Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0000087.1

Orthogroup ID

OG0000729

Physical Location & Seq

Genomic Coordinates Forward (+)

30903 .. 31325

Gene Structure 423 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0000087.1_g000007.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 423 bp

atgtcccgcggagaccgtatccacaacaacgacgttttcgaccacggcgccaatccctacgtcctcgtcaccgagtccggcgcccccagctccaagcttttgggctacatggcgagccgcgattgggtgaagctggcgaacaaggaggtcaagatttacgattacatggttagctgtaaggacatggttttgccttggagctccgatttggggaagattgaggagttcatggcggataaaggccgggacgtggcggcgacggtgagggacgacgaggttgtcgacgttgtggggaaggaggacgtggagtccatcaatgaggtagacctcagattctttcgtttcttcatgaatttggtgtgggtcttttctaaattgggtttaattacttctttgaagcattggaatttagggatttattga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0003938 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006139 GO:0006163 GO:0006164 GO:0006183 GO:0006725 GO:0006753 GO:0006793 GO:0006796 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009116 GO:0009117 GO:0009119 GO:0009141 GO:0009142 GO:0009144 GO:0009145 GO:0009150 GO:0009152 GO:0009163 GO:0009165 GO:0009199 GO:0009201 GO:0009205 GO:0009206 GO:0009259 GO:0009260 GO:0009719 GO:0009725 GO:0009735 GO:0009987 GO:0010033 GO:0016491 GO:0016614 GO:0016616 GO:0018130 GO:0019438 GO:0019637 GO:0019693 GO:0034404 GO:0034641 GO:0034654 GO:0042221 GO:0042278 GO:0042451 GO:0042455 GO:0044237 GO:0044238 GO:0044249 GO:0044271 GO:0044281 GO:0044283 GO:0044424 GO:0044444 GO:0044464 GO:0046039 GO:0046128 GO:0046129 GO:0046390 GO:0046483 GO:0050896 GO:0055086 GO:0055114 GO:0071704 GO:0072521 GO:0072522 GO:0090407 GO:1901068 GO:1901070 GO:1901135 GO:1901137 GO:1901293 GO:1901360 GO:1901362 GO:1901564 GO:1901566 GO:1901576 GO:1901657 GO:1901659

KEGG Pathways

Metabolic & Signaling

ko00230 ko00983 ko01100 ko01110 map00230 map00983 map01100 map01110

Pfam Domains

Protein Families

IMPDH

Protein Analysis

140

Amino Acids

16.01

Weight (kDa)

5.15

Isoelectric Point (pI)

36.55

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000729)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G16350 AT1G79470
fragaria_vesca	FvH4_3g14430 FvH4_3g14430
malus_domestica	MD05G1237000.v1.1 MD05G1237500.v1.1 MD10G1213800.v1.1
prunus_persica	Prupe.4G129200_v2.0.a1 Prupe.4G129200_v2.0.a1
pyrus_communis	pycom05g21380 pycom10g18050 pycom10g18080 pycom10g18140 pycom10g18190
rosa_chinensis	RchiOBHm_Chr1g0350061 RchiOBHm_Chr2g0101951 RchiOBHm_Chr2g0155871 RchiOBHm_Chr3g0468611 RchiOBHm_Chr3g0493461 RchiOBHm_Chr4g0401281 RchiOBHm_Chr4g0402021 RchiOBHm_Chr5g0023561 RchiOBHm_Chr5g0023571 RchiOBHm_Chr5g0023741 RchiOBHm_Chr7g0231801 RchiOBHm_Chr7g0234111 RchiOBHm_Chr7g0238791 RchiOBHm_Chr7g0239601
rosa_laevigata	RLG00000032733
rosa_multiflora	Rmu_co8005014.1_g000001 Rmu_co8223904.1_g000001 Rmu_sc0000087.1_g000007 Rmu_sc0000110.1_g000028 Rmu_sc0000172.1_g000003 Rmu_sc0000689.1_g000019 Rmu_sc0000870.1_g000014 Rmu_sc0001372.1_g000011 Rmu_sc0001516.1_g000086 Rmu_sc0001653.1_g000008 Rmu_sc0002862.1_g000001 Rmu_sc0002862.1_g000002 Rmu_sc0008652.1_g000002 Rmu_sc0011789.1_g000002 Rmu_sc0013252.1_g000001 Rmu_sc0017256.1_g000001 Rmu_sc0017907.1_g000002 Rmu_sc0017907.1_g000003 Rmu_sc0018737.1_g000003 Rmu_sc0020536.1_g000001 Rmu_sc0025127.1_g000001 Rmu_sc0028608.1_g000001 Rmu_sc0029703.1_g000001 Rmu_ssc0000027.1_g000015
rosa_roxburghii	Rroxscaffold_1G00055450
rosa_rugosa	Rorug03G0326300 Rorug05G0079400 Rorug05G0352300
rosa_samantha	Rh5AG167200 Rh5AG169300 Rh5BG166700 Rh5CG181100 Rh5CG182300 Rh5DG168600 Rh6BG409700
rosa_wichuraiana	Rw0G001580 Rw0G004990 Rw1G017410 Rw2G027840 Rw4G002740 Rw5G015190 Rw5G015310 Rw7G033830

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	278
AccB1I	GGYRCC	2 cut(s)	47, 80
AccI	GTMKAC	2 cut(s)	282, 324
AccII	CGCG	2 cut(s)	9, 120
AciI	CCGC	5 cut(s)	7, 9, 118, 233, 254
AcsI	RAATTY	2 cut(s)	352, 406
AcyI	GRCGYC	2 cut(s)	48, 81
AfiI	CCNNNNNNNGG	3 cut(s)	124, 210, 250
AgsI	TTSAA	1 cut(s)	397
AhdI	GACNNNNNGTC	1 cut(s)	307
AjiI	CACGTC	2 cut(s)	250, 304
AluBI	AGCT	5 cut(s)	90, 97, 133, 174, 201
AluI	AGCT	5 cut(s)	90, 97, 133, 174, 201
Alw21I	GWGCWC	1 cut(s)	203
Alw26I	GTCTC	1 cut(s)	6
AoxI	GGCC	1 cut(s)	241
ApoI	RAATTY	2 cut(s)	352, 406
AspLEI	GCGC	2 cut(s)	50, 83
AsuC2I	CCSGG	1 cut(s)	245
AsuHPI	GGTGA	3 cut(s)	61, 139, 274
BanI	GGYRCC	2 cut(s)	47, 80
BanII	GRGCYC	1 cut(s)	203
Bbv12I	GWGCWC	1 cut(s)	203
BccI	CCATC	1 cut(s)	320
BceAI	ACGGC	1 cut(s)	61
BciVI	GTATCC	1 cut(s)	29
BcnI	CCSGG	1 cut(s)	245
BcoDI	GTCTC	1 cut(s)	6
BfoI	RGCGCY	2 cut(s)	51, 84
BfuI	GTATCC	1 cut(s)	29
BisI	GCNGC	2 cut(s)	118, 255
BlsI	GCNGC	2 cut(s)	119, 256
Bme1390I	CCNGG	1 cut(s)	245
BmeRI	GACNNNNNGTC	1 cut(s)	307
BmgBI	CACGTC	2 cut(s)	250, 304
BmiI	GGNNCC	2 cut(s)	49, 82
BmrFI	CCNGG	1 cut(s)	245
BpuMI	CCSGG	1 cut(s)	245
BsaHI	GRCGYC	2 cut(s)	48, 81
BsaI	GGTCTC	1 cut(s)	6
BsaJI	CCNNGG	3 cut(s)	7, 43, 194
Bsc4I	CCNNNNNNNGG	3 cut(s)	124, 210, 250
BseDI	CCNNGG	3 cut(s)	7, 43, 194
BseLI	CCNNNNNNNGG	3 cut(s)	124, 210, 250
BseMII	CTCAG	1 cut(s)	343
BseRI	GAGGAG	1 cut(s)	236
BseYI	CCCAGC	1 cut(s)	86
Bsh1236I	CGCG	2 cut(s)	9, 120
BshFI	GGCC	1 cut(s)	243
BshNI	GGYRCC	2 cut(s)	47, 80
BsiHKAI	GWGCWC	1 cut(s)	203
BsiSI	CCGG	2 cut(s)	78, 244
BslFI	GGGAC	2 cut(s)	260, 281
BslI	CCNNNNNNNGG	3 cut(s)	124, 210, 250
BsmAI	GTCTC	1 cut(s)	6
BsmFI	GGGAC	2 cut(s)	260, 281
BsnI	GGCC	1 cut(s)	243
Bso31I	GGTCTC	1 cut(s)	6
Bsp1286I	GDGCHC	1 cut(s)	203
BspACI	CCGC	5 cut(s)	7, 9, 118, 233, 254
BspANI	GGCC	1 cut(s)	243
BspCNI	CTCAG	1 cut(s)	342
BspFNI	CGCG	2 cut(s)	9, 120
BspHI	TCATGA	1 cut(s)	348
BspLI	GGNNCC	2 cut(s)	49, 82
BspT107I	GGYRCC	2 cut(s)	47, 80
BspTNI	GGTCTC	1 cut(s)	6
BssECI	CCNNGG	3 cut(s)	7, 43, 194
BssNI	GRCGYC	2 cut(s)	48, 81
BssT1I	CCWWGG	1 cut(s)	194
Bst4CI	ACNGT	2 cut(s)	17, 262
BstACI	GRCGYC	2 cut(s)	48, 81
BstC8I	GCNNGC	2 cut(s)	115, 135
BstDEI	CTNAG	1 cut(s)	329
BstDSI	CCRYGG	2 cut(s)	7, 43
BstFNI	CGCG	2 cut(s)	9, 120
BstH2I	RGCGCY	2 cut(s)	51, 84
BstHHI	GCGC	2 cut(s)	50, 83
BstMAI	GTCTC	1 cut(s)	6
BstMWI	GCNNNNNNNGC	1 cut(s)	87
BstSCI	CCNGG	1 cut(s)	243
BstUI	CGCG	2 cut(s)	9, 120
BstXI	CCANNNNNNTGG	1 cut(s)	100
BsuI	GTATCC	1 cut(s)	29
BsuRI	GGCC	1 cut(s)	243
BtgI	CCRYGG	2 cut(s)	7, 43
BtrI	CACGTC	2 cut(s)	250, 304
Cac8I	GCNNGC	2 cut(s)	115, 135
CciI	TCATGA	1 cut(s)	348
CfoI	GCGC	2 cut(s)	50, 83
Cfr42I	CCGCGG	1 cut(s)	10
CviAII	CATG	5 cut(s)	109, 166, 184, 229, 349
CviJI	RGCY	8 cut(s)	90, 97, 105, 117, 133, 174, 201, 243
CviKI_1	RGCY	8 cut(s)	90, 97, 105, 117, 133, 174, 201, 243
DdeI	CTNAG	1 cut(s)	329
DinI	GGCGCC	2 cut(s)	49, 82
DrdI	GACNNNNNNGTC	1 cut(s)	278
DriI	GACNNNNNGTC	1 cut(s)	307
DseDI	GACNNNNNNGTC	1 cut(s)	278
Eam1105I	GACNNNNNGTC	1 cut(s)	307
EciI	GGCGGA	1 cut(s)	248
Ecl136II	GAGCTC	1 cut(s)	201
Eco130I	CCWWGG	1 cut(s)	194
Eco24I	GRGCYC	1 cut(s)	203
Eco31I	GGTCTC	1 cut(s)	6
Eco53kI	GAGCTC	1 cut(s)	201
EcoICRI	GAGCTC	1 cut(s)	201
EcoT14I	CCWWGG	1 cut(s)	194
EcoT38I	GRGCYC	1 cut(s)	203
EgeI	GGCGCC	2 cut(s)	49, 82
EheI	GGCGCC	2 cut(s)	49, 82
ErhI	CCWWGG	1 cut(s)	194
FaeI	CATG	5 cut(s)	112, 169, 187, 232, 352
FaiI	YATR	5 cut(s)	110, 167, 185, 230, 350
FaqI	GGGAC	2 cut(s)	260, 281
FatI	CATG	5 cut(s)	108, 165, 183, 228, 348
FauI	CCCGC	1 cut(s)	14
FblI	GTMKAC	2 cut(s)	282, 324
Fnu4HI	GCNGC	2 cut(s)	118, 255
FriOI	GRGCYC	1 cut(s)	203
Fsp4HI	GCNGC	2 cut(s)	118, 255
GlaI	GCGC	2 cut(s)	49, 82
GluI	GCNGC	2 cut(s)	118, 255
GsaI	CCCAGC	1 cut(s)	90
HaeII	RGCGCY	2 cut(s)	51, 84
HaeIII	GGCC	1 cut(s)	243
HapII	CCGG	2 cut(s)	78, 244
HhaI	GCGC	2 cut(s)	50, 83
Hin1I	GRCGYC	2 cut(s)	48, 81
Hin1II	CATG	5 cut(s)	112, 169, 187, 232, 352
Hin6I	GCGC	2 cut(s)	48, 81
HinP1I	GCGC	2 cut(s)	48, 81
HincII	GTYRAC	1 cut(s)	283
HindII	GTYRAC	1 cut(s)	283
HindIII	AAGCTT	1 cut(s)	95
HinfI	GANTC	3 cut(s)	74, 308, 333
HpaII	CCGG	2 cut(s)	78, 244
HphI	GGTGA	3 cut(s)	61, 139, 274
Hpy166II	GTNNAC	2 cut(s)	283, 325
Hpy188I	TCNGA	2 cut(s)	205, 332
Hpy188III	TCNNGA	2 cut(s)	151, 349
Hpy8I	GTNNAC	2 cut(s)	283, 325
Hpy99I	CGWCG	4 cut(s)	35, 262, 275, 287
HpyAV	CCTTC	1 cut(s)	289
HpyCH4III	ACNGT	2 cut(s)	17, 262
HpyCH4IV	ACGT	5 cut(s)	33, 60, 249, 285, 303
HpyF10VI	GCNNNNNNNGC	1 cut(s)	87
HpyF3I	CTNAG	1 cut(s)	329
HpySE526I	ACGT	5 cut(s)	33, 60, 249, 285, 303
Hsp92I	GRCGYC	2 cut(s)	48, 81
Hsp92II	CATG	5 cut(s)	112, 169, 187, 232, 352
HspAI	GCGC	2 cut(s)	48, 81
KasI	GGCGCC	2 cut(s)	47, 80
KspI	CCGCGG	1 cut(s)	10
LmnI	GCTCC	3 cut(s)	95, 198, 206
LpnPI	CCDG	4 cut(s)	91, 100, 119, 257
MaeII	ACGT	5 cut(s)	33, 60, 249, 285, 303
MaeIII	GTNAC	1 cut(s)	67
MboII	GAAGA	2 cut(s)	226, 337
MhlI	GDGCHC	1 cut(s)	203
MluCI	AATT	4 cut(s)	352, 374, 384, 406
Mly113I	GGCGCC	2 cut(s)	48, 81
MlyI	GAGTC	2 cut(s)	83, 317
MnlI	CCTC	8 cut(s)	74, 139, 214, 258, 268, 292, 313, 338
MseI	TTAA	1 cut(s)	383
MspA1I	CMGCKG	1 cut(s)	9
MspI	CCGG	2 cut(s)	78, 244
MspR9I	CCNGG	1 cut(s)	245
MvnI	CGCG	2 cut(s)	9, 120
MwoI	GCNNNNNNNGC	1 cut(s)	87
NarI	GGCGCC	2 cut(s)	48, 81
NciI	CCSGG	1 cut(s)	245
NlaIII	CATG	5 cut(s)	112, 169, 187, 232, 352
NlaIV	GGNNCC	2 cut(s)	49, 82
NmuCI	GTSAC	1 cut(s)	67
PagI	TCATGA	1 cut(s)	348
PcsI	WCGNNNNNNNCGW	2 cut(s)	36, 279
PfeI	GAWTC	1 cut(s)	333
PkrI	GCNGC	2 cut(s)	119, 256
PleI	GAGTC	2 cut(s)	82, 316
PluTI	GGCGCC	2 cut(s)	51, 84
PpsI	GAGTC	2 cut(s)	82, 316
Psp124BI	GAGCTC	1 cut(s)	203
PspFI	CCCAGC	1 cut(s)	86
PspN4I	GGNNCC	2 cut(s)	49, 82
SacI	GAGCTC	1 cut(s)	203
SacII	CCGCGG	1 cut(s)	10
SalI	GTCGAC	1 cut(s)	281
SaqAI	TTAA	1 cut(s)	383
SatI	GCNGC	2 cut(s)	118, 255
SchI	GAGTC	2 cut(s)	83, 317
ScrFI	CCNGG	1 cut(s)	245
SduI	GDGCHC	1 cut(s)	203
SfoI	GGCGCC	2 cut(s)	49, 82
Sfr303I	CCGCGG	1 cut(s)	10
SgrBI	CCGCGG	1 cut(s)	10
Sse9I	AATT	4 cut(s)	352, 374, 384, 406
SsiI	CCGC	5 cut(s)	7, 9, 118, 233, 254
SspDI	GGCGCC	2 cut(s)	47, 80
SstI	GAGCTC	1 cut(s)	203
StyD4I	CCNGG	1 cut(s)	243
StyI	CCWWGG	1 cut(s)	194
TaaI	ACNGT	2 cut(s)	17, 262
TaiI	ACGT	5 cut(s)	36, 63, 252, 288, 306
TaqI	TCGA	2 cut(s)	39, 282
TasI	AATT	4 cut(s)	352, 374, 384, 406
TauI	GCSGC	2 cut(s)	120, 257
TfiI	GAWTC	1 cut(s)	333
Tru1I	TTAA	1 cut(s)	383
Tru9I	TTAA	1 cut(s)	383
TseFI	GTSAC	1 cut(s)	67
Tsp45I	GTSAC	1 cut(s)	67
TspDTI	ATGAA	3 cut(s)	217, 337, 365
XapI	RAATTY	2 cut(s)	352, 406
XmiI	GTMKAC	2 cut(s)	282, 324

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.