Rmu_co8223904.1_g000001

GPI ethanolamine phosphate transferase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_co8223904.1
OG0000729
Physical Location & Seq
Forward (+)
329 .. 745
417 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_co8223904.1_g000001.1.cds

Sequence Viewer

Length: 321 bp
atgggagggaaagaggtagaagaaagcagcagaagccggaaagtagtgaacttgagcgtgagaagaaaatggctgaagacgaaagagaaatggctcgtcgtcgtcggcgtcgtccttcatgccgtatacatgctcagcatcttcgacatctacttcaagtcccccgttgttcacggcatggatctcgtctcccctcgcttcccctcccccgccaaacgcctcgtcttactcgtcgctgatggtctccgagcggacaagttcttcgagtccgacgccgccggaaagttcagagcgccgtttctgaggagcgtgatcaaggag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00563 ko01100 map00563 map01100
Pfam Domains
Protein Families
Phosphodiest PigN Sulfatase

Protein Analysis

107

Amino Acids

12.16

Weight (kDa)

10.19

Isoelectric Point (pI)

63.08

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000729)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G16350 AT1G79470
fragaria_vesca FvH4_3g14430 FvH4_3g14430
malus_domestica MD05G1237000.v1.1 MD05G1237500.v1.1 MD10G1213800.v1.1
prunus_persica Prupe.4G129200_v2.0.a1 Prupe.4G129200_v2.0.a1
pyrus_communis pycom05g21380 pycom10g18050 pycom10g18080 pycom10g18140 pycom10g18190
rosa_chinensis RchiOBHm_Chr1g0350061 RchiOBHm_Chr2g0101951 RchiOBHm_Chr2g0155871 RchiOBHm_Chr3g0468611 RchiOBHm_Chr3g0493461 RchiOBHm_Chr4g0401281 RchiOBHm_Chr4g0402021 RchiOBHm_Chr5g0023561 RchiOBHm_Chr5g0023571 RchiOBHm_Chr5g0023741 RchiOBHm_Chr7g0231801 RchiOBHm_Chr7g0234111 RchiOBHm_Chr7g0238791 RchiOBHm_Chr7g0239601
rosa_laevigata RLG00000032733
rosa_multiflora Rmu_co8005014.1_g000001 Rmu_co8223904.1_g000001 Rmu_sc0000087.1_g000007 Rmu_sc0000110.1_g000028 Rmu_sc0000172.1_g000003 Rmu_sc0000689.1_g000019 Rmu_sc0000870.1_g000014 Rmu_sc0001372.1_g000011 Rmu_sc0001516.1_g000086 Rmu_sc0001653.1_g000008 Rmu_sc0002862.1_g000001 Rmu_sc0002862.1_g000002 Rmu_sc0008652.1_g000002 Rmu_sc0011789.1_g000002 Rmu_sc0013252.1_g000001 Rmu_sc0017256.1_g000001 Rmu_sc0017907.1_g000002 Rmu_sc0017907.1_g000003 Rmu_sc0018737.1_g000003 Rmu_sc0020536.1_g000001 Rmu_sc0025127.1_g000001 Rmu_sc0028608.1_g000001 Rmu_sc0029703.1_g000001 Rmu_ssc0000027.1_g000015
rosa_roxburghii Rroxscaffold_1G00055450
rosa_rugosa Rorug03G0326300 Rorug05G0079400 Rorug05G0352300
rosa_samantha Rh5AG167200 Rh5AG169300 Rh5BG166700 Rh5CG181100 Rh5CG182300 Rh5DG168600 Rh6BG409700
rosa_wichuraiana Rw0G001580 Rw0G004990 Rw1G017410 Rw2G027840 Rw4G002740 Rw5G015190 Rw5G015310 Rw7G033830

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 251
AccI GTMKAC 1 cut(s) 126
AciI CCGC 3 cut(s) 210, 251, 276
AclWI GGATC 1 cut(s) 189
AcuI CTGAAG 1 cut(s) 95
AcyI GRCGYC 2 cut(s) 108, 273
AgsI TTSAA 1 cut(s) 157
Alw26I GTCTC 2 cut(s) 193, 248
AlwI GGATC 1 cut(s) 189
ApeKI GCWGC 1 cut(s) 27
ArsI GACNNNNNNTTYG 4 cut(s) 207, 239, 245, 277
AspLEI GCGC 1 cut(s) 295
BbsI GAAGAC 1 cut(s) 83
BbvI GCAGC 1 cut(s) 39
BccI CCATC 1 cut(s) 233
BceAI ACGGC 3 cut(s) 107, 190, 280
BcgI CGANNNNNNTGC 2 cut(s) 166, 200
BclI TGATCA 1 cut(s) 312
BcoDI GTCTC 2 cut(s) 193, 248
BfoI RGCGCY 1 cut(s) 296
BisI GCNGC 2 cut(s) 28, 276
BlpI GCTNAGC 1 cut(s) 134
BlsI GCNGC 2 cut(s) 29, 277
BmsI GCATC 1 cut(s) 147
BpiI GAAGAC 1 cut(s) 83
Bpu1102I GCTNAGC 1 cut(s) 134
BpuEI CTTGAG 1 cut(s) 73
BsaHI GRCGYC 2 cut(s) 108, 273
BsaI GGTCTC 1 cut(s) 248
BseMII CTCAG 2 cut(s) 148, 293
BseRI GAGGAG 1 cut(s) 319
BseXI GCAGC 1 cut(s) 39
BsiSI CCGG 2 cut(s) 37, 279
BslFI GGGAC 1 cut(s) 145
BsmAI GTCTC 2 cut(s) 193, 248
BsmBI CGTCTC 1 cut(s) 193
BsmFI GGGAC 1 cut(s) 145
Bso31I GGTCTC 1 cut(s) 248
Bsp143I GATC 2 cut(s) 181, 312
Bsp1720I GCTNAGC 1 cut(s) 134
BspACI CCGC 3 cut(s) 210, 251, 276
BspCNI CTCAG 2 cut(s) 147, 294
BspPI GGATC 1 cut(s) 189
BspTNI GGTCTC 1 cut(s) 248
BsrBI CCGCTC 1 cut(s) 251
BssMI GATC 2 cut(s) 181, 312
BssNAI GTATAC 1 cut(s) 127
BssNI GRCGYC 2 cut(s) 108, 273
Bst1107I GTATAC 1 cut(s) 127
BstACI GRCGYC 2 cut(s) 108, 273
BstDEI CTNAG 2 cut(s) 134, 302
BstH2I RGCGCY 1 cut(s) 296
BstHHI GCGC 1 cut(s) 295
BstKTI GATC 2 cut(s) 184, 315
BstMAI GTCTC 2 cut(s) 193, 248
BstMBI GATC 2 cut(s) 181, 312
BstMWI GCNNNNNNNGC 1 cut(s) 33
BstNSI RCATGY 1 cut(s) 133
BstV1I GCAGC 1 cut(s) 39
BstV2I GAAGAC 1 cut(s) 83
BstX2I RGATCY 1 cut(s) 181
BstYI RGATCY 1 cut(s) 181
BstZ17I GTATAC 1 cut(s) 127
CfoI GCGC 1 cut(s) 295
CseI GACGC 2 cut(s) 97, 281
CviAII CATG 3 cut(s) 119, 130, 178
CviJI RGCY 3 cut(s) 36, 73, 94
CviKI_1 RGCY 3 cut(s) 36, 73, 94
DdeI CTNAG 2 cut(s) 134, 302
DpnI GATC 2 cut(s) 183, 314
DpnII GATC 2 cut(s) 181, 312
Eco31I GGTCTC 1 cut(s) 248
Eco57I CTGAAG 1 cut(s) 95
Esp3I CGTCTC 1 cut(s) 193
FaeI CATG 3 cut(s) 122, 133, 181
FaiI YATR 4 cut(s) 120, 127, 131, 179
FaqI GGGAC 1 cut(s) 145
FatI CATG 3 cut(s) 118, 129, 177
FauI CCCGC 1 cut(s) 217
FbaI TGATCA 1 cut(s) 312
FblI GTMKAC 1 cut(s) 126
Fnu4HI GCNGC 2 cut(s) 28, 276
Fsp4HI GCNGC 2 cut(s) 28, 276
GlaI GCGC 1 cut(s) 294
GluI GCNGC 2 cut(s) 28, 276
HaeII RGCGCY 1 cut(s) 296
HapII CCGG 2 cut(s) 37, 279
HgaI GACGC 2 cut(s) 97, 281
HhaI GCGC 1 cut(s) 295
Hin1I GRCGYC 2 cut(s) 108, 273
Hin1II CATG 3 cut(s) 122, 133, 181
Hin6I GCGC 1 cut(s) 293
HinP1I GCGC 1 cut(s) 293
HinfI GANTC 1 cut(s) 266
HpaII CCGG 2 cut(s) 37, 279
Hpy166II GTNNAC 3 cut(s) 49, 127, 172
Hpy188I TCNGA 4 cut(s) 248, 271, 290, 303
Hpy8I GTNNAC 3 cut(s) 49, 127, 172
Hpy99I CGWCG 6 cut(s) 101, 104, 107, 113, 236, 275
HpyAV CCTTC 1 cut(s) 125
HpyF10VI GCNNNNNNNGC 1 cut(s) 33
HpyF3I CTNAG 2 cut(s) 134, 302
Hsp92I GRCGYC 2 cut(s) 108, 273
Hsp92II CATG 3 cut(s) 122, 133, 181
HspAI GCGC 1 cut(s) 293
Ksp22I TGATCA 1 cut(s) 312
Kzo9I GATC 2 cut(s) 181, 312
LmnI GCTCC 1 cut(s) 306
LpnPI CCDG 2 cut(s) 50, 292
Lsp1109I GCAGC 1 cut(s) 39
LweI GCATC 1 cut(s) 147
MalI GATC 2 cut(s) 183, 314
MbiI CCGCTC 1 cut(s) 251
MboI GATC 2 cut(s) 181, 312
MboII GAAGA 5 cut(s) 32, 75, 88, 133, 253
MflI RGATCY 1 cut(s) 181
MlyI GAGTC 1 cut(s) 275
MmeI TCCRAC 1 cut(s) 294
MnlI CCTC 5 cut(s) 7, 204, 214, 230, 297
MspI CCGG 2 cut(s) 37, 279
MwoI GCNNNNNNNGC 1 cut(s) 33
NdeII GATC 2 cut(s) 181, 312
NlaIII CATG 3 cut(s) 122, 133, 181
NspI RCATGY 1 cut(s) 133
PcsI WCGNNNNNNNCGW 3 cut(s) 105, 108, 228
PkrI GCNGC 2 cut(s) 29, 277
PleI GAGTC 1 cut(s) 274
PpsI GAGTC 1 cut(s) 274
PsuI RGATCY 1 cut(s) 181
SatI GCNGC 2 cut(s) 28, 276
Sau3AI GATC 2 cut(s) 181, 312
SchI GAGTC 1 cut(s) 275
SetI ASST 1 cut(s) 18
SfaNI GCATC 1 cut(s) 147
SmlI CTYRAG 1 cut(s) 52
SmoI CTYRAG 1 cut(s) 52
SsiI CCGC 3 cut(s) 210, 251, 276
TaqI TCGA 2 cut(s) 144, 264
TauI GCSGC 1 cut(s) 278
TseI GCWGC 1 cut(s) 27
TspDTI ATGAA 1 cut(s) 107
XceI RCATGY 1 cut(s) 133
XmiI GTMKAC 1 cut(s) 126
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.