Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8005014.1

Orthogroup ID

OG0000729

Physical Location & Seq

Genomic Coordinates Reverse (-)

2 .. 491

Gene Structure 490 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8005014.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 490 bp

atggtcagatccgtcaaggcccgccgcgtccccctcctctccaaccccgtcttcaagtcccccgaggaccgcatccacaacgacgacgttttcgaccacggtgccaatccctacgtcctagtcaccgagtccggcgcccccagctccaagcttttgggctacgtggcgagccgcgattgggtggagctggcggacaaggaggtcaagatttacgattacatggtcagctgcaaggacatggttttgccgtggagctccgatttggggaggattgaggagttcatggcggagaaaggccgtgacgtggcggcgacggtgaggggcgacgaggttgtggacgttgtggggaaggaggacgtggagcggatcagagggtacccgaagttgggggtcgggtcggttgggccggacgggtcgtggagggtcggggcggcgatagggacgagggagtcggataaggagagattggaggagttggtgaaggctggga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0003938 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006139 GO:0006163 GO:0006164 GO:0006183 GO:0006725 GO:0006753 GO:0006793 GO:0006796 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009116 GO:0009117 GO:0009119 GO:0009141 GO:0009142 GO:0009144 GO:0009145 GO:0009150 GO:0009152 GO:0009163 GO:0009165 GO:0009199 GO:0009201 GO:0009205 GO:0009206 GO:0009259 GO:0009260 GO:0009719 GO:0009725 GO:0009735 GO:0009987 GO:0010033 GO:0016491 GO:0016614 GO:0016616 GO:0018130 GO:0019438 GO:0019637 GO:0019693 GO:0034404 GO:0034641 GO:0034654 GO:0042221 GO:0042278 GO:0042451 GO:0042455 GO:0044237 GO:0044238 GO:0044249 GO:0044271 GO:0044281 GO:0044283 GO:0044424 GO:0044444 GO:0044464 GO:0046039 GO:0046128 GO:0046129 GO:0046390 GO:0046483 GO:0050896 GO:0055086 GO:0055114 GO:0071704 GO:0072521 GO:0072522 GO:0090407 GO:1901068 GO:1901070 GO:1901135 GO:1901137 GO:1901293 GO:1901360 GO:1901362 GO:1901564 GO:1901566 GO:1901576 GO:1901657 GO:1901659

KEGG Pathways

Metabolic & Signaling

ko00230 ko00983 ko01100 ko01110 map00230 map00983 map01100 map01110

Pfam Domains

Protein Families

IMPDH

Protein Analysis

163

Amino Acids

17.99

Weight (kDa)

5.18

Isoelectric Point (pI)

36.67

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000729)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G16350 AT1G79470
fragaria_vesca	FvH4_3g14430 FvH4_3g14430
malus_domestica	MD05G1237000.v1.1 MD05G1237500.v1.1 MD10G1213800.v1.1
prunus_persica	Prupe.4G129200_v2.0.a1 Prupe.4G129200_v2.0.a1
pyrus_communis	pycom05g21380 pycom10g18050 pycom10g18080 pycom10g18140 pycom10g18190
rosa_chinensis	RchiOBHm_Chr1g0350061 RchiOBHm_Chr2g0101951 RchiOBHm_Chr2g0155871 RchiOBHm_Chr3g0468611 RchiOBHm_Chr3g0493461 RchiOBHm_Chr4g0401281 RchiOBHm_Chr4g0402021 RchiOBHm_Chr5g0023561 RchiOBHm_Chr5g0023571 RchiOBHm_Chr5g0023741 RchiOBHm_Chr7g0231801 RchiOBHm_Chr7g0234111 RchiOBHm_Chr7g0238791 RchiOBHm_Chr7g0239601
rosa_laevigata	RLG00000032733
rosa_multiflora	Rmu_co8005014.1_g000001 Rmu_co8223904.1_g000001 Rmu_sc0000087.1_g000007 Rmu_sc0000110.1_g000028 Rmu_sc0000172.1_g000003 Rmu_sc0000689.1_g000019 Rmu_sc0000870.1_g000014 Rmu_sc0001372.1_g000011 Rmu_sc0001516.1_g000086 Rmu_sc0001653.1_g000008 Rmu_sc0002862.1_g000001 Rmu_sc0002862.1_g000002 Rmu_sc0008652.1_g000002 Rmu_sc0011789.1_g000002 Rmu_sc0013252.1_g000001 Rmu_sc0017256.1_g000001 Rmu_sc0017907.1_g000002 Rmu_sc0017907.1_g000003 Rmu_sc0018737.1_g000003 Rmu_sc0020536.1_g000001 Rmu_sc0025127.1_g000001 Rmu_sc0028608.1_g000001 Rmu_sc0029703.1_g000001 Rmu_ssc0000027.1_g000015
rosa_roxburghii	Rroxscaffold_1G00055450
rosa_rugosa	Rorug03G0326300 Rorug05G0079400 Rorug05G0352300
rosa_samantha	Rh5AG167200 Rh5AG169300 Rh5BG166700 Rh5CG181100 Rh5CG182300 Rh5DG168600 Rh6BG409700
rosa_wichuraiana	Rw0G001580 Rw0G004990 Rw1G017410 Rw2G027840 Rw4G002740 Rw5G015190 Rw5G015310 Rw7G033830

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	2 cut(s)	200, 448
Acc65I	GGTACC	1 cut(s)	375
AccB1I	GGYRCC	3 cut(s)	101, 134, 375
AccBSI	CCGCTC	1 cut(s)	364
AccII	CGCG	2 cut(s)	27, 174
AciI	CCGC	9 cut(s)	22, 25, 70, 172, 191, 287, 308, 364, 431
AclWI	GGATC	2 cut(s)	3, 374
AcyI	GRCGYC	1 cut(s)	135
AfaI	GTAC	1 cut(s)	377
AfiI	CCNNNNNNNGG	5 cut(s)	178, 264, 304, 385, 386
AgsI	TTSAA	1 cut(s)	55
AjiI	CACGTC	2 cut(s)	304, 358
AjuI	GAANNNNNNNTTGG	2 cut(s)	35, 67
AluBI	AGCT	5 cut(s)	144, 151, 187, 228, 255
AluI	AGCT	5 cut(s)	144, 151, 187, 228, 255
Alw21I	GWGCWC	1 cut(s)	257
AlwI	GGATC	2 cut(s)	3, 374
Ama87I	CYCGRG	1 cut(s)	62
AoxI	GGCC	3 cut(s)	18, 295, 404
ApeKI	GCWGC	1 cut(s)	228
ArsI	GACNNNNNNTTYG	2 cut(s)	74, 106
Asp718I	GGTACC	1 cut(s)	375
AspLEI	GCGC	1 cut(s)	137
AspS9I	GGNCC	3 cut(s)	19, 67, 404
AsuHPI	GGTGA	3 cut(s)	115, 328, 490
AvaI	CYCGRG	1 cut(s)	62
AvaII	GGWCC	1 cut(s)	67
BanI	GGYRCC	3 cut(s)	101, 134, 375
BanII	GRGCYC	1 cut(s)	257
BbsI	GAAGAC	1 cut(s)	43
Bbv12I	GWGCWC	1 cut(s)	257
BbvI	GCAGC	1 cut(s)	215
BceAI	ACGGC	2 cut(s)	232, 282
BcgI	CGANNNNNNTGC	2 cut(s)	83, 117
BfaI	CTAG	1 cut(s)	119
BfoI	RGCGCY	1 cut(s)	138
BisI	GCNGC	5 cut(s)	25, 172, 229, 309, 432
BlsI	GCNGC	5 cut(s)	26, 173, 230, 310, 433
Bme18I	GGWCC	1 cut(s)	67
BmeT110I	CYCGRG	1 cut(s)	62
BmgBI	CACGTC	2 cut(s)	304, 358
BmgT120I	GGNCC	3 cut(s)	19, 67, 404
BmiI	GGNNCC	3 cut(s)	103, 136, 377
BmsI	GCATC	1 cut(s)	81
BpiI	GAAGAC	1 cut(s)	43
BsaAI	YACGTR	1 cut(s)	163
BsaHI	GRCGYC	1 cut(s)	135
BsaJI	CCNNGG	3 cut(s)	63, 97, 248
Bsc4I	CCNNNNNNNGG	5 cut(s)	178, 264, 304, 385, 386
BseDI	CCNNGG	3 cut(s)	63, 97, 248
BseGI	GGATG	1 cut(s)	72
BseLI	CCNNNNNNNGG	5 cut(s)	178, 264, 304, 385, 386
BseRI	GAGGAG	3 cut(s)	26, 290, 485
BseXI	GCAGC	1 cut(s)	215
BseYI	CCCAGC	2 cut(s)	140, 485
Bsh1236I	CGCG	2 cut(s)	27, 174
BshFI	GGCC	3 cut(s)	20, 297, 406
BshNI	GGYRCC	3 cut(s)	101, 134, 375
BsiHKAI	GWGCWC	1 cut(s)	257
BsiHKCI	CYCGRG	1 cut(s)	62
BsiSI	CCGG	2 cut(s)	132, 407
BslFI	GGGAC	3 cut(s)	14, 43, 454
BslI	CCNNNNNNNGG	5 cut(s)	178, 264, 304, 385, 386
BsmFI	GGGAC	3 cut(s)	14, 43, 454
BsnI	GGCC	3 cut(s)	20, 297, 406
BsoBI	CYCGRG	1 cut(s)	62
Bsp1286I	GDGCHC	1 cut(s)	257
Bsp143I	GATC	2 cut(s)	8, 366
BspACI	CCGC	9 cut(s)	22, 25, 70, 172, 191, 287, 308, 364, 431
BspANI	GGCC	3 cut(s)	20, 297, 406
BspFNI	CGCG	2 cut(s)	27, 174
BspLI	GGNNCC	3 cut(s)	103, 136, 377
BspPI	GGATC	2 cut(s)	3, 374
BspT107I	GGYRCC	3 cut(s)	101, 134, 375
BsrBI	CCGCTC	1 cut(s)	364
BssECI	CCNNGG	3 cut(s)	63, 97, 248
BssMI	GATC	2 cut(s)	8, 366
BssNI	GRCGYC	1 cut(s)	135
Bst4CI	ACNGT	2 cut(s)	101, 316
BstACI	GRCGYC	1 cut(s)	135
BstBAI	YACGTR	1 cut(s)	163
BstC8I	GCNNGC	3 cut(s)	22, 169, 189
BstDSI	CCRYGG	2 cut(s)	97, 248
BstF5I	GGATG	1 cut(s)	72
BstFNI	CGCG	2 cut(s)	27, 174
BstH2I	RGCGCY	1 cut(s)	138
BstHHI	GCGC	1 cut(s)	137
BstKTI	GATC	2 cut(s)	11, 369
BstMBI	GATC	2 cut(s)	8, 366
BstMWI	GCNNNNNNNGC	1 cut(s)	141
BstUI	CGCG	2 cut(s)	27, 174
BstV1I	GCAGC	1 cut(s)	215
BstV2I	GAAGAC	1 cut(s)	43
BstX2I	RGATCY	1 cut(s)	8
BstXI	CCANNNNNNTGG	1 cut(s)	154
BstYI	RGATCY	1 cut(s)	8
BsuRI	GGCC	3 cut(s)	20, 297, 406
BtgI	CCRYGG	2 cut(s)	97, 248
BtrI	CACGTC	2 cut(s)	304, 358
BtsCI	GGATG	1 cut(s)	72
Cac8I	GCNNGC	3 cut(s)	22, 169, 189
CfoI	GCGC	1 cut(s)	137
Cfr13I	GGNCC	3 cut(s)	19, 67, 404
CseI	GACGC	1 cut(s)	16
Csp6I	GTAC	1 cut(s)	376
CviAII	CATG	3 cut(s)	220, 238, 283
CviQI	GTAC	1 cut(s)	376
DinI	GGCGCC	1 cut(s)	136
DpnI	GATC	2 cut(s)	10, 368
DpnII	GATC	2 cut(s)	8, 366
DrdI	GACNNNNNNGTC	2 cut(s)	200, 448
DseDI	GACNNNNNNGTC	2 cut(s)	200, 448
EciI	GGCGGA	2 cut(s)	206, 302
Ecl136II	GAGCTC	1 cut(s)	255
Eco24I	GRGCYC	1 cut(s)	257
Eco47I	GGWCC	1 cut(s)	67
Eco53kI	GAGCTC	1 cut(s)	255
Eco88I	CYCGRG	1 cut(s)	62
EcoICRI	GAGCTC	1 cut(s)	255
EcoT38I	GRGCYC	1 cut(s)	257
EgeI	GGCGCC	1 cut(s)	136
EheI	GGCGCC	1 cut(s)	136
FaeI	CATG	3 cut(s)	223, 241, 286
FaiI	YATR	3 cut(s)	221, 239, 284
FaqI	GGGAC	3 cut(s)	14, 43, 454
FatI	CATG	3 cut(s)	219, 237, 282
FauI	CCCGC	1 cut(s)	29
Fnu4HI	GCNGC	5 cut(s)	25, 172, 229, 309, 432
FokI	GGATG	1 cut(s)	59
FriOI	GRGCYC	1 cut(s)	257
Fsp4HI	GCNGC	5 cut(s)	25, 172, 229, 309, 432
FspBI	CTAG	1 cut(s)	119
GlaI	GCGC	1 cut(s)	136
GluI	GCNGC	5 cut(s)	25, 172, 229, 309, 432
GsaI	CCCAGC	2 cut(s)	144, 489
HaeII	RGCGCY	1 cut(s)	138
HaeIII	GGCC	3 cut(s)	20, 297, 406
HapII	CCGG	2 cut(s)	132, 407
HgaI	GACGC	1 cut(s)	16
HhaI	GCGC	1 cut(s)	137
Hin1I	GRCGYC	1 cut(s)	135
Hin1II	CATG	3 cut(s)	223, 241, 286
Hin6I	GCGC	1 cut(s)	135
HinP1I	GCGC	1 cut(s)	135
HindIII	AAGCTT	1 cut(s)	149
HinfI	GANTC	2 cut(s)	128, 449
HpaII	CCGG	2 cut(s)	132, 407
HphI	GGTGA	3 cut(s)	115, 328, 490
Hpy166II	GTNNAC	1 cut(s)	337
Hpy188I	TCNGA	4 cut(s)	8, 259, 371, 454
Hpy188III	TCNNGA	1 cut(s)	205
Hpy8I	GTNNAC	1 cut(s)	337
Hpy99I	CGWCG	4 cut(s)	86, 89, 316, 329
HpyAV	CCTTC	2 cut(s)	343, 475
HpyCH4III	ACNGT	2 cut(s)	101, 316
HpyCH4IV	ACGT	6 cut(s)	87, 114, 162, 303, 339, 357
HpyCH4V	TGCA	1 cut(s)	231
HpyF10VI	GCNNNNNNNGC	1 cut(s)	141
HpySE526I	ACGT	6 cut(s)	87, 114, 162, 303, 339, 357
Hsp92I	GRCGYC	1 cut(s)	135
Hsp92II	CATG	3 cut(s)	223, 241, 286
HspAI	GCGC	1 cut(s)	135
KasI	GGCGCC	1 cut(s)	134
KpnI	GGTACC	1 cut(s)	379
Kzo9I	GATC	2 cut(s)	8, 366
LmnI	GCTCC	5 cut(s)	149, 184, 252, 260, 361
LpnPI	CCDG	5 cut(s)	145, 154, 173, 420, 471
Lsp1109I	GCAGC	1 cut(s)	215
LweI	GCATC	1 cut(s)	81
MaeI	CTAG	1 cut(s)	119
MaeII	ACGT	6 cut(s)	87, 114, 162, 303, 339, 357
MaeIII	GTNAC	2 cut(s)	121, 299
MalI	GATC	2 cut(s)	10, 368
MbiI	CCGCTC	1 cut(s)	364
MboI	GATC	2 cut(s)	8, 366
MboII	GAAGA	1 cut(s)	43
MflI	RGATCY	1 cut(s)	8
MhlI	GDGCHC	1 cut(s)	257
Mly113I	GGCGCC	1 cut(s)	135
MlyI	GAGTC	2 cut(s)	137, 458
MmeI	TCCRAC	2 cut(s)	66, 432
MspA1I	CMGCKG	1 cut(s)	228
MspI	CCGG	2 cut(s)	132, 407
MvnI	CGCG	2 cut(s)	27, 174
MwoI	GCNNNNNNNGC	1 cut(s)	141
NarI	GGCGCC	1 cut(s)	135
NdeII	GATC	2 cut(s)	8, 366
NlaIII	CATG	3 cut(s)	223, 241, 286
NlaIV	GGNNCC	3 cut(s)	103, 136, 377
NmuCI	GTSAC	2 cut(s)	121, 299
PcsI	WCGNNNNNNNCGW	1 cut(s)	90
PkrI	GCNGC	5 cut(s)	26, 173, 230, 310, 433
PleI	GAGTC	2 cut(s)	136, 457
PluTI	GGCGCC	1 cut(s)	138
PpsI	GAGTC	2 cut(s)	136, 457
Ppu21I	YACGTR	1 cut(s)	163
Psp124BI	GAGCTC	1 cut(s)	257
PspFI	CCCAGC	2 cut(s)	140, 485
PspN4I	GGNNCC	3 cut(s)	103, 136, 377
PspPI	GGNCC	3 cut(s)	19, 67, 404
PsuI	RGATCY	1 cut(s)	8
PvuII	CAGCTG	1 cut(s)	228
RsaI	GTAC	1 cut(s)	377
RsaNI	GTAC	1 cut(s)	376
SacI	GAGCTC	1 cut(s)	257
SatI	GCNGC	5 cut(s)	25, 172, 229, 309, 432
Sau3AI	GATC	2 cut(s)	8, 366
Sau96I	GGNCC	3 cut(s)	19, 67, 404
SchI	GAGTC	2 cut(s)	137, 458
SduI	GDGCHC	1 cut(s)	257
SfaNI	GCATC	1 cut(s)	81
SfoI	GGCGCC	1 cut(s)	136
SinI	GGWCC	1 cut(s)	67
SsiI	CCGC	9 cut(s)	22, 25, 70, 172, 191, 287, 308, 364, 431
SspDI	GGCGCC	1 cut(s)	134
SspMI	CTAG	1 cut(s)	119
SstI	GAGCTC	1 cut(s)	257
TaaI	ACNGT	2 cut(s)	101, 316
TaiI	ACGT	6 cut(s)	90, 117, 165, 306, 342, 360
TaqI	TCGA	1 cut(s)	93
TauI	GCSGC	4 cut(s)	27, 174, 311, 434
TseFI	GTSAC	2 cut(s)	121, 299
TseI	GCWGC	1 cut(s)	228
Tsp45I	GTSAC	2 cut(s)	121, 299
TspDTI	ATGAA	1 cut(s)	271
VpaK11BI	GGWCC	1 cut(s)	67
XspI	CTAG	1 cut(s)	119

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.