Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0000729

Physical Location & Seq

Genomic Coordinates Reverse (-)

17611538 .. 17612046

Gene Structure 509 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ30343

Sequence Viewer

CDS Protein Promoter (2k)

Length: 462 bp

ATGGACACCGTCACCGAGTCCCACATGGCCGTCTCCATGGGCGGCATCGGCATCCTCCACTCCAACGCCGCCTCCTCCGACCAGGCCGCCATGGTCAGATCCGTCAAGGCCCGCCGCGTCCCCTTCCTCTCCACCCCCGTCTTCATGTCCCCAGGAGACCGCATCCACAATAACGACGTTTTCGACCACGGTGCCAATCCCTACGTCCTCGTCACCGAGTCCGGCGCTCCCAGCTCCAAGCTTTTGGGCTACGTGGCGAGCCGCGATTGGGAGAAGCTGGCGGACTTGGAGGTCAAGATTTACGATTACATGATTGAGGAGTTCATGGCGGAGAAAGGCCGTGACGTGGTGGCGACGGTGAGGGACGACGAGGTTGTCGACGTCGTGGGGAAGGAGGACGTGGAGAGGATCAGAGGGTACCCGAAGTTGGGGGTCGGGTCGGTTGGGCCCGACGGGTCGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0003938 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006139 GO:0006163 GO:0006164 GO:0006183 GO:0006725 GO:0006753 GO:0006793 GO:0006796 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009116 GO:0009117 GO:0009119 GO:0009141 GO:0009142 GO:0009144 GO:0009145 GO:0009150 GO:0009152 GO:0009163 GO:0009165 GO:0009199 GO:0009201 GO:0009205 GO:0009206 GO:0009259 GO:0009260 GO:0009719 GO:0009725 GO:0009735 GO:0009987 GO:0010033 GO:0016491 GO:0016614 GO:0016616 GO:0018130 GO:0019438 GO:0019637 GO:0019693 GO:0034404 GO:0034641 GO:0034654 GO:0042221 GO:0042278 GO:0042451 GO:0042455 GO:0044237 GO:0044238 GO:0044249 GO:0044271 GO:0044281 GO:0044283 GO:0044424 GO:0044444 GO:0044464 GO:0046039 GO:0046128 GO:0046129 GO:0046390 GO:0046483 GO:0050896 GO:0055086 GO:0055114 GO:0071704 GO:0072521 GO:0072522 GO:0090407 GO:1901068 GO:1901070 GO:1901135 GO:1901137 GO:1901293 GO:1901360 GO:1901362 GO:1901564 GO:1901566 GO:1901576 GO:1901657 GO:1901659

KEGG Pathways

Metabolic & Signaling

ko00230 ko00983 ko01100 ko01110 map00230 map00983 map01100 map01110

Pfam Domains

Protein Families

IMPDH

Protein Analysis

153

Amino Acids

16.59

Weight (kDa)

4.91

Isoelectric Point (pI)

40.99

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
IMPDH	PF00478	1 - 91	1.8e-08	IMP dehydrogenase / GMP reductase domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000729)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G16350 AT1G79470
fragaria_vesca	FvH4_3g14430 FvH4_3g14430
malus_domestica	MD05G1237000.v1.1 MD05G1237500.v1.1 MD10G1213800.v1.1
prunus_persica	Prupe.4G129200_v2.0.a1 Prupe.4G129200_v2.0.a1
pyrus_communis	pycom05g21380 pycom10g18050 pycom10g18080 pycom10g18140 pycom10g18190
rosa_chinensis	RchiOBHm_Chr1g0350061 RchiOBHm_Chr2g0101951 RchiOBHm_Chr2g0155871 RchiOBHm_Chr3g0468611 RchiOBHm_Chr3g0493461 RchiOBHm_Chr4g0401281 RchiOBHm_Chr4g0402021 RchiOBHm_Chr5g0023561 RchiOBHm_Chr5g0023571 RchiOBHm_Chr5g0023741 RchiOBHm_Chr7g0231801 RchiOBHm_Chr7g0234111 RchiOBHm_Chr7g0238791 RchiOBHm_Chr7g0239601
rosa_laevigata	RLG00000032733
rosa_multiflora	Rmu_co8005014.1_g000001 Rmu_co8223904.1_g000001 Rmu_sc0000087.1_g000007 Rmu_sc0000110.1_g000028 Rmu_sc0000172.1_g000003 Rmu_sc0000689.1_g000019 Rmu_sc0000870.1_g000014 Rmu_sc0001372.1_g000011 Rmu_sc0001516.1_g000086 Rmu_sc0001653.1_g000008 Rmu_sc0002862.1_g000001 Rmu_sc0002862.1_g000002 Rmu_sc0008652.1_g000002 Rmu_sc0011789.1_g000002 Rmu_sc0013252.1_g000001 Rmu_sc0017256.1_g000001 Rmu_sc0017907.1_g000002 Rmu_sc0017907.1_g000003 Rmu_sc0018737.1_g000003 Rmu_sc0020536.1_g000001 Rmu_sc0025127.1_g000001 Rmu_sc0028608.1_g000001 Rmu_sc0029703.1_g000001 Rmu_ssc0000027.1_g000015
rosa_roxburghii	Rroxscaffold_1G00055450
rosa_rugosa	Rorug03G0326300 Rorug05G0079400 Rorug05G0352300
rosa_samantha	Rh5AG167200 Rh5AG169300 Rh5BG166700 Rh5CG181100 Rh5CG182300 Rh5DG168600 Rh6BG409700
rosa_wichuraiana	Rw0G001580 Rw0G004990 Rw1G017410 Rw2G027840 Rw4G002740 Rw5G015190 Rw5G015310 Rw7G033830

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	2 cut(s)	290, 374
AatII	GACGTC	1 cut(s)	384
Acc65I	GGTACC	1 cut(s)	417
AccB1I	GGYRCC	2 cut(s)	191, 417
AccI	GTMKAC	1 cut(s)	378
AccII	CGCG	2 cut(s)	117, 264
AciI	CCGC	9 cut(s)	42, 69, 87, 112, 115, 160, 262, 281, 329
AclWI	GGATC	2 cut(s)	93, 416
AcoI	YGGCCR	1 cut(s)	27
AcyI	GRCGYC	1 cut(s)	381
AfaI	GTAC	1 cut(s)	419
AfiI	CCNNNNNNNGG	4 cut(s)	268, 346, 427, 428
AjiI	CACGTC	2 cut(s)	346, 400
AjnI	CCWGG	2 cut(s)	81, 151
AluBI	AGCT	3 cut(s)	234, 241, 277
AluI	AGCT	3 cut(s)	234, 241, 277
Alw26I	GTCTC	2 cut(s)	37, 150
AlwI	GGATC	2 cut(s)	93, 416
AoxI	GGCC	5 cut(s)	27, 84, 108, 337, 446
ApaI	GGGCCC	1 cut(s)	450
Asp718I	GGTACC	1 cut(s)	417
AspLEI	GCGC	1 cut(s)	227
AspS9I	GGNCC	3 cut(s)	109, 446, 447
AsuHPI	GGTGA	3 cut(s)	4, 205, 370
BaeGI	GKGCMC	1 cut(s)	450
BanI	GGYRCC	2 cut(s)	191, 417
BanII	GRGCYC	1 cut(s)	450
BbsI	GAAGAC	1 cut(s)	133
BceAI	ACGGC	2 cut(s)	14, 324
BcgI	CGANNNNNNTGC	2 cut(s)	173, 207
BciT130I	CCWGG	2 cut(s)	83, 153
BcoDI	GTCTC	2 cut(s)	37, 150
BfoI	RGCGCY	1 cut(s)	228
BisI	GCNGC	5 cut(s)	43, 69, 87, 115, 262
BlsI	GCNGC	5 cut(s)	44, 70, 88, 116, 263
Bme1390I	CCNGG	2 cut(s)	83, 153
BmgBI	CACGTC	2 cut(s)	346, 400
BmgT120I	GGNCC	3 cut(s)	109, 446, 447
BmiI	GGNNCC	3 cut(s)	193, 419, 448
BmrFI	CCNGG	2 cut(s)	83, 153
BmsI	GCATC	3 cut(s)	54, 60, 171
BpiI	GAAGAC	1 cut(s)	133
BsaAI	YACGTR	1 cut(s)	253
BsaHI	GRCGYC	1 cut(s)	381
BsaI	GGTCTC	1 cut(s)	150
BsaJI	CCNNGG	4 cut(s)	36, 90, 151, 187
BsaXI	ACNNNNNCTCC	2 cut(s)	56, 86
Bsc4I	CCNNNNNNNGG	4 cut(s)	268, 346, 427, 428
BseBI	CCWGG	2 cut(s)	83, 153
BseDI	CCNNGG	4 cut(s)	36, 90, 151, 187
BseGI	GGATG	2 cut(s)	51, 162
BseLI	CCNNNNNNNGG	4 cut(s)	268, 346, 427, 428
BseRI	GAGGAG	2 cut(s)	64, 332
BseSI	GKGCMC	1 cut(s)	450
BseYI	CCCAGC	1 cut(s)	230
Bsh1236I	CGCG	2 cut(s)	117, 264
BshFI	GGCC	5 cut(s)	29, 86, 110, 339, 448
BshNI	GGYRCC	2 cut(s)	191, 417
BsiSI	CCGG	1 cut(s)	222
BslFI	GGGAC	4 cut(s)	4, 104, 133, 377
BslI	CCNNNNNNNGG	4 cut(s)	268, 346, 427, 428
BsmAI	GTCTC	2 cut(s)	37, 150
BsmBI	CGTCTC	1 cut(s)	37
BsmFI	GGGAC	4 cut(s)	4, 104, 133, 377
BsnI	GGCC	5 cut(s)	29, 86, 110, 339, 448
Bso31I	GGTCTC	1 cut(s)	150
Bsp120I	GGGCCC	1 cut(s)	446
Bsp1286I	GDGCHC	1 cut(s)	450
Bsp143I	GATC	2 cut(s)	98, 408
Bsp19I	CCATGG	2 cut(s)	36, 90
BspACI	CCGC	9 cut(s)	42, 69, 87, 112, 115, 160, 262, 281, 329
BspANI	GGCC	5 cut(s)	29, 86, 110, 339, 448
BspFNI	CGCG	2 cut(s)	117, 264
BspLI	GGNNCC	3 cut(s)	193, 419, 448
BspPI	GGATC	2 cut(s)	93, 416
BspT107I	GGYRCC	2 cut(s)	191, 417
BspTNI	GGTCTC	1 cut(s)	150
BssECI	CCNNGG	4 cut(s)	36, 90, 151, 187
BssMI	GATC	2 cut(s)	98, 408
BssNI	GRCGYC	1 cut(s)	381
BssT1I	CCWWGG	2 cut(s)	36, 90
Bst2UI	CCWGG	2 cut(s)	83, 153
Bst4CI	ACNGT	3 cut(s)	10, 191, 358
BstACI	GRCGYC	1 cut(s)	381
BstBAI	YACGTR	1 cut(s)	253
BstC8I	GCNNGC	3 cut(s)	112, 259, 279
BstDSI	CCRYGG	3 cut(s)	36, 90, 187
BstF5I	GGATG	2 cut(s)	51, 162
BstFNI	CGCG	2 cut(s)	117, 264
BstH2I	RGCGCY	1 cut(s)	228
BstHHI	GCGC	1 cut(s)	227
BstKTI	GATC	2 cut(s)	101, 411
BstMAI	GTCTC	2 cut(s)	37, 150
BstMBI	GATC	2 cut(s)	98, 408
BstMWI	GCNNNNNNNGC	2 cut(s)	48, 231
BstNI	CCWGG	2 cut(s)	83, 153
BstSCI	CCNGG	2 cut(s)	81, 151
BstSLI	GKGCMC	1 cut(s)	450
BstUI	CGCG	2 cut(s)	117, 264
BstV2I	GAAGAC	1 cut(s)	133
BstX2I	RGATCY	1 cut(s)	98
BstXI	CCANNNNNNTGG	1 cut(s)	244
BstYI	RGATCY	1 cut(s)	98
BsuRI	GGCC	5 cut(s)	29, 86, 110, 339, 448
BtgI	CCRYGG	3 cut(s)	36, 90, 187
BtrI	CACGTC	2 cut(s)	346, 400
BtsCI	GGATG	2 cut(s)	51, 162
Cac8I	GCNNGC	3 cut(s)	112, 259, 279
CfoI	GCGC	1 cut(s)	227
Cfr13I	GGNCC	3 cut(s)	109, 446, 447
CseI	GACGC	1 cut(s)	106
Csp6I	GTAC	1 cut(s)	418
CviAII	CATG	6 cut(s)	25, 37, 91, 145, 310, 325
CviQI	GTAC	1 cut(s)	418
DpnI	GATC	2 cut(s)	100, 410
DpnII	GATC	2 cut(s)	98, 408
DrdI	GACNNNNNNGTC	2 cut(s)	290, 374
DseDI	GACNNNNNNGTC	2 cut(s)	290, 374
EaeI	YGGCCR	1 cut(s)	27
EciI	GGCGGA	2 cut(s)	296, 344
Eco130I	CCWWGG	2 cut(s)	36, 90
Eco24I	GRGCYC	1 cut(s)	450
Eco31I	GGTCTC	1 cut(s)	150
EcoRII	CCWGG	2 cut(s)	81, 151
EcoT14I	CCWWGG	2 cut(s)	36, 90
EcoT38I	GRGCYC	1 cut(s)	450
ErhI	CCWWGG	2 cut(s)	36, 90
Esp3I	CGTCTC	1 cut(s)	37
FaeI	CATG	6 cut(s)	28, 40, 94, 148, 313, 328
FaiI	YATR	6 cut(s)	26, 38, 92, 146, 311, 326
FaqI	GGGAC	4 cut(s)	4, 104, 133, 377
FatI	CATG	6 cut(s)	24, 36, 90, 144, 309, 324
FauI	CCCGC	1 cut(s)	119
FblI	GTMKAC	1 cut(s)	378
Fnu4HI	GCNGC	5 cut(s)	43, 69, 87, 115, 262
FokI	GGATG	2 cut(s)	38, 149
FriOI	GRGCYC	1 cut(s)	450
Fsp4HI	GCNGC	5 cut(s)	43, 69, 87, 115, 262
GlaI	GCGC	1 cut(s)	226
GluI	GCNGC	5 cut(s)	43, 69, 87, 115, 262
GsaI	CCCAGC	1 cut(s)	234
HaeII	RGCGCY	1 cut(s)	228
HaeIII	GGCC	5 cut(s)	29, 86, 110, 339, 448
HapII	CCGG	1 cut(s)	222
HgaI	GACGC	1 cut(s)	106
HhaI	GCGC	1 cut(s)	227
Hin1I	GRCGYC	1 cut(s)	381
Hin1II	CATG	6 cut(s)	28, 40, 94, 148, 313, 328
Hin6I	GCGC	1 cut(s)	225
HinP1I	GCGC	1 cut(s)	225
HincII	GTYRAC	1 cut(s)	379
HindII	GTYRAC	1 cut(s)	379
HindIII	AAGCTT	1 cut(s)	239
HinfI	GANTC	2 cut(s)	17, 218
HpaII	CCGG	1 cut(s)	222
HphI	GGTGA	3 cut(s)	4, 205, 370
Hpy166II	GTNNAC	1 cut(s)	379
Hpy188I	TCNGA	3 cut(s)	79, 98, 413
Hpy188III	TCNNGA	2 cut(s)	295, 459
Hpy8I	GTNNAC	1 cut(s)	379
Hpy99I	CGWCG	6 cut(s)	179, 358, 371, 383, 386, 455
HpyAV	CCTTC	2 cut(s)	133, 385
HpyCH4III	ACNGT	3 cut(s)	10, 191, 358
HpyCH4IV	ACGT	6 cut(s)	177, 204, 252, 345, 381, 399
HpyF10VI	GCNNNNNNNGC	2 cut(s)	48, 231
HpySE526I	ACGT	6 cut(s)	177, 204, 252, 345, 381, 399
Hsp92I	GRCGYC	1 cut(s)	381
Hsp92II	CATG	6 cut(s)	28, 40, 94, 148, 313, 328
HspAI	GCGC	1 cut(s)	225
KpnI	GGTACC	1 cut(s)	421
Kzo9I	GATC	2 cut(s)	98, 408
LmnI	GCTCC	2 cut(s)	232, 239
LpnPI	CCDG	7 cut(s)	68, 95, 138, 165, 235, 244, 263
LweI	GCATC	3 cut(s)	54, 60, 171
MaeII	ACGT	6 cut(s)	177, 204, 252, 345, 381, 399
MaeIII	GTNAC	3 cut(s)	10, 211, 341
MalI	GATC	2 cut(s)	100, 410
MboI	GATC	2 cut(s)	98, 408
MboII	GAAGA	1 cut(s)	133
MflI	RGATCY	1 cut(s)	98
MhlI	GDGCHC	1 cut(s)	450
MlyI	GAGTC	2 cut(s)	26, 227
MmeI	TCCRAC	2 cut(s)	87, 102
MspI	CCGG	1 cut(s)	222
MspR9I	CCNGG	2 cut(s)	83, 153
MvaI	CCWGG	2 cut(s)	83, 153
MvnI	CGCG	2 cut(s)	117, 264
MwoI	GCNNNNNNNGC	2 cut(s)	48, 231
NcoI	CCATGG	2 cut(s)	36, 90
NdeII	GATC	2 cut(s)	98, 408
NlaIII	CATG	6 cut(s)	28, 40, 94, 148, 313, 328
NlaIV	GGNNCC	3 cut(s)	193, 419, 448
NmuCI	GTSAC	3 cut(s)	10, 211, 341
PcsI	WCGNNNNNNNCGW	2 cut(s)	180, 375
PflFI	GACNNNGTC	1 cut(s)	8
PkrI	GCNGC	5 cut(s)	44, 70, 88, 116, 263
PleI	GAGTC	2 cut(s)	25, 226
PpsI	GAGTC	2 cut(s)	25, 226
Ppu21I	YACGTR	1 cut(s)	253
Psp6I	CCWGG	2 cut(s)	81, 151
PspFI	CCCAGC	1 cut(s)	230
PspGI	CCWGG	2 cut(s)	81, 151
PspN4I	GGNNCC	3 cut(s)	193, 419, 448
PspOMI	GGGCCC	1 cut(s)	446
PspPI	GGNCC	3 cut(s)	109, 446, 447
PsuI	RGATCY	1 cut(s)	98
PsyI	GACNNNGTC	1 cut(s)	8
RsaI	GTAC	1 cut(s)	419
RsaNI	GTAC	1 cut(s)	418
SalI	GTCGAC	1 cut(s)	377
SatI	GCNGC	5 cut(s)	43, 69, 87, 115, 262
Sau3AI	GATC	2 cut(s)	98, 408
Sau96I	GGNCC	3 cut(s)	109, 446, 447
SchI	GAGTC	2 cut(s)	26, 227
ScrFI	CCNGG	2 cut(s)	83, 153
SduI	GDGCHC	1 cut(s)	450
SfaNI	GCATC	3 cut(s)	54, 60, 171
SsiI	CCGC	9 cut(s)	42, 69, 87, 112, 115, 160, 262, 281, 329
StyD4I	CCNGG	2 cut(s)	81, 151
StyI	CCWWGG	2 cut(s)	36, 90
TaaI	ACNGT	3 cut(s)	10, 191, 358
TaiI	ACGT	6 cut(s)	180, 207, 255, 348, 384, 402
TaqI	TCGA	2 cut(s)	183, 378
TauI	GCSGC	5 cut(s)	45, 71, 89, 117, 264
TseFI	GTSAC	3 cut(s)	10, 211, 341
Tsp45I	GTSAC	3 cut(s)	10, 211, 341
TspDTI	ATGAA	2 cut(s)	133, 313
TspGWI	ACGGA	1 cut(s)	91
Tth111I	GACNNNGTC	1 cut(s)	8
XmiI	GTMKAC	1 cut(s)	378
ZraI	GACGTC	1 cut(s)	382

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.