Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5C

Orthogroup ID

OG0000729

Physical Location & Seq

Genomic Coordinates Reverse (-)

18192594 .. 18193954

Gene Structure 1361 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5CG182300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 300 bp

ATGGGCTCTCTTGAAGCGATGGCAAAAGGGAGTGATCAACGGTACCTGGGAGATACAGCGAAGCTGAAGATTGCACAGGGGGTGGTTGGTGCAGTTGCAGACAAAGGTTCTGTTTTAAAGTTTGTACCATACACAATGCAAGCAGTGAAACAAGGTTTCCAAGATCTCGGCGCTTCTTCTCTGCAGTCTGCTCATGACCTCTTAAGATCAGGGGTTTTAAGGCTAGAGGTAAGAACAGGAGCTGCTCAAGTGGAAGGTGGAGTTCATGGGTTGGTCTCTTATAAGAAGAAGTCATTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0003938 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006139 GO:0006163 GO:0006164 GO:0006183 GO:0006725 GO:0006753 GO:0006793 GO:0006796 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009116 GO:0009117 GO:0009119 GO:0009141 GO:0009142 GO:0009144 GO:0009145 GO:0009150 GO:0009152 GO:0009163 GO:0009165 GO:0009199 GO:0009201 GO:0009205 GO:0009206 GO:0009259 GO:0009260 GO:0009719 GO:0009725 GO:0009735 GO:0009987 GO:0010033 GO:0016491 GO:0016614 GO:0016616 GO:0018130 GO:0019438 GO:0019637 GO:0019693 GO:0034404 GO:0034641 GO:0034654 GO:0042221 GO:0042278 GO:0042451 GO:0042455 GO:0044237 GO:0044238 GO:0044249 GO:0044271 GO:0044281 GO:0044283 GO:0044424 GO:0044444 GO:0044464 GO:0046039 GO:0046128 GO:0046129 GO:0046390 GO:0046483 GO:0050896 GO:0055086 GO:0055114 GO:0071704 GO:0072521 GO:0072522 GO:0090407 GO:1901068 GO:1901070 GO:1901135 GO:1901137 GO:1901293 GO:1901360 GO:1901362 GO:1901564 GO:1901566 GO:1901576 GO:1901657 GO:1901659

KEGG Pathways

Metabolic & Signaling

ko00230 ko00983 ko01100 ko01110 map00230 map00983 map01100 map01110

Pfam Domains

Protein Families

IMPDH

Protein Analysis

99

Amino Acids

10.41

Weight (kDa)

9.7

Isoelectric Point (pI)

18.67

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
IMPDH	PF00478	1 - 89	8e-14	IMP dehydrogenase / GMP reductase domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Image

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Publication-ready

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Orthologous Genes (Group: OG0000729)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G16350 AT1G79470
fragaria_vesca	FvH4_3g14430 FvH4_3g14430
malus_domestica	MD05G1237000.v1.1 MD05G1237500.v1.1 MD10G1213800.v1.1
prunus_persica	Prupe.4G129200_v2.0.a1 Prupe.4G129200_v2.0.a1
pyrus_communis	pycom05g21380 pycom10g18050 pycom10g18080 pycom10g18140 pycom10g18190
rosa_chinensis	RchiOBHm_Chr1g0350061 RchiOBHm_Chr2g0101951 RchiOBHm_Chr2g0155871 RchiOBHm_Chr3g0468611 RchiOBHm_Chr3g0493461 RchiOBHm_Chr4g0401281 RchiOBHm_Chr4g0402021 RchiOBHm_Chr5g0023561 RchiOBHm_Chr5g0023571 RchiOBHm_Chr5g0023741 RchiOBHm_Chr7g0231801 RchiOBHm_Chr7g0234111 RchiOBHm_Chr7g0238791 RchiOBHm_Chr7g0239601
rosa_laevigata	RLG00000032733
rosa_multiflora	Rmu_co8005014.1_g000001 Rmu_co8223904.1_g000001 Rmu_sc0000087.1_g000007 Rmu_sc0000110.1_g000028 Rmu_sc0000172.1_g000003 Rmu_sc0000689.1_g000019 Rmu_sc0000870.1_g000014 Rmu_sc0001372.1_g000011 Rmu_sc0001516.1_g000086 Rmu_sc0001653.1_g000008 Rmu_sc0002862.1_g000001 Rmu_sc0002862.1_g000002 Rmu_sc0008652.1_g000002 Rmu_sc0011789.1_g000002 Rmu_sc0013252.1_g000001 Rmu_sc0017256.1_g000001 Rmu_sc0017907.1_g000002 Rmu_sc0017907.1_g000003 Rmu_sc0018737.1_g000003 Rmu_sc0020536.1_g000001 Rmu_sc0025127.1_g000001 Rmu_sc0028608.1_g000001 Rmu_sc0029703.1_g000001 Rmu_ssc0000027.1_g000015
rosa_roxburghii	Rroxscaffold_1G00055450
rosa_rugosa	Rorug03G0326300 Rorug05G0079400 Rorug05G0352300
rosa_samantha	Rh5AG167200 Rh5AG169300 Rh5BG166700 Rh5CG181100 Rh5CG182300 Rh5DG168600 Rh6BG409700
rosa_wichuraiana	Rw0G001580 Rw0G004990 Rw1G017410 Rw2G027840 Rw4G002740 Rw5G015190 Rw5G015310 Rw7G033830

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	282
Acc65I	GGTACC	1 cut(s)	42
AccB1I	GGYRCC	1 cut(s)	42
AcuI	CTGAAG	1 cut(s)	86
AfaI	GTAC	2 cut(s)	44, 126
AflII	CTTAAG	1 cut(s)	202
AgsI	TTSAA	1 cut(s)	14
AjnI	CCWGG	1 cut(s)	45
AluBI	AGCT	2 cut(s)	64, 242
AluI	AGCT	2 cut(s)	64, 242
Alw26I	GTCTC	1 cut(s)	280
AlwNI	CAGNNNCTG	1 cut(s)	242
ApeKI	GCWGC	1 cut(s)	242
Asp718I	GGTACC	1 cut(s)	42
AspLEI	GCGC	1 cut(s)	173
BanI	GGYRCC	1 cut(s)	42
BanII	GRGCYC	1 cut(s)	8
BbvI	GCAGC	1 cut(s)	229
BccI	CCATC	1 cut(s)	13
BciT130I	CCWGG	1 cut(s)	47
BclI	TGATCA	1 cut(s)	34
BcoDI	GTCTC	1 cut(s)	280
BfaI	CTAG	1 cut(s)	224
BfmI	CTRYAG	1 cut(s)	182
BfoI	RGCGCY	1 cut(s)	174
BfrI	CTTAAG	1 cut(s)	202
BglII	AGATCT	1 cut(s)	163
BisI	GCNGC	1 cut(s)	243
BlsI	GCNGC	1 cut(s)	244
Bme1390I	CCNGG	1 cut(s)	47
BmiI	GGNNCC	1 cut(s)	44
BmrFI	CCNGG	1 cut(s)	47
BpuEI	CTTGAG	1 cut(s)	231
BsaI	GGTCTC	1 cut(s)	280
BsaJI	CCNNGG	1 cut(s)	46
BseBI	CCWGG	1 cut(s)	47
BseDI	CCNNGG	1 cut(s)	46
BseXI	GCAGC	1 cut(s)	229
BsgI	GTGCAG	1 cut(s)	111
BshNI	GGYRCC	1 cut(s)	42
BsmAI	GTCTC	1 cut(s)	280
Bso31I	GGTCTC	1 cut(s)	280
Bsp1286I	GDGCHC	1 cut(s)	8
Bsp143I	GATC	3 cut(s)	34, 163, 206
BspHI	TCATGA	1 cut(s)	193
BspLI	GGNNCC	1 cut(s)	44
BspMAI	CTGCAG	1 cut(s)	186
BspT107I	GGYRCC	1 cut(s)	42
BspTI	CTTAAG	1 cut(s)	202
BspTNI	GGTCTC	1 cut(s)	280
BssECI	CCNNGG	1 cut(s)	46
BssMI	GATC	3 cut(s)	34, 163, 206
Bst2UI	CCWGG	1 cut(s)	47
Bst4CI	ACNGT	1 cut(s)	42
BstAFI	CTTAAG	1 cut(s)	202
BstC8I	GCNNGC	1 cut(s)	141
BstH2I	RGCGCY	1 cut(s)	174
BstHHI	GCGC	1 cut(s)	173
BstKTI	GATC	3 cut(s)	37, 166, 209
BstMAI	GTCTC	1 cut(s)	280
BstMBI	GATC	3 cut(s)	34, 163, 206
BstNI	CCWGG	1 cut(s)	47
BstSCI	CCNGG	1 cut(s)	45
BstSFI	CTRYAG	1 cut(s)	182
BstV1I	GCAGC	1 cut(s)	229
BstX2I	RGATCY	1 cut(s)	163
BstYI	RGATCY	1 cut(s)	163
BtgZI	GCGATG	1 cut(s)	32
BtsI	GCAGTG	1 cut(s)	150
BtsIMutI	CAGTG	1 cut(s)	150
Cac8I	GCNNGC	1 cut(s)	141
CaiI	CAGNNNCTG	1 cut(s)	242
CciI	TCATGA	1 cut(s)	193
CfoI	GCGC	1 cut(s)	173
Csp6I	GTAC	2 cut(s)	43, 125
CviAII	CATG	2 cut(s)	194, 266
CviJI	RGCY	4 cut(s)	6, 64, 223, 242
CviKI_1	RGCY	4 cut(s)	6, 64, 223, 242
CviQI	GTAC	2 cut(s)	43, 125
DpnI	GATC	3 cut(s)	36, 165, 208
DpnII	GATC	3 cut(s)	34, 163, 206
DraI	TTTAAA	1 cut(s)	117
Eco24I	GRGCYC	1 cut(s)	8
Eco31I	GGTCTC	1 cut(s)	280
Eco57I	CTGAAG	1 cut(s)	86
EcoRII	CCWGG	1 cut(s)	45
EcoT38I	GRGCYC	1 cut(s)	8
FaeI	CATG	2 cut(s)	197, 269
FaiI	YATR	4 cut(s)	130, 195, 267, 282
FatI	CATG	2 cut(s)	193, 265
FbaI	TGATCA	1 cut(s)	34
Fnu4HI	GCNGC	1 cut(s)	243
FriOI	GRGCYC	1 cut(s)	8
Fsp4HI	GCNGC	1 cut(s)	243
FspBI	CTAG	1 cut(s)	224
GlaI	GCGC	1 cut(s)	172
GluI	GCNGC	1 cut(s)	243
HaeII	RGCGCY	1 cut(s)	174
HhaI	GCGC	1 cut(s)	173
Hin1II	CATG	2 cut(s)	197, 269
Hin6I	GCGC	1 cut(s)	171
HinP1I	GCGC	1 cut(s)	171
Hpy188III	TCNNGA	2 cut(s)	11, 194
HpyAV	CCTTC	1 cut(s)	248
HpyCH4III	ACNGT	1 cut(s)	42
HpyCH4V	TGCA	5 cut(s)	74, 92, 98, 139, 184
Hsp92II	CATG	2 cut(s)	197, 269
HspAI	GCGC	1 cut(s)	171
KpnI	GGTACC	1 cut(s)	46
Ksp22I	TGATCA	1 cut(s)	34
Kzo9I	GATC	3 cut(s)	34, 163, 206
LmnI	GCTCC	1 cut(s)	239
LpnPI	CCDG	5 cut(s)	32, 59, 62, 195, 222
Lsp1109I	GCAGC	1 cut(s)	229
MaeI	CTAG	1 cut(s)	224
MalI	GATC	3 cut(s)	36, 165, 208
MboI	GATC	3 cut(s)	34, 163, 206
MboII	GAAGA	3 cut(s)	79, 168, 298
MflI	RGATCY	1 cut(s)	163
MhlI	GDGCHC	1 cut(s)	8
MnlI	CCTC	2 cut(s)	209, 220
MseI	TTAA	3 cut(s)	116, 203, 218
MspCI	CTTAAG	1 cut(s)	202
MspR9I	CCNGG	1 cut(s)	47
MvaI	CCWGG	1 cut(s)	47
NdeII	GATC	3 cut(s)	34, 163, 206
NlaIII	CATG	2 cut(s)	197, 269
NlaIV	GGNNCC	1 cut(s)	44
NmeAIII	GCCGAG	1 cut(s)	147
PagI	TCATGA	1 cut(s)	193
PkrI	GCNGC	1 cut(s)	244
PsiI	TTATAA	1 cut(s)	282
Psp6I	CCWGG	1 cut(s)	45
PspGI	CCWGG	1 cut(s)	45
PspN4I	GGNNCC	1 cut(s)	44
PstI	CTGCAG	1 cut(s)	186
PstNI	CAGNNNCTG	1 cut(s)	242
PsuI	RGATCY	1 cut(s)	163
RsaI	GTAC	2 cut(s)	44, 126
RsaNI	GTAC	2 cut(s)	43, 125
SaqAI	TTAA	3 cut(s)	116, 203, 218
SatI	GCNGC	1 cut(s)	243
Sau3AI	GATC	3 cut(s)	34, 163, 206
ScrFI	CCNGG	1 cut(s)	47
SduI	GDGCHC	1 cut(s)	8
SetI	ASST	8 cut(s)	48, 66, 109, 157, 201, 231, 244, 259
SfcI	CTRYAG	1 cut(s)	182
SmlI	CTYRAG	2 cut(s)	202, 246
SmoI	CTYRAG	2 cut(s)	202, 246
SspMI	CTAG	1 cut(s)	224
StyD4I	CCNGG	1 cut(s)	45
TaaI	ACNGT	1 cut(s)	42
Tru1I	TTAA	3 cut(s)	116, 203, 218
Tru9I	TTAA	3 cut(s)	116, 203, 218
TscAI	CASTG	1 cut(s)	150
TseI	GCWGC	1 cut(s)	242
TspDTI	ATGAA	1 cut(s)	254
TspRI	CASTG	1 cut(s)	150
Vha464I	CTTAAG	1 cut(s)	202
XspI	CTAG	1 cut(s)	224

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.