Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0000729

Physical Location & Seq

Genomic Coordinates Reverse (-)

58708587 .. 58709431

Gene Structure 845 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ20980

Sequence Viewer

CDS Protein Promoter (2k)

Length: 717 bp

ATGGCCGCCCTCGGCGGCATCGGCATCCTCCACTCCAACGCCGCCTCCTCCGACCAGGCCGCCATGGTCAGATCCGTCAAGGGCCGCCGCGTCCCCCTCCTTTCTGCCCCCGTCTTCATGTCCCGAGGAGACCACATCCACAACGACGACGTTTTCAACCACGGTGCCAATCCCTACGTCCTCGTCACCGAGTCCGGCGCCCCCAACTCCAAGCTTTTGGGCTACATGGCGAGCCGCGATTGGGTGAAGCTCGCGGTCAAGGAGGTCAAGATTTACGATTACATGGTCAGCTGTAAGGACATGGTTTTGCCTTGGAGCTCCGATTTGGGGAAGATTGAGGAGTTCATGGCGGAGAAAGGCCGTGACGTGGCGGCGATGGTGAGGGACGACGAGGTTGTCGACGTTGTGGGGAAGGAGGACGTGGAGCGGAACAAGGGGTACCCAAAGTTGGGGGTCGGGTCGTGGAAGGTCGGGGCGGCGATAGGGACGAGGGAGTCGGATAAGGAGAGATTGGAGGAGTTGATTGAGATGATCAAGTACATCAAGAAAATGTACTCAGATTTGGATGTGGTTGGTGGGAATGTGGTGACTGTGAGTCAGGCACAGAATTTGATTCAGGCTGGTGTTGATGGGTTGAGGGTTGGGATGGGGTCTGGCTCCATTTGTACTACTCAAGAGGTTTGTGCTGTCGGCAGGGGACAGATTATTAGTGGATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0003938 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006139 GO:0006163 GO:0006164 GO:0006183 GO:0006725 GO:0006753 GO:0006793 GO:0006796 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009116 GO:0009117 GO:0009119 GO:0009141 GO:0009142 GO:0009144 GO:0009145 GO:0009150 GO:0009152 GO:0009163 GO:0009165 GO:0009199 GO:0009201 GO:0009205 GO:0009206 GO:0009259 GO:0009260 GO:0009719 GO:0009725 GO:0009735 GO:0009987 GO:0010033 GO:0016491 GO:0016614 GO:0016616 GO:0018130 GO:0019438 GO:0019637 GO:0019693 GO:0034404 GO:0034641 GO:0034654 GO:0042221 GO:0042278 GO:0042451 GO:0042455 GO:0044237 GO:0044238 GO:0044249 GO:0044271 GO:0044281 GO:0044283 GO:0044424 GO:0044444 GO:0044464 GO:0046039 GO:0046128 GO:0046129 GO:0046390 GO:0046483 GO:0050896 GO:0055086 GO:0055114 GO:0071704 GO:0072521 GO:0072522 GO:0090407 GO:1901068 GO:1901070 GO:1901135 GO:1901137 GO:1901293 GO:1901360 GO:1901362 GO:1901564 GO:1901566 GO:1901576 GO:1901657 GO:1901659

KEGG Pathways

Metabolic & Signaling

ko00230 ko00983 ko01100 ko01110 map00230 map00983 map01100 map01110

Pfam Domains

Protein Families

IMPDH

Protein Analysis

238

Amino Acids

25.66

Weight (kDa)

5.86

Isoelectric Point (pI)

39.15

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
IMPDH	PF00478	1 - 176	7.1e-08	IMP dehydrogenase / GMP reductase domain
IMPDH	PF00478	173 - 235	8.9e-22	IMP dehydrogenase / GMP reductase domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000729)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G16350 AT1G79470
fragaria_vesca	FvH4_3g14430 FvH4_3g14430
malus_domestica	MD05G1237000.v1.1 MD05G1237500.v1.1 MD10G1213800.v1.1
prunus_persica	Prupe.4G129200_v2.0.a1 Prupe.4G129200_v2.0.a1
pyrus_communis	pycom05g21380 pycom10g18050 pycom10g18080 pycom10g18140 pycom10g18190
rosa_chinensis	RchiOBHm_Chr1g0350061 RchiOBHm_Chr2g0101951 RchiOBHm_Chr2g0155871 RchiOBHm_Chr3g0468611 RchiOBHm_Chr3g0493461 RchiOBHm_Chr4g0401281 RchiOBHm_Chr4g0402021 RchiOBHm_Chr5g0023561 RchiOBHm_Chr5g0023571 RchiOBHm_Chr5g0023741 RchiOBHm_Chr7g0231801 RchiOBHm_Chr7g0234111 RchiOBHm_Chr7g0238791 RchiOBHm_Chr7g0239601
rosa_laevigata	RLG00000032733
rosa_multiflora	Rmu_co8005014.1_g000001 Rmu_co8223904.1_g000001 Rmu_sc0000087.1_g000007 Rmu_sc0000110.1_g000028 Rmu_sc0000172.1_g000003 Rmu_sc0000689.1_g000019 Rmu_sc0000870.1_g000014 Rmu_sc0001372.1_g000011 Rmu_sc0001516.1_g000086 Rmu_sc0001653.1_g000008 Rmu_sc0002862.1_g000001 Rmu_sc0002862.1_g000002 Rmu_sc0008652.1_g000002 Rmu_sc0011789.1_g000002 Rmu_sc0013252.1_g000001 Rmu_sc0017256.1_g000001 Rmu_sc0017907.1_g000002 Rmu_sc0017907.1_g000003 Rmu_sc0018737.1_g000003 Rmu_sc0020536.1_g000001 Rmu_sc0025127.1_g000001 Rmu_sc0028608.1_g000001 Rmu_sc0029703.1_g000001 Rmu_ssc0000027.1_g000015
rosa_roxburghii	Rroxscaffold_1G00055450
rosa_rugosa	Rorug03G0326300 Rorug05G0079400 Rorug05G0352300
rosa_samantha	Rh5AG167200 Rh5AG169300 Rh5BG166700 Rh5CG181100 Rh5CG182300 Rh5DG168600 Rh6BG409700
rosa_wichuraiana	Rw0G001580 Rw0G004990 Rw1G017410 Rw2G027840 Rw4G002740 Rw5G015190 Rw5G015310 Rw7G033830

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	2 cut(s)	395, 493
Acc65I	GGTACC	1 cut(s)	438
AccB1I	GGYRCC	3 cut(s)	164, 197, 438
AccBSI	CCGCTC	1 cut(s)	427
AccI	GTMKAC	1 cut(s)	399
AccII	CGCG	3 cut(s)	90, 237, 254
AclWI	GGATC	1 cut(s)	66
AcoI	YGGCCR	1 cut(s)	3
AcsI	RAATTY	1 cut(s)	607
AcyI	GRCGYC	1 cut(s)	198
AfaI	GTAC	4 cut(s)	440, 539, 554, 667
AfiI	CCNNNNNNNGG	5 cut(s)	241, 327, 367, 448, 449
AgsI	TTSAA	1 cut(s)	157
AhdI	GACNNNNNGTC	1 cut(s)	594
AjiI	CACGTC	2 cut(s)	367, 421
AjnI	CCWGG	1 cut(s)	54
AluBI	AGCT	4 cut(s)	214, 250, 291, 318
AluI	AGCT	4 cut(s)	214, 250, 291, 318
Alw21I	GWGCWC	1 cut(s)	320
Alw26I	GTCTC	1 cut(s)	123
AlwI	GGATC	1 cut(s)	66
Ama87I	CYCGRG	1 cut(s)	123
AoxI	GGCC	4 cut(s)	3, 57, 82, 358
ApoI	RAATTY	1 cut(s)	607
Asp718I	GGTACC	1 cut(s)	438
AspLEI	GCGC	1 cut(s)	200
AspS9I	GGNCC	1 cut(s)	82
AsuHPI	GGTGA	4 cut(s)	178, 256, 391, 598
AvaI	CYCGRG	1 cut(s)	123
BanI	GGYRCC	3 cut(s)	164, 197, 438
BanII	GRGCYC	1 cut(s)	320
BbsI	GAAGAC	1 cut(s)	106
Bbv12I	GWGCWC	1 cut(s)	320
BccI	CCATC	3 cut(s)	370, 623, 640
BceAI	ACGGC	1 cut(s)	345
BciT130I	CCWGG	1 cut(s)	56
BclI	TGATCA	1 cut(s)	531
BcoDI	GTCTC	1 cut(s)	123
BfoI	RGCGCY	1 cut(s)	201
BisI	GCNGC	9 cut(s)	6, 16, 42, 60, 85, 88, 235, 372, 477
BlsI	GCNGC	9 cut(s)	7, 17, 43, 61, 86, 89, 236, 373, 478
Bme1390I	CCNGG	1 cut(s)	56
BmeRI	GACNNNNNGTC	1 cut(s)	594
BmeT110I	CYCGRG	1 cut(s)	123
BmgBI	CACGTC	2 cut(s)	367, 421
BmgT120I	GGNCC	1 cut(s)	82
BmiI	GGNNCC	4 cut(s)	166, 199, 440, 658
BmrFI	CCNGG	1 cut(s)	56
BmsI	GCATC	2 cut(s)	27, 33
BpiI	GAAGAC	1 cut(s)	106
BpuEI	CTTGAG	1 cut(s)	657
BsaHI	GRCGYC	1 cut(s)	198
BsaI	GGTCTC	1 cut(s)	123
BsaJI	CCNNGG	5 cut(s)	10, 63, 124, 160, 311
BsaXI	ACNNNNNCTCC	2 cut(s)	29, 59
Bsc4I	CCNNNNNNNGG	5 cut(s)	241, 327, 367, 448, 449
BseBI	CCWGG	1 cut(s)	56
BseDI	CCNNGG	5 cut(s)	10, 63, 124, 160, 311
BseGI	GGATG	4 cut(s)	24, 135, 571, 651
BseLI	CCNNNNNNNGG	5 cut(s)	241, 327, 367, 448, 449
BseMII	CTCAG	1 cut(s)	570
BseRI	GAGGAG	4 cut(s)	37, 141, 353, 530
Bsh1236I	CGCG	3 cut(s)	90, 237, 254
BshFI	GGCC	4 cut(s)	5, 59, 84, 360
BshNI	GGYRCC	3 cut(s)	164, 197, 438
BsiHKAI	GWGCWC	1 cut(s)	320
BsiHKCI	CYCGRG	1 cut(s)	123
BsiSI	CCGG	1 cut(s)	195
BslFI	GGGAC	5 cut(s)	77, 106, 398, 499, 711
BslI	CCNNNNNNNGG	5 cut(s)	241, 327, 367, 448, 449
BsmAI	GTCTC	1 cut(s)	123
BsmFI	GGGAC	5 cut(s)	77, 106, 398, 499, 711
BsnI	GGCC	4 cut(s)	5, 59, 84, 360
Bso31I	GGTCTC	1 cut(s)	123
BsoBI	CYCGRG	1 cut(s)	123
Bsp1286I	GDGCHC	1 cut(s)	320
Bsp143I	GATC	2 cut(s)	71, 531
Bsp19I	CCATGG	1 cut(s)	63
BspANI	GGCC	4 cut(s)	5, 59, 84, 360
BspCNI	CTCAG	1 cut(s)	569
BspFNI	CGCG	3 cut(s)	90, 237, 254
BspLI	GGNNCC	4 cut(s)	166, 199, 440, 658
BspPI	GGATC	1 cut(s)	66
BspT107I	GGYRCC	3 cut(s)	164, 197, 438
BspTNI	GGTCTC	1 cut(s)	123
BsrBI	CCGCTC	1 cut(s)	427
BssECI	CCNNGG	5 cut(s)	10, 63, 124, 160, 311
BssMI	GATC	2 cut(s)	71, 531
BssNI	GRCGYC	1 cut(s)	198
BssT1I	CCWWGG	2 cut(s)	63, 311
Bst2UI	CCWGG	1 cut(s)	56
Bst4CI	ACNGT	2 cut(s)	164, 592
BstACI	GRCGYC	1 cut(s)	198
BstC8I	GCNNGC	2 cut(s)	232, 252
BstDEI	CTNAG	1 cut(s)	556
BstDSI	CCRYGG	2 cut(s)	63, 160
BstF5I	GGATG	4 cut(s)	24, 135, 571, 651
BstFNI	CGCG	3 cut(s)	90, 237, 254
BstH2I	RGCGCY	1 cut(s)	201
BstHHI	GCGC	1 cut(s)	200
BstKTI	GATC	2 cut(s)	74, 534
BstMAI	GTCTC	1 cut(s)	123
BstMBI	GATC	2 cut(s)	71, 531
BstMWI	GCNNNNNNNGC	1 cut(s)	21
BstNI	CCWGG	1 cut(s)	56
BstSCI	CCNGG	1 cut(s)	54
BstUI	CGCG	3 cut(s)	90, 237, 254
BstV2I	GAAGAC	1 cut(s)	106
BstX2I	RGATCY	1 cut(s)	71
BstXI	CCANNNNNNTGG	1 cut(s)	217
BstYI	RGATCY	1 cut(s)	71
BsuRI	GGCC	4 cut(s)	5, 59, 84, 360
BtgI	CCRYGG	2 cut(s)	63, 160
BtgZI	GCGATG	1 cut(s)	389
BtrI	CACGTC	2 cut(s)	367, 421
BtsCI	GGATG	4 cut(s)	24, 135, 571, 651
Cac8I	GCNNGC	2 cut(s)	232, 252
CfoI	GCGC	1 cut(s)	200
Cfr13I	GGNCC	1 cut(s)	82
CseI	GACGC	1 cut(s)	79
Csp6I	GTAC	4 cut(s)	439, 538, 553, 666
CviAII	CATG	6 cut(s)	64, 118, 226, 283, 301, 346
CviQI	GTAC	4 cut(s)	439, 538, 553, 666
DdeI	CTNAG	1 cut(s)	556
DinI	GGCGCC	1 cut(s)	199
DpnI	GATC	2 cut(s)	73, 533
DpnII	GATC	2 cut(s)	71, 531
DrdI	GACNNNNNNGTC	2 cut(s)	395, 493
DriI	GACNNNNNGTC	1 cut(s)	594
DseDI	GACNNNNNNGTC	2 cut(s)	395, 493
EaeI	YGGCCR	1 cut(s)	3
Eam1105I	GACNNNNNGTC	1 cut(s)	594
EciI	GGCGGA	1 cut(s)	365
Ecl136II	GAGCTC	1 cut(s)	318
Eco130I	CCWWGG	2 cut(s)	63, 311
Eco24I	GRGCYC	1 cut(s)	320
Eco31I	GGTCTC	1 cut(s)	123
Eco53kI	GAGCTC	1 cut(s)	318
Eco88I	CYCGRG	1 cut(s)	123
EcoICRI	GAGCTC	1 cut(s)	318
EcoRII	CCWGG	1 cut(s)	54
EcoT14I	CCWWGG	2 cut(s)	63, 311
EcoT38I	GRGCYC	1 cut(s)	320
EgeI	GGCGCC	1 cut(s)	199
EheI	GGCGCC	1 cut(s)	199
ErhI	CCWWGG	2 cut(s)	63, 311
FaeI	CATG	6 cut(s)	67, 121, 229, 286, 304, 349
FaiI	YATR	6 cut(s)	65, 119, 227, 284, 302, 347
FaqI	GGGAC	5 cut(s)	77, 106, 398, 499, 711
FatI	CATG	6 cut(s)	63, 117, 225, 282, 300, 345
FbaI	TGATCA	1 cut(s)	531
FblI	GTMKAC	1 cut(s)	399
Fnu4HI	GCNGC	9 cut(s)	6, 16, 42, 60, 85, 88, 235, 372, 477
FokI	GGATG	4 cut(s)	11, 122, 578, 658
FriOI	GRGCYC	1 cut(s)	320
Fsp4HI	GCNGC	9 cut(s)	6, 16, 42, 60, 85, 88, 235, 372, 477
GlaI	GCGC	1 cut(s)	199
GluI	GCNGC	9 cut(s)	6, 16, 42, 60, 85, 88, 235, 372, 477
HaeII	RGCGCY	1 cut(s)	201
HaeIII	GGCC	4 cut(s)	5, 59, 84, 360
HapII	CCGG	1 cut(s)	195
HgaI	GACGC	1 cut(s)	79
HhaI	GCGC	1 cut(s)	200
Hin1I	GRCGYC	1 cut(s)	198
Hin1II	CATG	6 cut(s)	67, 121, 229, 286, 304, 349
Hin6I	GCGC	1 cut(s)	198
HinP1I	GCGC	1 cut(s)	198
HincII	GTYRAC	1 cut(s)	400
HindII	GTYRAC	1 cut(s)	400
HindIII	AAGCTT	1 cut(s)	212
HinfI	GANTC	4 cut(s)	191, 494, 595, 613
HpaII	CCGG	1 cut(s)	195
HphI	GGTGA	4 cut(s)	178, 256, 391, 598
Hpy166II	GTNNAC	1 cut(s)	400
Hpy188I	TCNGA	5 cut(s)	52, 71, 322, 499, 559
Hpy188III	TCNNGA	4 cut(s)	123, 268, 544, 674
Hpy8I	GTNNAC	1 cut(s)	400
Hpy99I	CGWCG	4 cut(s)	149, 152, 392, 404
HpyAV	CCTTC	2 cut(s)	406, 460
HpyCH4III	ACNGT	2 cut(s)	164, 592
HpyCH4IV	ACGT	5 cut(s)	150, 177, 366, 402, 420
HpyF10VI	GCNNNNNNNGC	1 cut(s)	21
HpyF3I	CTNAG	1 cut(s)	556
HpySE526I	ACGT	5 cut(s)	150, 177, 366, 402, 420
Hsp92I	GRCGYC	1 cut(s)	198
Hsp92II	CATG	6 cut(s)	67, 121, 229, 286, 304, 349
HspAI	GCGC	1 cut(s)	198
KasI	GGCGCC	1 cut(s)	197
KpnI	GGTACC	1 cut(s)	442
Ksp22I	TGATCA	1 cut(s)	531
Kzo9I	GATC	2 cut(s)	71, 531
LmnI	GCTCC	4 cut(s)	315, 323, 424, 662
LpnPI	CCDG	8 cut(s)	41, 68, 208, 584, 602, 606, 639, 679
LweI	GCATC	2 cut(s)	27, 33
MaeII	ACGT	5 cut(s)	150, 177, 366, 402, 420
MaeIII	GTNAC	3 cut(s)	184, 362, 586
MalI	GATC	2 cut(s)	73, 533
MbiI	CCGCTC	1 cut(s)	427
MboI	GATC	2 cut(s)	71, 531
MboII	GAAGA	2 cut(s)	106, 343
MflI	RGATCY	1 cut(s)	71
MhlI	GDGCHC	1 cut(s)	320
MluCI	AATT	1 cut(s)	607
Mly113I	GGCGCC	1 cut(s)	198
MlyI	GAGTC	3 cut(s)	200, 503, 604
MmeI	TCCRAC	3 cut(s)	60, 75, 477
MspA1I	CMGCKG	1 cut(s)	291
MspI	CCGG	1 cut(s)	195
MspR9I	CCNGG	1 cut(s)	56
MvaI	CCWGG	1 cut(s)	56
MvnI	CGCG	3 cut(s)	90, 237, 254
MwoI	GCNNNNNNNGC	1 cut(s)	21
NarI	GGCGCC	1 cut(s)	198
NcoI	CCATGG	1 cut(s)	63
NdeII	GATC	2 cut(s)	71, 531
NlaIII	CATG	6 cut(s)	67, 121, 229, 286, 304, 349
NlaIV	GGNNCC	4 cut(s)	166, 199, 440, 658
NmuCI	GTSAC	3 cut(s)	184, 362, 586
PcsI	WCGNNNNNNNCGW	1 cut(s)	396
PfeI	GAWTC	1 cut(s)	613
PkrI	GCNGC	9 cut(s)	7, 17, 43, 61, 86, 89, 236, 373, 478
PleI	GAGTC	3 cut(s)	199, 502, 603
PluTI	GGCGCC	1 cut(s)	201
PpsI	GAGTC	3 cut(s)	199, 502, 603
Psp124BI	GAGCTC	1 cut(s)	320
Psp6I	CCWGG	1 cut(s)	54
PspGI	CCWGG	1 cut(s)	54
PspN4I	GGNNCC	4 cut(s)	166, 199, 440, 658
PspPI	GGNCC	1 cut(s)	82
PsrI	GAACNNNNNNTAC	2 cut(s)	422, 454
PsuI	RGATCY	1 cut(s)	71
PvuII	CAGCTG	1 cut(s)	291
RsaI	GTAC	4 cut(s)	440, 539, 554, 667
RsaNI	GTAC	4 cut(s)	439, 538, 553, 666
SacI	GAGCTC	1 cut(s)	320
SalI	GTCGAC	1 cut(s)	398
SatI	GCNGC	9 cut(s)	6, 16, 42, 60, 85, 88, 235, 372, 477
Sau3AI	GATC	2 cut(s)	71, 531
Sau96I	GGNCC	1 cut(s)	82
SchI	GAGTC	3 cut(s)	200, 503, 604
ScrFI	CCNGG	1 cut(s)	56
SduI	GDGCHC	1 cut(s)	320
SfaNI	GCATC	2 cut(s)	27, 33
SfoI	GGCGCC	1 cut(s)	199
SmlI	CTYRAG	1 cut(s)	672
SmoI	CTYRAG	1 cut(s)	672
Sse9I	AATT	1 cut(s)	607
SspDI	GGCGCC	1 cut(s)	197
SstI	GAGCTC	1 cut(s)	320
StyD4I	CCNGG	1 cut(s)	54
StyI	CCWWGG	2 cut(s)	63, 311
TaaI	ACNGT	2 cut(s)	164, 592
TaiI	ACGT	5 cut(s)	153, 180, 369, 405, 423
TaqI	TCGA	1 cut(s)	399
TasI	AATT	1 cut(s)	607
TatI	WGTACW	3 cut(s)	537, 552, 665
TauI	GCSGC	9 cut(s)	8, 18, 44, 62, 87, 90, 237, 374, 479
TfiI	GAWTC	1 cut(s)	613
TseFI	GTSAC	3 cut(s)	184, 362, 586
Tsp45I	GTSAC	3 cut(s)	184, 362, 586
TspDTI	ATGAA	2 cut(s)	106, 334
TspGWI	ACGGA	1 cut(s)	64
XapI	RAATTY	1 cut(s)	607
XmiI	GTMKAC	1 cut(s)	399

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.