Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_ssc0000027.1

Orthogroup ID

OG0000729

Physical Location & Seq

Genomic Coordinates Forward (+)

71176 .. 74151

Gene Structure 2976 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_ssc0000027.1_g000015.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 567 bp

atggggtctggctccatttgtactactcaagaggtttgcgccgtcggcaggggacaggcaactgcggtttacaaggttgcatctgttgcttcacaaagtggtgtgcctgtcattgctgatgggggaatttccaattctggacacattgtcaaggctttaacccttggggcttctactgtcatgatggggagcttcttagctggaagtactgaggcccctggggcttataagaatcagaatggtcgccggatcaaaaaataccgaggcatgggctctcttgaagcgatgacaaaagggagtgatcaaaggtatctgggagatacagcgaagctgaagattgcacagggggtggttggtgcagttgcagacaaaggttctgttttaaagtttgtaccgtacacaatgcaagcagtgaaacaaggtttccaagatctcggcgcttcttctctgcagtctgctcatgacctcttaagatcaggggttttaaggctagaggtaagaacaggagctgctcaagtggaaggtggagttcatggattggtttcttacgagaagaagtcattttga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0003938 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006139 GO:0006163 GO:0006164 GO:0006183 GO:0006725 GO:0006753 GO:0006793 GO:0006796 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009116 GO:0009117 GO:0009119 GO:0009141 GO:0009142 GO:0009144 GO:0009145 GO:0009150 GO:0009152 GO:0009163 GO:0009165 GO:0009199 GO:0009201 GO:0009205 GO:0009206 GO:0009259 GO:0009260 GO:0009719 GO:0009725 GO:0009735 GO:0009987 GO:0010033 GO:0016491 GO:0016614 GO:0016616 GO:0018130 GO:0019438 GO:0019637 GO:0019693 GO:0034404 GO:0034641 GO:0034654 GO:0042221 GO:0042278 GO:0042451 GO:0042455 GO:0044237 GO:0044238 GO:0044249 GO:0044271 GO:0044281 GO:0044283 GO:0044424 GO:0044444 GO:0044464 GO:0046039 GO:0046128 GO:0046129 GO:0046390 GO:0046483 GO:0050896 GO:0055086 GO:0055114 GO:0071704 GO:0072521 GO:0072522 GO:0090407 GO:1901068 GO:1901070 GO:1901135 GO:1901137 GO:1901293 GO:1901360 GO:1901362 GO:1901564 GO:1901566 GO:1901576 GO:1901657 GO:1901659

KEGG Pathways

Metabolic & Signaling

ko00230 ko00983 ko01100 ko01110 map00230 map00983 map01100 map01110

Pfam Domains

Protein Families

IMPDH

Protein Analysis

188

Amino Acids

19.36

Weight (kDa)

9.7

Isoelectric Point (pI)

21.89

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000729)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G16350 AT1G79470
fragaria_vesca	FvH4_3g14430 FvH4_3g14430
malus_domestica	MD05G1237000.v1.1 MD05G1237500.v1.1 MD10G1213800.v1.1
prunus_persica	Prupe.4G129200_v2.0.a1 Prupe.4G129200_v2.0.a1
pyrus_communis	pycom05g21380 pycom10g18050 pycom10g18080 pycom10g18140 pycom10g18190
rosa_chinensis	RchiOBHm_Chr1g0350061 RchiOBHm_Chr2g0101951 RchiOBHm_Chr2g0155871 RchiOBHm_Chr3g0468611 RchiOBHm_Chr3g0493461 RchiOBHm_Chr4g0401281 RchiOBHm_Chr4g0402021 RchiOBHm_Chr5g0023561 RchiOBHm_Chr5g0023571 RchiOBHm_Chr5g0023741 RchiOBHm_Chr7g0231801 RchiOBHm_Chr7g0234111 RchiOBHm_Chr7g0238791 RchiOBHm_Chr7g0239601
rosa_laevigata	RLG00000032733
rosa_multiflora	Rmu_co8005014.1_g000001 Rmu_co8223904.1_g000001 Rmu_sc0000087.1_g000007 Rmu_sc0000110.1_g000028 Rmu_sc0000172.1_g000003 Rmu_sc0000689.1_g000019 Rmu_sc0000870.1_g000014 Rmu_sc0001372.1_g000011 Rmu_sc0001516.1_g000086 Rmu_sc0001653.1_g000008 Rmu_sc0002862.1_g000001 Rmu_sc0002862.1_g000002 Rmu_sc0008652.1_g000002 Rmu_sc0011789.1_g000002 Rmu_sc0013252.1_g000001 Rmu_sc0017256.1_g000001 Rmu_sc0017907.1_g000002 Rmu_sc0017907.1_g000003 Rmu_sc0018737.1_g000003 Rmu_sc0020536.1_g000001 Rmu_sc0025127.1_g000001 Rmu_sc0028608.1_g000001 Rmu_sc0029703.1_g000001 Rmu_ssc0000027.1_g000015
rosa_roxburghii	Rroxscaffold_1G00055450
rosa_rugosa	Rorug03G0326300 Rorug05G0079400 Rorug05G0352300
rosa_samantha	Rh5AG167200 Rh5AG169300 Rh5BG166700 Rh5CG181100 Rh5CG182300 Rh5DG168600 Rh6BG409700
rosa_wichuraiana	Rw0G001580 Rw0G004990 Rw1G017410 Rw2G027840 Rw4G002740 Rw5G015190 Rw5G015310 Rw7G033830

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	228
AciI	CCGC	1 cut(s)	65
AclWI	GGATC	1 cut(s)	257
AcsI	RAATTY	1 cut(s)	126
AcuI	CTGAAG	1 cut(s)	353
AdeI	CACNNNGTG	1 cut(s)	98
AfaI	GTAC	4 cut(s)	22, 208, 393, 398
AfiI	CCNNNNNNNGG	2 cut(s)	48, 268
AflII	CTTAAG	1 cut(s)	469
AgsI	TTSAA	1 cut(s)	281
AhdI	GACNNNNNGTC	1 cut(s)	146
AjnI	CCWGG	1 cut(s)	217
AluBI	AGCT	4 cut(s)	192, 200, 331, 509
AluI	AGCT	4 cut(s)	192, 200, 331, 509
AlwI	GGATC	1 cut(s)	257
AlwNI	CAGNNNCTG	1 cut(s)	509
AoxI	GGCC	1 cut(s)	213
ApeKI	GCWGC	1 cut(s)	509
ApoI	RAATTY	1 cut(s)	126
AspLEI	GCGC	2 cut(s)	41, 440
AspS9I	GGNCC	1 cut(s)	214
BanII	GRGCYC	1 cut(s)	275
BbvI	GCAGC	1 cut(s)	496
BccI	CCATC	2 cut(s)	113, 178
BceAI	ACGGC	1 cut(s)	26
BciT130I	CCWGG	1 cut(s)	219
BclI	TGATCA	1 cut(s)	301
BfaI	CTAG	1 cut(s)	491
BfmI	CTRYAG	1 cut(s)	449
BfoI	RGCGCY	1 cut(s)	441
BfrI	CTTAAG	1 cut(s)	469
BglI	GCCNNNNNGGC	1 cut(s)	221
BglII	AGATCT	1 cut(s)	430
BisI	GCNGC	1 cut(s)	510
BlsI	GCNGC	1 cut(s)	511
BmcAI	AGTACT	1 cut(s)	208
Bme1390I	CCNGG	1 cut(s)	219
BmeRI	GACNNNNNGTC	1 cut(s)	146
BmgT120I	GGNCC	1 cut(s)	214
BmiI	GGNNCC	2 cut(s)	13, 216
BmrFI	CCNGG	1 cut(s)	219
BmsI	GCATC	1 cut(s)	89
BpuEI	CTTGAG	2 cut(s)	12, 498
BsaJI	CCNNGG	4 cut(s)	163, 217, 218, 262
Bsc4I	CCNNNNNNNGG	2 cut(s)	48, 268
Bse3DI	GCAATG	1 cut(s)	111
BseBI	CCWGG	1 cut(s)	219
BseDI	CCNNGG	4 cut(s)	163, 217, 218, 262
BseLI	CCNNNNNNNGG	2 cut(s)	48, 268
BseMI	GCAATG	1 cut(s)	111
BseMII	CTCAG	1 cut(s)	201
BseXI	GCAGC	1 cut(s)	496
BsgI	GTGCAG	1 cut(s)	378
BshFI	GGCC	1 cut(s)	215
BsiSI	CCGG	1 cut(s)	247
BslFI	GGGAC	1 cut(s)	66
BslI	CCNNNNNNNGG	2 cut(s)	48, 268
BsmFI	GGGAC	1 cut(s)	66
BsnI	GGCC	1 cut(s)	215
Bsp1286I	GDGCHC	1 cut(s)	275
Bsp143I	GATC	4 cut(s)	249, 301, 430, 473
BspACI	CCGC	1 cut(s)	65
BspANI	GGCC	1 cut(s)	215
BspCNI	CTCAG	1 cut(s)	202
BspHI	TCATGA	2 cut(s)	180, 460
BspLI	GGNNCC	2 cut(s)	13, 216
BspMAI	CTGCAG	1 cut(s)	453
BspPI	GGATC	1 cut(s)	257
BspTI	CTTAAG	1 cut(s)	469
BsrDI	GCAATG	1 cut(s)	111
BssECI	CCNNGG	4 cut(s)	163, 217, 218, 262
BssMI	GATC	4 cut(s)	249, 301, 430, 473
BssT1I	CCWWGG	1 cut(s)	163
Bst2UI	CCWGG	1 cut(s)	219
Bst4CI	ACNGT	2 cut(s)	178, 396
BstAFI	CTTAAG	1 cut(s)	469
BstAPI	GCANNNNNTGC	1 cut(s)	86
BstC8I	GCNNGC	1 cut(s)	408
BstDEI	CTNAG	2 cut(s)	196, 210
BstH2I	RGCGCY	1 cut(s)	441
BstHHI	GCGC	2 cut(s)	41, 440
BstKTI	GATC	4 cut(s)	252, 304, 433, 476
BstMBI	GATC	4 cut(s)	249, 301, 430, 473
BstMWI	GCNNNNNNNGC	3 cut(s)	45, 86, 221
BstNI	CCWGG	1 cut(s)	219
BstSCI	CCNGG	1 cut(s)	217
BstSFI	CTRYAG	1 cut(s)	449
BstV1I	GCAGC	1 cut(s)	496
BstX2I	RGATCY	1 cut(s)	430
BstYI	RGATCY	1 cut(s)	430
BsuRI	GGCC	1 cut(s)	215
BtgZI	GCGATG	1 cut(s)	299
BtsI	GCAGTG	1 cut(s)	417
BtsIMutI	CAGTG	1 cut(s)	417
Cac8I	GCNNGC	1 cut(s)	408
CaiI	CAGNNNCTG	1 cut(s)	509
CciI	TCATGA	2 cut(s)	180, 460
CfoI	GCGC	2 cut(s)	41, 440
Cfr13I	GGNCC	1 cut(s)	214
Csp6I	GTAC	4 cut(s)	21, 207, 392, 397
CviAII	CATG	4 cut(s)	181, 268, 461, 533
CviQI	GTAC	4 cut(s)	21, 207, 392, 397
DdeI	CTNAG	2 cut(s)	196, 210
DpnI	GATC	4 cut(s)	251, 303, 432, 475
DpnII	GATC	4 cut(s)	249, 301, 430, 473
DraI	TTTAAA	1 cut(s)	384
DraIII	CACNNNGTG	1 cut(s)	98
DriI	GACNNNNNGTC	1 cut(s)	146
Eam1105I	GACNNNNNGTC	1 cut(s)	146
Eco130I	CCWWGG	1 cut(s)	163
Eco24I	GRGCYC	1 cut(s)	275
Eco57I	CTGAAG	1 cut(s)	353
EcoO109I	RGGNCCY	1 cut(s)	214
EcoRII	CCWGG	1 cut(s)	217
EcoT14I	CCWWGG	1 cut(s)	163
EcoT38I	GRGCYC	1 cut(s)	275
ErhI	CCWWGG	1 cut(s)	163
FaeI	CATG	4 cut(s)	184, 271, 464, 536
FaiI	YATR	5 cut(s)	182, 228, 269, 462, 534
FaqI	GGGAC	1 cut(s)	66
FatI	CATG	4 cut(s)	180, 267, 460, 532
FbaI	TGATCA	1 cut(s)	301
Fnu4HI	GCNGC	1 cut(s)	510
FriOI	GRGCYC	1 cut(s)	275
Fsp4HI	GCNGC	1 cut(s)	510
FspBI	CTAG	1 cut(s)	491
GlaI	GCGC	2 cut(s)	40, 439
GluI	GCNGC	1 cut(s)	510
HaeII	RGCGCY	1 cut(s)	441
HaeIII	GGCC	1 cut(s)	215
HapII	CCGG	1 cut(s)	247
HhaI	GCGC	2 cut(s)	41, 440
Hin1II	CATG	4 cut(s)	184, 271, 464, 536
Hin6I	GCGC	2 cut(s)	39, 438
HinP1I	GCGC	2 cut(s)	39, 438
HinfI	GANTC	1 cut(s)	232
HpaII	CCGG	1 cut(s)	247
Hpy166II	GTNNAC	2 cut(s)	70, 399
Hpy188I	TCNGA	1 cut(s)	237
Hpy188III	TCNNGA	5 cut(s)	29, 138, 181, 278, 461
Hpy8I	GTNNAC	2 cut(s)	70, 399
Hpy99I	CGWCG	1 cut(s)	47
HpyAV	CCTTC	1 cut(s)	515
HpyCH4III	ACNGT	2 cut(s)	178, 396
HpyCH4V	TGCA	6 cut(s)	80, 341, 359, 365, 406, 451
HpyF10VI	GCNNNNNNNGC	3 cut(s)	45, 86, 221
HpyF3I	CTNAG	2 cut(s)	196, 210
Hsp92II	CATG	4 cut(s)	184, 271, 464, 536
HspAI	GCGC	2 cut(s)	39, 438
Ksp22I	TGATCA	1 cut(s)	301
Kzo9I	GATC	4 cut(s)	249, 301, 430, 473
LmnI	GCTCC	3 cut(s)	17, 189, 506
Lsp1109I	GCAGC	1 cut(s)	496
LweI	GCATC	1 cut(s)	89
MaeI	CTAG	1 cut(s)	491
MalI	GATC	4 cut(s)	251, 303, 432, 475
MboI	GATC	4 cut(s)	249, 301, 430, 473
MboII	GAAGA	3 cut(s)	346, 435, 565
MflI	RGATCY	1 cut(s)	430
MhlI	GDGCHC	1 cut(s)	275
MluCI	AATT	2 cut(s)	126, 133
MnlI	CCTC	5 cut(s)	25, 205, 257, 476, 487
MseI	TTAA	4 cut(s)	158, 383, 470, 485
MspCI	CTTAAG	1 cut(s)	469
MspI	CCGG	1 cut(s)	247
MspR9I	CCNGG	1 cut(s)	219
MvaI	CCWGG	1 cut(s)	219
MwoI	GCNNNNNNNGC	3 cut(s)	45, 86, 221
NdeII	GATC	4 cut(s)	249, 301, 430, 473
NlaIII	CATG	4 cut(s)	184, 271, 464, 536
NlaIV	GGNNCC	2 cut(s)	13, 216
NmeAIII	GCCGAG	1 cut(s)	414
PagI	TCATGA	2 cut(s)	180, 460
PasI	CCCWGGG	1 cut(s)	218
PfeI	GAWTC	1 cut(s)	232
PkrI	GCNGC	1 cut(s)	511
PsiI	TTATAA	1 cut(s)	228
Psp6I	CCWGG	1 cut(s)	217
PspGI	CCWGG	1 cut(s)	217
PspN4I	GGNNCC	2 cut(s)	13, 216
PspPI	GGNCC	1 cut(s)	214
PstI	CTGCAG	1 cut(s)	453
PstNI	CAGNNNCTG	1 cut(s)	509
PsuI	RGATCY	1 cut(s)	430
RsaI	GTAC	4 cut(s)	22, 208, 393, 398
RsaNI	GTAC	4 cut(s)	21, 207, 392, 397
SaqAI	TTAA	4 cut(s)	158, 383, 470, 485
SatI	GCNGC	1 cut(s)	510
Sau3AI	GATC	4 cut(s)	249, 301, 430, 473
Sau96I	GGNCC	1 cut(s)	214
ScaI	AGTACT	1 cut(s)	208
ScrFI	CCNGG	1 cut(s)	219
SduI	GDGCHC	1 cut(s)	275
SfaNI	GCATC	1 cut(s)	89
SfcI	CTRYAG	1 cut(s)	449
SmlI	CTYRAG	3 cut(s)	27, 469, 513
SmoI	CTYRAG	3 cut(s)	27, 469, 513
Sse9I	AATT	2 cut(s)	126, 133
SsiI	CCGC	1 cut(s)	65
SspMI	CTAG	1 cut(s)	491
StyD4I	CCNGG	1 cut(s)	217
StyI	CCWWGG	1 cut(s)	163
TaaI	ACNGT	2 cut(s)	178, 396
TasI	AATT	2 cut(s)	126, 133
TatI	WGTACW	2 cut(s)	20, 206
TfiI	GAWTC	1 cut(s)	232
Tru1I	TTAA	4 cut(s)	158, 383, 470, 485
Tru9I	TTAA	4 cut(s)	158, 383, 470, 485
TscAI	CASTG	1 cut(s)	417
TseI	GCWGC	1 cut(s)	509
TspDTI	ATGAA	1 cut(s)	521
TspRI	CASTG	1 cut(s)	417
Vha464I	CTTAAG	1 cut(s)	469
XapI	RAATTY	1 cut(s)	126
XspI	CTAG	1 cut(s)	491
ZrmI	AGTACT	1 cut(s)	208

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.