut(s)	67, 79, 85, 349
HphI	GGTGA	1 cut(s)	70
Hpy166II	GTNNAC	2 cut(s)	187, 516
Hpy188I	TCNGA	2 cut(s)	84, 354
Hpy188III	TCNNGA	4 cut(s)	255, 298, 395, 578
Hpy8I	GTNNAC	2 cut(s)	187, 516
HpyAV	CCTTC	1 cut(s)	632
HpyCH4III	ACNGT	4 cut(s)	64, 295, 426, 513
HpyCH4V	TGCA	5 cut(s)	458, 476, 482, 523, 568
HpyF10VI	GCNNNNNNNGC	2 cut(s)	203, 338
HpyF3I	CTNAG	3 cut(s)	313, 327, 602
Hsp92II	CATG	4 cut(s)	301, 388, 581, 653
HspAI	GCGC	3 cut(s)	74, 156, 555
Ksp22I	TGATCA	2 cut(s)	3, 418
Kzo9I	GATC	4 cut(s)	3, 366, 418, 547
LmnI	GCTCC	3 cut(s)	134, 306, 623
Lsp1109I	GCAGC	1 cut(s)	613
MaeI	CTAG	1 cut(s)	608
MaeIII	GTNAC	1 cut(s)	58
MalI	GATC	4 cut(s)	5, 368, 420, 549
MboI	GATC	4 cut(s)	3, 366, 418, 547
MboII	GAAGA	2 cut(s)	552, 682
MflI	RGATCY	1 cut(s)	547
MhlI	GDGCHC	1 cut(s)	392
MluCI	AATT	3 cut(s)	31, 243, 250
MlyI	GAGTC	1 cut(s)	76
MnlI	CCTC	8 cut(s)	102, 142, 159, 208, 322, 374, 593, 604
MseI	TTAA	4 cut(s)	15, 275, 500, 587
MspR9I	CCNGG	1 cut(s)	336
MvaI	CCWGG	1 cut(s)	336
MwoI	GCNNNNNNNGC	2 cut(s)	203, 338
NdeII	GATC	4 cut(s)	3, 366, 418, 547
NlaIII	CATG	4 cut(s)	301, 388, 581, 653
NlaIV	GGNNCC	2 cut(s)	130, 333
NmeAIII	GCCGAG	1 cut(s)	531
NmuCI	GTSAC	1 cut(s)	58
PagI	TCATGA	2 cut(s)	297, 577
PasI	CCCWGGG	1 cut(s)	335
PfeI	GAWTC	3 cut(s)	79, 85, 349
PkrI	GCNGC	1 cut(s)	628
PleI	GAGTC	1 cut(s)	75
PpsI	GAGTC	1 cut(s)	75
Psp6I	CCWGG	1 cut(s)	334
PspGI	CCWGG	1 cut(s)	334
PspN4I	GGNNCC	2 cut(s)	130, 333
PspPI	GGNCC	1 cut(s)	331
PstI	CTGCAG	1 cut(s)	570
PstNI	CAGNNNCTG	2 cut(s)	82, 626
PsuI	RGATCY	1 cut(s)	547
RsaI	GTAC	6 cut(s)	11, 26, 139, 325, 510, 515
RsaNI	GTAC	6 cut(s)	10, 25, 138, 324, 509, 514
SaqAI	TTAA	4 cut(s)	15, 275, 500, 587
SatI	GCNGC	1 cut(s)	627
Sau3AI	GATC	4 cut(s)	3, 366, 418, 547
Sau96I	GGNCC	1 cut(s)	331
ScaI	AGTACT	1 cut(s)	325
SchI	GAGTC	1 cut(s)	76
ScrFI	CCNGG	1 cut(s)	336
SduI	GDGCHC	1 cut(s)	392
SfcI	CTRYAG	1 cut(s)	566
SmlI	CTYRAG	1 cut(s)	630
SmoI	CTYRAG	1 cut(s)	630
Sse9I	AATT	3 cut(s)	31, 243, 250
SsiI	CCGC	1 cut(s)	182
SspMI	CTAG	1 cut(s)	608
StyD4I	CCNGG	1 cut(s)	334
StyI	CCWWGG	1 cut(s)	280
TaaI	ACNGT	4 cut(s)	64, 295, 426, 513
TaqI	TCGA	1 cut(s)	29
TasI	AATT	3 cut(s)	31, 243, 250
TatI	WGTACW	4 cut(s)	9, 24, 137, 323
TfiI	GAWTC	3 cut(s)	79, 85, 349
Tru1I	TTAA	4 cut(s)	15, 275, 500, 587
Tru9I	TTAA	4 cut(s)	15, 275, 500, 587
TscAI	CASTG	1 cut(s)	534
TseFI	GTSAC	1 cut(s)	58
TseI	GCWGC	1 cut(s)	626
Tsp45I	GTSAC	1 cut(s)	58
TspDTI	ATGAA	1 cut(s)	638
TspRI	CASTG	1 cut(s)	534
XapI	RAATTY	2 cut(s)	31, 243
XspI	CTAG	1 cut(s)	608
ZrmI	AGTACT	1 cut(s)	325

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.