RchiOBHm_Chr2g0155871

Catalyzes the conversion of inosine 5'-phosphate (IMP) to xanthosine 5'-phosphate (XMP), the first committed and rate- limiting step in the de novo synthesis of guanine nucleotides, and therefore plays an important role in the regulation of cell growth

Basic Information

Type: gene
Biological Identity
rosa_chinensis
2
Physical Location & Seq
Forward (+)
72732704 .. 72733264
561 bp
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UTR
Exon/CDS
Intron
PRQ52474

Sequence Viewer

Length: 561 bp
ATGGCGAGCCACGATTGGGTGAAGCTAGCGGACAAGGAGGTCAAGATTTACGATTACATGATCAGCTGTAAGGACATGGTTTTGCCTTGGAGCTCCGATTTGGGGAAGATTGAGGAGTTCATGGCGGAGAAAGGCCGTGACGTGGCAGCAACGGTGAGGGACGACGAGGTTGTCGATGTTGTGGAGAAGGAGGACGTGGAGCGGATCAAGGGGTACCCGAAGTTGGGGGTCGGGTCGGTTGGGCCCGACGGGTCGTGGAAGGTCGGGGCGGCGATAAGGATGAGGGAGTCGGATAAGGAGAGATTAGAGGAGTTGGTGAAGGCTGGGATTGATGTGGTGGTGTTGGATAGCTCACAGGGGAACTCCATTTATCAGATTGAGTTGATCAAGTACATCAAGAAAATGTACTCAGATTTGGATGTGGTTTGTGGGAATGTGTTGACTGTGAGTCAGGCGCAGAATTTGATTCAGGCTGGTGTTGATGGGTTGAGGGTTGGGATGGGGTCCGGCTCCATTTGTACTACTCAAGAGGTTTGCGTCGGCGGCAGGGGACAGGTATAA

Protein Analysis

186

Amino Acids

20.35

Weight (kDa)

4.79

Isoelectric Point (pI)

25.22

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
IMPDH PF00478 64 - 186 2e-34 IMP dehydrogenase / GMP reductase domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000729)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G16350 AT1G79470
fragaria_vesca FvH4_3g14430 FvH4_3g14430
malus_domestica MD05G1237000.v1.1 MD05G1237500.v1.1 MD10G1213800.v1.1
prunus_persica Prupe.4G129200_v2.0.a1 Prupe.4G129200_v2.0.a1
pyrus_communis pycom05g21380 pycom10g18050 pycom10g18080 pycom10g18140 pycom10g18190
rosa_chinensis RchiOBHm_Chr1g0350061 RchiOBHm_Chr2g0101951 RchiOBHm_Chr2g0155871 RchiOBHm_Chr3g0468611 RchiOBHm_Chr3g0493461 RchiOBHm_Chr4g0401281 RchiOBHm_Chr4g0402021 RchiOBHm_Chr5g0023561 RchiOBHm_Chr5g0023571 RchiOBHm_Chr5g0023741 RchiOBHm_Chr7g0231801 RchiOBHm_Chr7g0234111 RchiOBHm_Chr7g0238791 RchiOBHm_Chr7g0239601
rosa_laevigata RLG00000032733
rosa_multiflora Rmu_co8005014.1_g000001 Rmu_co8223904.1_g000001 Rmu_sc0000087.1_g000007 Rmu_sc0000110.1_g000028 Rmu_sc0000172.1_g000003 Rmu_sc0000689.1_g000019 Rmu_sc0000870.1_g000014 Rmu_sc0001372.1_g000011 Rmu_sc0001516.1_g000086 Rmu_sc0001653.1_g000008 Rmu_sc0002862.1_g000001 Rmu_sc0002862.1_g000002 Rmu_sc0008652.1_g000002 Rmu_sc0011789.1_g000002 Rmu_sc0013252.1_g000001 Rmu_sc0017256.1_g000001 Rmu_sc0017907.1_g000002 Rmu_sc0017907.1_g000003 Rmu_sc0018737.1_g000003 Rmu_sc0020536.1_g000001 Rmu_sc0025127.1_g000001 Rmu_sc0028608.1_g000001 Rmu_sc0029703.1_g000001 Rmu_ssc0000027.1_g000015
rosa_roxburghii Rroxscaffold_1G00055450
rosa_rugosa Rorug03G0326300 Rorug05G0079400 Rorug05G0352300
rosa_samantha Rh5AG167200 Rh5AG169300 Rh5BG166700 Rh5CG181100 Rh5CG182300 Rh5DG168600 Rh6BG409700
rosa_wichuraiana Rw0G001580 Rw0G004990 Rw1G017410 Rw2G027840 Rw4G002740 Rw5G015190 Rw5G015310 Rw7G033830

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 2 cut(s) 38, 170
Acc65I GGTACC 1 cut(s) 213
AccB1I GGYRCC 1 cut(s) 213
AccBSI CCGCTC 1 cut(s) 202
AciI CCGC 5 cut(s) 29, 125, 202, 269, 543
AclWI GGATC 1 cut(s) 212
AcsI RAATTY 1 cut(s) 460
AfaI GTAC 4 cut(s) 215, 392, 407, 520
AfiI CCNNNNNNNGG 5 cut(s) 16, 102, 142, 223, 224
AhdI GACNNNNNGTC 1 cut(s) 447
AjiI CACGTC 2 cut(s) 142, 196
AluBI AGCT 4 cut(s) 25, 66, 93, 351
AluI AGCT 4 cut(s) 25, 66, 93, 351
Alw21I GWGCWC 1 cut(s) 95
AlwI GGATC 1 cut(s) 212
AoxI GGCC 2 cut(s) 133, 242
ApaI GGGCCC 1 cut(s) 246
ApeKI GCWGC 1 cut(s) 146
ApoI RAATTY 1 cut(s) 460
Asp718I GGTACC 1 cut(s) 213
AspLEI GCGC 1 cut(s) 457
AspS9I GGNCC 3 cut(s) 242, 243, 504
AsuHPI GGTGA 3 cut(s) 31, 166, 328
AsuNHI GCTAGC 1 cut(s) 25
AvaII GGWCC 1 cut(s) 504
BaeGI GKGCMC 1 cut(s) 246
BanI GGYRCC 1 cut(s) 213
BanII GRGCYC 2 cut(s) 95, 246
Bbv12I GWGCWC 1 cut(s) 95
BbvI GCAGC 1 cut(s) 158
BccI CCATC 2 cut(s) 476, 493
BceAI ACGGC 1 cut(s) 120
BclI TGATCA 2 cut(s) 60, 384
BfaI CTAG 1 cut(s) 26
BisI GCNGC 3 cut(s) 147, 270, 544
BlsI GCNGC 3 cut(s) 148, 271, 545
Bme18I GGWCC 1 cut(s) 504
BmeRI GACNNNNNGTC 1 cut(s) 447
BmgBI CACGTC 2 cut(s) 142, 196
BmgT120I GGNCC 3 cut(s) 242, 243, 504
BmiI GGNNCC 4 cut(s) 215, 244, 505, 511
BmtI GCTAGC 1 cut(s) 29
BpuEI CTTGAG 1 cut(s) 510
BsaJI CCNNGG 1 cut(s) 86
Bsc4I CCNNNNNNNGG 5 cut(s) 16, 102, 142, 223, 224
BseDI CCNNGG 1 cut(s) 86
BseGI GGATG 3 cut(s) 285, 424, 504
BseLI CCNNNNNNNGG 5 cut(s) 16, 102, 142, 223, 224
BseMII CTCAG 1 cut(s) 423
BseRI GAGGAG 2 cut(s) 128, 323
BseSI GKGCMC 1 cut(s) 246
BseXI GCAGC 1 cut(s) 158
BseYI CCCAGC 1 cut(s) 323
BshFI GGCC 2 cut(s) 135, 244
BshNI GGYRCC 1 cut(s) 213
BsiHKAI GWGCWC 1 cut(s) 95
BsiSI CCGG 1 cut(s) 507
BslFI GGGAC 1 cut(s) 173
BslI CCNNNNNNNGG 5 cut(s) 16, 102, 142, 223, 224
BsmFI GGGAC 1 cut(s) 173
BsnI GGCC 2 cut(s) 135, 244
Bsp120I GGGCCC 1 cut(s) 242
Bsp1286I GDGCHC 2 cut(s) 95, 246
Bsp143I GATC 3 cut(s) 60, 204, 384
BspACI CCGC 5 cut(s) 29, 125, 202, 269, 543
BspANI GGCC 2 cut(s) 135, 244
BspCNI CTCAG 1 cut(s) 422
BspLI GGNNCC 4 cut(s) 215, 244, 505, 511
BspOI GCTAGC 1 cut(s) 29
BspPI GGATC 1 cut(s) 212
BspT107I GGYRCC 1 cut(s) 213
BsrBI CCGCTC 1 cut(s) 202
BssECI CCNNGG 1 cut(s) 86
BssMI GATC 3 cut(s) 60, 204, 384
BssT1I CCWWGG 1 cut(s) 86
Bst4CI ACNGT 2 cut(s) 154, 445
BstC8I GCNNGC 2 cut(s) 7, 27
BstDEI CTNAG 1 cut(s) 409
BstF5I GGATG 3 cut(s) 285, 424, 504
BstHHI GCGC 1 cut(s) 457
BstKTI GATC 3 cut(s) 63, 207, 387
BstMBI GATC 3 cut(s) 60, 204, 384
BstMWI GCNNNNNNNGC 1 cut(s) 543
BstSLI GKGCMC 1 cut(s) 246
BstV1I GCAGC 1 cut(s) 158
BsuRI GGCC 2 cut(s) 135, 244
BtrI CACGTC 2 cut(s) 142, 196
BtsCI GGATG 3 cut(s) 285, 424, 504
Cac8I GCNNGC 2 cut(s) 7, 27
CfoI GCGC 1 cut(s) 457
Cfr13I GGNCC 3 cut(s) 242, 243, 504
CseI GACGC 1 cut(s) 526
Csp6I GTAC 4 cut(s) 214, 391, 406, 519
CviAII CATG 3 cut(s) 58, 76, 121
CviQI GTAC 4 cut(s) 214, 391, 406, 519
DdeI CTNAG 1 cut(s) 409
DpnI GATC 3 cut(s) 62, 206, 386
DpnII GATC 3 cut(s) 60, 204, 384
DrdI GACNNNNNNGTC 2 cut(s) 38, 170
DriI GACNNNNNGTC 1 cut(s) 447
DseDI GACNNNNNNGTC 2 cut(s) 38, 170
Eam1105I GACNNNNNGTC 1 cut(s) 447
EciI GGCGGA 1 cut(s) 140
Ecl136II GAGCTC 1 cut(s) 93
Eco130I CCWWGG 1 cut(s) 86
Eco24I GRGCYC 2 cut(s) 95, 246
Eco47I GGWCC 1 cut(s) 504
Eco53kI GAGCTC 1 cut(s) 93
EcoICRI GAGCTC 1 cut(s) 93
EcoT14I CCWWGG 1 cut(s) 86
EcoT38I GRGCYC 2 cut(s) 95, 246
ErhI CCWWGG 1 cut(s) 86
FaeI CATG 3 cut(s) 61, 79, 124
FaiI YATR 4 cut(s) 59, 77, 122, 559
FaqI GGGAC 1 cut(s) 173
FatI CATG 3 cut(s) 57, 75, 120
FbaI TGATCA 2 cut(s) 60, 384
Fnu4HI GCNGC 3 cut(s) 147, 270, 544
FokI GGATG 3 cut(s) 292, 431, 511
FriOI GRGCYC 2 cut(s) 95, 246
Fsp4HI GCNGC 3 cut(s) 147, 270, 544
FspBI CTAG 1 cut(s) 26
GlaI GCGC 1 cut(s) 456
GluI GCNGC 3 cut(s) 147, 270, 544
GsaI CCCAGC 1 cut(s) 327
HaeIII GGCC 2 cut(s) 135, 244
HapII CCGG 1 cut(s) 507
HgaI GACGC 1 cut(s) 526
HhaI GCGC 1 cut(s) 457
Hin1II CATG 3 cut(s) 61, 79, 124
Hin6I GCGC 1 cut(s) 455
HinP1I GCGC 1 cut(s) 455
HincII GTYRAC 1 cut(s) 441
HindII GTYRAC 1 cut(s) 441
HinfI GANTC 3 cut(s) 287, 448, 466
HpaII CCGG 1 cut(s) 507
HphI GGTGA 3 cut(s) 31, 166, 328
Hpy166II GTNNAC 1 cut(s) 441
Hpy188I TCNGA 4 cut(s) 97, 292, 375, 412
Hpy188III TCNNGA 3 cut(s) 43, 397, 527
Hpy8I GTNNAC 1 cut(s) 441
Hpy99I CGWCG 3 cut(s) 167, 251, 542
HpyAV CCTTC 3 cut(s) 181, 253, 313
HpyCH4III ACNGT 2 cut(s) 154, 445
HpyCH4IV ACGT 2 cut(s) 141, 195
HpyF10VI GCNNNNNNNGC 1 cut(s) 543
HpyF3I CTNAG 1 cut(s) 409
HpySE526I ACGT 2 cut(s) 141, 195
Hsp92II CATG 3 cut(s) 61, 79, 124
HspAI GCGC 1 cut(s) 455
KpnI GGTACC 1 cut(s) 217
Ksp22I TGATCA 2 cut(s) 60, 384
Kzo9I GATC 3 cut(s) 60, 204, 384
LmnI GCTCC 4 cut(s) 90, 98, 199, 515
LpnPI CCDG 8 cut(s) 309, 341, 437, 455, 459, 520, 532, 539
Lsp1109I GCAGC 1 cut(s) 158
MaeI CTAG 1 cut(s) 26
MaeII ACGT 2 cut(s) 141, 195
MaeIII GTNAC 1 cut(s) 137
MalI GATC 3 cut(s) 62, 206, 386
MbiI CCGCTC 1 cut(s) 202
MboI GATC 3 cut(s) 60, 204, 384
MboII GAAGA 1 cut(s) 118
MhlI GDGCHC 2 cut(s) 95, 246
MluCI AATT 1 cut(s) 460
MlyI GAGTC 2 cut(s) 296, 457
MmeI TCCRAC 2 cut(s) 270, 324
MnlI CCTC 9 cut(s) 31, 106, 150, 160, 184, 276, 301, 483, 523
MspA1I CMGCKG 1 cut(s) 66
MspI CCGG 1 cut(s) 507
MwoI GCNNNNNNNGC 1 cut(s) 543
NdeII GATC 3 cut(s) 60, 204, 384
NheI GCTAGC 1 cut(s) 25
NlaIII CATG 3 cut(s) 61, 79, 124
NlaIV GGNNCC 4 cut(s) 215, 244, 505, 511
NmuCI GTSAC 1 cut(s) 137
PcsI WCGNNNNNNNCGW 1 cut(s) 171
PfeI GAWTC 1 cut(s) 466
PkrI GCNGC 3 cut(s) 148, 271, 545
PleI GAGTC 2 cut(s) 295, 456
PpsI GAGTC 2 cut(s) 295, 456
Psp124BI GAGCTC 1 cut(s) 95
PspFI CCCAGC 1 cut(s) 323
PspN4I GGNNCC 4 cut(s) 215, 244, 505, 511
PspOMI GGGCCC 1 cut(s) 242
PspPI GGNCC 3 cut(s) 242, 243, 504
PvuII CAGCTG 1 cut(s) 66
RsaI GTAC 4 cut(s) 215, 392, 407, 520
RsaNI GTAC 4 cut(s) 214, 391, 406, 519
SacI GAGCTC 1 cut(s) 95
SatI GCNGC 3 cut(s) 147, 270, 544
Sau3AI GATC 3 cut(s) 60, 204, 384
Sau96I GGNCC 3 cut(s) 242, 243, 504
SchI GAGTC 2 cut(s) 296, 457
SduI GDGCHC 2 cut(s) 95, 246
SinI GGWCC 1 cut(s) 504
SmlI CTYRAG 1 cut(s) 525
SmoI CTYRAG 1 cut(s) 525
Sse9I AATT 1 cut(s) 460
SsiI CCGC 5 cut(s) 29, 125, 202, 269, 543
SspMI CTAG 1 cut(s) 26
SstI GAGCTC 1 cut(s) 95
StyI CCWWGG 1 cut(s) 86
TaaI ACNGT 2 cut(s) 154, 445
TaiI ACGT 2 cut(s) 144, 198
TaqI TCGA 1 cut(s) 174
TasI AATT 1 cut(s) 460
TatI WGTACW 3 cut(s) 390, 405, 518
TauI GCSGC 2 cut(s) 272, 546
TfiI GAWTC 1 cut(s) 466
TseFI GTSAC 1 cut(s) 137
TseI GCWGC 1 cut(s) 146
Tsp45I GTSAC 1 cut(s) 137
TspDTI ATGAA 1 cut(s) 109
VpaK11BI GGWCC 1 cut(s) 504
XapI RAATTY 1 cut(s) 460
XspI CTAG 1 cut(s) 26
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.