Rw5G015190

Catalyzes the conversion of inosine 5'-phosphate (IMP) to xanthosine 5'-phosphate (XMP), the first committed and rate- limiting step in the de novo synthesis of guanine nucleotides, and therefore plays an important role in the regulation of cell growth

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr5
Physical Location & Seq
Reverse (-)
18497222 .. 18498580
1359 bp
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UTR
Exon/CDS
Intron
Rw5G015190.1

Sequence Viewer

Length: 300 bp
ATGGGCTCTCTTGAAGCGATGACAAAAGGGAGTGATCAAAGGTATCTGGGAGATACAGCGAAGCTGAAGATTGCACAGGGGGTGGTTGGTGCAGTTGCAGACAAAGGTTCTGTTTTAAAGTTTGTACCGTACACAATGCAAGCAGTGAAACAAGGTTTCCAAGATCTCGGCGCTTCTTCTCTGCAGTCTGCTCATGACCTCTTAAGACCAGGGGTTTTAAGGCTAGAGGTAAGAACAGGAGCTGCTCAAGTGGAAGGTGGAGTTCATGGGTTGGTTTCTTACGAGAAGAAGTCATTTTGA

Protein Analysis

99

Amino Acids

10.45

Weight (kDa)

9.35

Isoelectric Point (pI)

13.88

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
IMPDH PF00478 1 - 89 7.1e-14 IMP dehydrogenase / GMP reductase domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000729)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G16350 AT1G79470
fragaria_vesca FvH4_3g14430 FvH4_3g14430
malus_domestica MD05G1237000.v1.1 MD05G1237500.v1.1 MD10G1213800.v1.1
prunus_persica Prupe.4G129200_v2.0.a1 Prupe.4G129200_v2.0.a1
pyrus_communis pycom05g21380 pycom10g18050 pycom10g18080 pycom10g18140 pycom10g18190
rosa_chinensis RchiOBHm_Chr1g0350061 RchiOBHm_Chr2g0101951 RchiOBHm_Chr2g0155871 RchiOBHm_Chr3g0468611 RchiOBHm_Chr3g0493461 RchiOBHm_Chr4g0401281 RchiOBHm_Chr4g0402021 RchiOBHm_Chr5g0023561 RchiOBHm_Chr5g0023571 RchiOBHm_Chr5g0023741 RchiOBHm_Chr7g0231801 RchiOBHm_Chr7g0234111 RchiOBHm_Chr7g0238791 RchiOBHm_Chr7g0239601
rosa_laevigata RLG00000032733
rosa_multiflora Rmu_co8005014.1_g000001 Rmu_co8223904.1_g000001 Rmu_sc0000087.1_g000007 Rmu_sc0000110.1_g000028 Rmu_sc0000172.1_g000003 Rmu_sc0000689.1_g000019 Rmu_sc0000870.1_g000014 Rmu_sc0001372.1_g000011 Rmu_sc0001516.1_g000086 Rmu_sc0001653.1_g000008 Rmu_sc0002862.1_g000001 Rmu_sc0002862.1_g000002 Rmu_sc0008652.1_g000002 Rmu_sc0011789.1_g000002 Rmu_sc0013252.1_g000001 Rmu_sc0017256.1_g000001 Rmu_sc0017907.1_g000002 Rmu_sc0017907.1_g000003 Rmu_sc0018737.1_g000003 Rmu_sc0020536.1_g000001 Rmu_sc0025127.1_g000001 Rmu_sc0028608.1_g000001 Rmu_sc0029703.1_g000001 Rmu_ssc0000027.1_g000015
rosa_roxburghii Rroxscaffold_1G00055450
rosa_rugosa Rorug03G0326300 Rorug05G0079400 Rorug05G0352300
rosa_samantha Rh5AG167200 Rh5AG169300 Rh5BG166700 Rh5CG181100 Rh5CG182300 Rh5DG168600 Rh6BG409700
rosa_wichuraiana Rw0G001580 Rw0G004990 Rw1G017410 Rw2G027840 Rw4G002740 Rw5G015190 Rw5G015310 Rw7G033830

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AcuI CTGAAG 1 cut(s) 86
AfaI GTAC 2 cut(s) 126, 131
AflII CTTAAG 1 cut(s) 202
AgsI TTSAA 1 cut(s) 14
AjnI CCWGG 1 cut(s) 208
AluBI AGCT 2 cut(s) 64, 242
AluI AGCT 2 cut(s) 64, 242
AlwNI CAGNNNCTG 1 cut(s) 242
ApeKI GCWGC 1 cut(s) 242
AspLEI GCGC 1 cut(s) 173
BanII GRGCYC 1 cut(s) 8
BbvI GCAGC 1 cut(s) 229
BciT130I CCWGG 1 cut(s) 210
BclI TGATCA 1 cut(s) 34
BfaI CTAG 1 cut(s) 224
BfmI CTRYAG 1 cut(s) 182
BfoI RGCGCY 1 cut(s) 174
BfrI CTTAAG 1 cut(s) 202
BglII AGATCT 1 cut(s) 163
BisI GCNGC 1 cut(s) 243
BlsI GCNGC 1 cut(s) 244
Bme1390I CCNGG 1 cut(s) 210
BmrFI CCNGG 1 cut(s) 210
BpuEI CTTGAG 1 cut(s) 231
BsaJI CCNNGG 1 cut(s) 209
BseBI CCWGG 1 cut(s) 210
BseDI CCNNGG 1 cut(s) 209
BseXI GCAGC 1 cut(s) 229
BsgI GTGCAG 1 cut(s) 111
Bsp1286I GDGCHC 1 cut(s) 8
Bsp143I GATC 2 cut(s) 34, 163
BspHI TCATGA 1 cut(s) 193
BspMAI CTGCAG 1 cut(s) 186
BspTI CTTAAG 1 cut(s) 202
BssECI CCNNGG 1 cut(s) 209
BssMI GATC 2 cut(s) 34, 163
Bst2UI CCWGG 1 cut(s) 210
Bst4CI ACNGT 1 cut(s) 129
BstAFI CTTAAG 1 cut(s) 202
BstC8I GCNNGC 1 cut(s) 141
BstH2I RGCGCY 1 cut(s) 174
BstHHI GCGC 1 cut(s) 173
BstKTI GATC 2 cut(s) 37, 166
BstMBI GATC 2 cut(s) 34, 163
BstNI CCWGG 1 cut(s) 210
BstSCI CCNGG 1 cut(s) 208
BstSFI CTRYAG 1 cut(s) 182
BstV1I GCAGC 1 cut(s) 229
BstX2I RGATCY 1 cut(s) 163
BstYI RGATCY 1 cut(s) 163
BtgZI GCGATG 1 cut(s) 32
BtsI GCAGTG 1 cut(s) 150
BtsIMutI CAGTG 1 cut(s) 150
Cac8I GCNNGC 1 cut(s) 141
CaiI CAGNNNCTG 1 cut(s) 242
CciI TCATGA 1 cut(s) 193
CfoI GCGC 1 cut(s) 173
Csp6I GTAC 2 cut(s) 125, 130
CviAII CATG 2 cut(s) 194, 266
CviJI RGCY 4 cut(s) 6, 64, 223, 242
CviKI_1 RGCY 4 cut(s) 6, 64, 223, 242
CviQI GTAC 2 cut(s) 125, 130
DpnI GATC 2 cut(s) 36, 165
DpnII GATC 2 cut(s) 34, 163
DraI TTTAAA 1 cut(s) 117
Eco24I GRGCYC 1 cut(s) 8
Eco57I CTGAAG 1 cut(s) 86
EcoRII CCWGG 1 cut(s) 208
EcoT38I GRGCYC 1 cut(s) 8
FaeI CATG 2 cut(s) 197, 269
FaiI YATR 2 cut(s) 195, 267
FatI CATG 2 cut(s) 193, 265
FbaI TGATCA 1 cut(s) 34
Fnu4HI GCNGC 1 cut(s) 243
FriOI GRGCYC 1 cut(s) 8
Fsp4HI GCNGC 1 cut(s) 243
FspBI CTAG 1 cut(s) 224
GlaI GCGC 1 cut(s) 172
GluI GCNGC 1 cut(s) 243
HaeII RGCGCY 1 cut(s) 174
HhaI GCGC 1 cut(s) 173
Hin1II CATG 2 cut(s) 197, 269
Hin6I GCGC 1 cut(s) 171
HinP1I GCGC 1 cut(s) 171
Hpy166II GTNNAC 1 cut(s) 132
Hpy188III TCNNGA 2 cut(s) 11, 194
Hpy8I GTNNAC 1 cut(s) 132
HpyAV CCTTC 1 cut(s) 248
HpyCH4III ACNGT 1 cut(s) 129
HpyCH4V TGCA 5 cut(s) 74, 92, 98, 139, 184
Hsp92II CATG 2 cut(s) 197, 269
HspAI GCGC 1 cut(s) 171
Ksp22I TGATCA 1 cut(s) 34
Kzo9I GATC 2 cut(s) 34, 163
LmnI GCTCC 1 cut(s) 239
LpnPI CCDG 5 cut(s) 32, 62, 195, 222, 222
Lsp1109I GCAGC 1 cut(s) 229
MaeI CTAG 1 cut(s) 224
MalI GATC 2 cut(s) 36, 165
MboI GATC 2 cut(s) 34, 163
MboII GAAGA 3 cut(s) 79, 168, 298
MflI RGATCY 1 cut(s) 163
MhlI GDGCHC 1 cut(s) 8
MnlI CCTC 2 cut(s) 209, 220
MseI TTAA 3 cut(s) 116, 203, 218
MspCI CTTAAG 1 cut(s) 202
MspR9I CCNGG 1 cut(s) 210
MvaI CCWGG 1 cut(s) 210
NdeII GATC 2 cut(s) 34, 163
NlaIII CATG 2 cut(s) 197, 269
NmeAIII GCCGAG 1 cut(s) 147
PagI TCATGA 1 cut(s) 193
PkrI GCNGC 1 cut(s) 244
Psp6I CCWGG 1 cut(s) 208
PspGI CCWGG 1 cut(s) 208
PstI CTGCAG 1 cut(s) 186
PstNI CAGNNNCTG 1 cut(s) 242
PsuI RGATCY 1 cut(s) 163
RsaI GTAC 2 cut(s) 126, 131
RsaNI GTAC 2 cut(s) 125, 130
SaqAI TTAA 3 cut(s) 116, 203, 218
SatI GCNGC 1 cut(s) 243
Sau3AI GATC 2 cut(s) 34, 163
ScrFI CCNGG 1 cut(s) 210
SduI GDGCHC 1 cut(s) 8
SetI ASST 8 cut(s) 44, 66, 109, 157, 201, 231, 244, 259
SfcI CTRYAG 1 cut(s) 182
SmlI CTYRAG 2 cut(s) 202, 246
SmoI CTYRAG 2 cut(s) 202, 246
SspMI CTAG 1 cut(s) 224
StyD4I CCNGG 1 cut(s) 208
TaaI ACNGT 1 cut(s) 129
Tru1I TTAA 3 cut(s) 116, 203, 218
Tru9I TTAA 3 cut(s) 116, 203, 218
TscAI CASTG 1 cut(s) 150
TseI GCWGC 1 cut(s) 242
TspDTI ATGAA 1 cut(s) 254
TspRI CASTG 1 cut(s) 150
Vha464I CTTAAG 1 cut(s) 202
XspI CTAG 1 cut(s) 224
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.