Rmu_sc0017907.1_g000003

Catalyzes the conversion of inosine 5'-phosphate (IMP) to xanthosine 5'-phosphate (XMP), the first committed and rate- limiting step in the de novo synthesis of guanine nucleotides, and therefore plays an important role in the regulation of cell growth

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0017907.1
Physical Location & Seq
Reverse (-)
3796 .. 4161
366 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0017907.1_g000003.1.cds

Sequence Viewer

Length: 366 bp
atggcgagccgcgattgggtgaagctggcgaacaaggaggtcaagatttacgattacatggtcagctgtaaggacatggttttgccttggagctccgatttggggaagattgaggagttcatggcggagaaaggccgtgaagtggcggcgatggtgagggacgacgaggttgtcgacattgtggggaaggaggacgtggagcggaacaaggggtacccaaagttgggggtcgggtcgtggaaggtcggggcggcgatagggacgagggagtcggataaggagagattggaggagttggtgaaggctgggattgatgtggtggttttggatagctcacagggaactccatttatcagattgagatga

Protein Analysis

121

Amino Acids

13.58

Weight (kDa)

5.12

Isoelectric Point (pI)

34.9

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000729)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G16350 AT1G79470
fragaria_vesca FvH4_3g14430 FvH4_3g14430
malus_domestica MD05G1237000.v1.1 MD05G1237500.v1.1 MD10G1213800.v1.1
prunus_persica Prupe.4G129200_v2.0.a1 Prupe.4G129200_v2.0.a1
pyrus_communis pycom05g21380 pycom10g18050 pycom10g18080 pycom10g18140 pycom10g18190
rosa_chinensis RchiOBHm_Chr1g0350061 RchiOBHm_Chr2g0101951 RchiOBHm_Chr2g0155871 RchiOBHm_Chr3g0468611 RchiOBHm_Chr3g0493461 RchiOBHm_Chr4g0401281 RchiOBHm_Chr4g0402021 RchiOBHm_Chr5g0023561 RchiOBHm_Chr5g0023571 RchiOBHm_Chr5g0023741 RchiOBHm_Chr7g0231801 RchiOBHm_Chr7g0234111 RchiOBHm_Chr7g0238791 RchiOBHm_Chr7g0239601
rosa_laevigata RLG00000032733
rosa_multiflora Rmu_co8005014.1_g000001 Rmu_co8223904.1_g000001 Rmu_sc0000087.1_g000007 Rmu_sc0000110.1_g000028 Rmu_sc0000172.1_g000003 Rmu_sc0000689.1_g000019 Rmu_sc0000870.1_g000014 Rmu_sc0001372.1_g000011 Rmu_sc0001516.1_g000086 Rmu_sc0001653.1_g000008 Rmu_sc0002862.1_g000001 Rmu_sc0002862.1_g000002 Rmu_sc0008652.1_g000002 Rmu_sc0011789.1_g000002 Rmu_sc0013252.1_g000001 Rmu_sc0017256.1_g000001 Rmu_sc0017907.1_g000002 Rmu_sc0017907.1_g000003 Rmu_sc0018737.1_g000003 Rmu_sc0020536.1_g000001 Rmu_sc0025127.1_g000001 Rmu_sc0028608.1_g000001 Rmu_sc0029703.1_g000001 Rmu_ssc0000027.1_g000015
rosa_roxburghii Rroxscaffold_1G00055450
rosa_rugosa Rorug03G0326300 Rorug05G0079400 Rorug05G0352300
rosa_samantha Rh5AG167200 Rh5AG169300 Rh5BG166700 Rh5CG181100 Rh5CG182300 Rh5DG168600 Rh6BG409700
rosa_wichuraiana Rw0G001580 Rw0G004990 Rw1G017410 Rw2G027840 Rw4G002740 Rw5G015190 Rw5G015310 Rw7G033830

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 2 cut(s) 170, 268
Acc65I GGTACC 1 cut(s) 213
AccB1I GGYRCC 1 cut(s) 213
AccBSI CCGCTC 1 cut(s) 202
AccI GTMKAC 1 cut(s) 174
AccII CGCG 1 cut(s) 12
AciI CCGC 5 cut(s) 10, 125, 146, 202, 251
AfaI GTAC 1 cut(s) 215
AfiI CCNNNNNNNGG 5 cut(s) 16, 102, 142, 223, 224
AjiI CACGTC 1 cut(s) 196
AluBI AGCT 4 cut(s) 25, 66, 93, 333
AluI AGCT 4 cut(s) 25, 66, 93, 333
Alw21I GWGCWC 1 cut(s) 95
AoxI GGCC 1 cut(s) 133
Asp718I GGTACC 1 cut(s) 213
AsuHPI GGTGA 3 cut(s) 31, 166, 310
BanI GGYRCC 1 cut(s) 213
BanII GRGCYC 1 cut(s) 95
Bbv12I GWGCWC 1 cut(s) 95
BccI CCATC 1 cut(s) 145
BceAI ACGGC 1 cut(s) 120
BisI GCNGC 3 cut(s) 10, 147, 252
BlsI GCNGC 3 cut(s) 11, 148, 253
BmgBI CACGTC 1 cut(s) 196
BmiI GGNNCC 1 cut(s) 215
BsaJI CCNNGG 1 cut(s) 86
Bsc4I CCNNNNNNNGG 5 cut(s) 16, 102, 142, 223, 224
BseDI CCNNGG 1 cut(s) 86
BseLI CCNNNNNNNGG 5 cut(s) 16, 102, 142, 223, 224
BseRI GAGGAG 2 cut(s) 128, 305
BseYI CCCAGC 1 cut(s) 305
Bsh1236I CGCG 1 cut(s) 12
BshFI GGCC 1 cut(s) 135
BshNI GGYRCC 1 cut(s) 213
BsiHKAI GWGCWC 1 cut(s) 95
BslFI GGGAC 2 cut(s) 173, 274
BslI CCNNNNNNNGG 5 cut(s) 16, 102, 142, 223, 224
BsmFI GGGAC 2 cut(s) 173, 274
BsnI GGCC 1 cut(s) 135
Bsp1286I GDGCHC 1 cut(s) 95
BspACI CCGC 5 cut(s) 10, 125, 146, 202, 251
BspANI GGCC 1 cut(s) 135
BspFNI CGCG 1 cut(s) 12
BspLI GGNNCC 1 cut(s) 215
BspT107I GGYRCC 1 cut(s) 213
BsrBI CCGCTC 1 cut(s) 202
BssECI CCNNGG 1 cut(s) 86
BssT1I CCWWGG 1 cut(s) 86
BstC8I GCNNGC 2 cut(s) 7, 27
BstFNI CGCG 1 cut(s) 12
BstUI CGCG 1 cut(s) 12
BsuRI GGCC 1 cut(s) 135
BtgZI GCGATG 1 cut(s) 164
BtrI CACGTC 1 cut(s) 196
Cac8I GCNNGC 2 cut(s) 7, 27
Csp6I GTAC 1 cut(s) 214
CviAII CATG 3 cut(s) 58, 76, 121
CviJI RGCY 7 cut(s) 9, 25, 66, 93, 135, 305, 333
CviKI_1 RGCY 7 cut(s) 9, 25, 66, 93, 135, 305, 333
CviQI GTAC 1 cut(s) 214
DrdI GACNNNNNNGTC 2 cut(s) 170, 268
DseDI GACNNNNNNGTC 2 cut(s) 170, 268
EciI GGCGGA 1 cut(s) 140
Ecl136II GAGCTC 1 cut(s) 93
Eco130I CCWWGG 1 cut(s) 86
Eco24I GRGCYC 1 cut(s) 95
Eco53kI GAGCTC 1 cut(s) 93
EcoICRI GAGCTC 1 cut(s) 93
EcoT14I CCWWGG 1 cut(s) 86
EcoT38I GRGCYC 1 cut(s) 95
ErhI CCWWGG 1 cut(s) 86
FaeI CATG 3 cut(s) 61, 79, 124
FaiI YATR 3 cut(s) 59, 77, 122
FaqI GGGAC 2 cut(s) 173, 274
FatI CATG 3 cut(s) 57, 75, 120
FblI GTMKAC 1 cut(s) 174
Fnu4HI GCNGC 3 cut(s) 10, 147, 252
FriOI GRGCYC 1 cut(s) 95
Fsp4HI GCNGC 3 cut(s) 10, 147, 252
GluI GCNGC 3 cut(s) 10, 147, 252
GsaI CCCAGC 1 cut(s) 309
HaeIII GGCC 1 cut(s) 135
Hin1II CATG 3 cut(s) 61, 79, 124
HincII GTYRAC 1 cut(s) 175
HindII GTYRAC 1 cut(s) 175
HinfI GANTC 1 cut(s) 269
HphI GGTGA 3 cut(s) 31, 166, 310
Hpy166II GTNNAC 1 cut(s) 175
Hpy188I TCNGA 3 cut(s) 97, 274, 356
Hpy188III TCNNGA 1 cut(s) 43
Hpy8I GTNNAC 1 cut(s) 175
Hpy99I CGWCG 1 cut(s) 167
HpyAV CCTTC 3 cut(s) 181, 235, 295
HpyCH4IV ACGT 1 cut(s) 195
HpySE526I ACGT 1 cut(s) 195
Hsp92II CATG 3 cut(s) 61, 79, 124
KpnI GGTACC 1 cut(s) 217
LmnI GCTCC 3 cut(s) 90, 98, 199
LpnPI CCDG 3 cut(s) 11, 291, 323
MaeII ACGT 1 cut(s) 195
MbiI CCGCTC 1 cut(s) 202
MboII GAAGA 1 cut(s) 118
MhlI GDGCHC 1 cut(s) 95
MlyI GAGTC 1 cut(s) 278
MmeI TCCRAC 1 cut(s) 252
MnlI CCTC 7 cut(s) 31, 106, 150, 160, 184, 258, 283
MspA1I CMGCKG 1 cut(s) 66
MvnI CGCG 1 cut(s) 12
NlaIII CATG 3 cut(s) 61, 79, 124
NlaIV GGNNCC 1 cut(s) 215
PcsI WCGNNNNNNNCGW 1 cut(s) 171
PkrI GCNGC 3 cut(s) 11, 148, 253
PleI GAGTC 1 cut(s) 277
PpsI GAGTC 1 cut(s) 277
Psp124BI GAGCTC 1 cut(s) 95
PspFI CCCAGC 1 cut(s) 305
PspN4I GGNNCC 1 cut(s) 215
PsrI GAACNNNNNNTAC 2 cut(s) 197, 229
PvuII CAGCTG 1 cut(s) 66
RsaI GTAC 1 cut(s) 215
RsaNI GTAC 1 cut(s) 214
SacI GAGCTC 1 cut(s) 95
SalI GTCGAC 1 cut(s) 173
SatI GCNGC 3 cut(s) 10, 147, 252
SchI GAGTC 1 cut(s) 278
SduI GDGCHC 1 cut(s) 95
SetI ASST 8 cut(s) 27, 42, 68, 95, 171, 198, 246, 335
SsiI CCGC 5 cut(s) 10, 125, 146, 202, 251
SstI GAGCTC 1 cut(s) 95
StyI CCWWGG 1 cut(s) 86
TaiI ACGT 1 cut(s) 198
TaqI TCGA 1 cut(s) 174
TauI GCSGC 3 cut(s) 12, 149, 254
TspDTI ATGAA 1 cut(s) 109
XmiI GTMKAC 1 cut(s) 174
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.