Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0000110.1

Orthogroup ID

OG0000729

Physical Location & Seq

Genomic Coordinates Reverse (-)

138989 .. 139612

Gene Structure 624 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0000110.1_g000028.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 624 bp

atggacacagtcaccgagtcccacatggcagtctccatggccgccctcggcggcatcgtcatcctccactccaacgccgcttcctccaaccaggccgccatggtcagatccgtcaaggcccgccgcgtccccctcctctccgcccccatcttcatgtcccgcggagaccgcatccacaacgacgacgttttcgactatggcgccaatccctacgtcctcgtcaccgagtctggcgcccccagctccaagcttttgggctacatggtgagccgcgattgggtgaagctggcgaacaaggaggtcaagatttacgattacatggttagctgtaaggacatggttttgccttggagctccgatttggggaagattgaagagttcatggcggataaaggtcgggacgtggcggcgacggtgagggacgacgaggttgtcgacgttgtgaggaaggaggacgtggagtccatcaatgaggtagacctcagattcttttgtttcaccggcgccgagtccatcaatgaggtagacctcagattctttcgtttcttcatgaatttggtgtgggtcttttctaaattgtgtttaattacttctttgaagcattggaatttagggatttattga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0003938 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006139 GO:0006163 GO:0006164 GO:0006183 GO:0006725 GO:0006753 GO:0006793 GO:0006796 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009116 GO:0009117 GO:0009119 GO:0009141 GO:0009142 GO:0009144 GO:0009145 GO:0009150 GO:0009152 GO:0009163 GO:0009165 GO:0009199 GO:0009201 GO:0009205 GO:0009206 GO:0009259 GO:0009260 GO:0009719 GO:0009725 GO:0009735 GO:0009987 GO:0010033 GO:0016491 GO:0016614 GO:0016616 GO:0018130 GO:0019438 GO:0019637 GO:0019693 GO:0034404 GO:0034641 GO:0034654 GO:0042221 GO:0042278 GO:0042451 GO:0042455 GO:0044237 GO:0044238 GO:0044249 GO:0044271 GO:0044281 GO:0044283 GO:0044424 GO:0044444 GO:0044464 GO:0046039 GO:0046128 GO:0046129 GO:0046390 GO:0046483 GO:0050896 GO:0055086 GO:0055114 GO:0071704 GO:0072521 GO:0072522 GO:0090407 GO:1901068 GO:1901070 GO:1901135 GO:1901137 GO:1901293 GO:1901360 GO:1901362 GO:1901564 GO:1901566 GO:1901576 GO:1901657 GO:1901659

KEGG Pathways

Metabolic & Signaling

ko00230 ko00983 ko01100 ko01110 map00230 map00983 map01100 map01110

Pfam Domains

Protein Families

IMPDH

Protein Analysis

207

Amino Acids

23.33

Weight (kDa)

5.4

Isoelectric Point (pI)

39.31

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000729)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G16350 AT1G79470
fragaria_vesca	FvH4_3g14430 FvH4_3g14430
malus_domestica	MD05G1237000.v1.1 MD05G1237500.v1.1 MD10G1213800.v1.1
prunus_persica	Prupe.4G129200_v2.0.a1 Prupe.4G129200_v2.0.a1
pyrus_communis	pycom05g21380 pycom10g18050 pycom10g18080 pycom10g18140 pycom10g18190
rosa_chinensis	RchiOBHm_Chr1g0350061 RchiOBHm_Chr2g0101951 RchiOBHm_Chr2g0155871 RchiOBHm_Chr3g0468611 RchiOBHm_Chr3g0493461 RchiOBHm_Chr4g0401281 RchiOBHm_Chr4g0402021 RchiOBHm_Chr5g0023561 RchiOBHm_Chr5g0023571 RchiOBHm_Chr5g0023741 RchiOBHm_Chr7g0231801 RchiOBHm_Chr7g0234111 RchiOBHm_Chr7g0238791 RchiOBHm_Chr7g0239601
rosa_laevigata	RLG00000032733
rosa_multiflora	Rmu_co8005014.1_g000001 Rmu_co8223904.1_g000001 Rmu_sc0000087.1_g000007 Rmu_sc0000110.1_g000028 Rmu_sc0000172.1_g000003 Rmu_sc0000689.1_g000019 Rmu_sc0000870.1_g000014 Rmu_sc0001372.1_g000011 Rmu_sc0001516.1_g000086 Rmu_sc0001653.1_g000008 Rmu_sc0002862.1_g000001 Rmu_sc0002862.1_g000002 Rmu_sc0008652.1_g000002 Rmu_sc0011789.1_g000002 Rmu_sc0013252.1_g000001 Rmu_sc0017256.1_g000001 Rmu_sc0017907.1_g000002 Rmu_sc0017907.1_g000003 Rmu_sc0018737.1_g000003 Rmu_sc0020536.1_g000001 Rmu_sc0025127.1_g000001 Rmu_sc0028608.1_g000001 Rmu_sc0029703.1_g000001 Rmu_ssc0000027.1_g000015
rosa_roxburghii	Rroxscaffold_1G00055450
rosa_rugosa	Rorug03G0326300 Rorug05G0079400 Rorug05G0352300
rosa_samantha	Rh5AG167200 Rh5AG169300 Rh5BG166700 Rh5CG181100 Rh5CG182300 Rh5DG168600 Rh6BG409700
rosa_wichuraiana	Rw0G001580 Rw0G004990 Rw1G017410 Rw2G027840 Rw4G002740 Rw5G015190 Rw5G015310 Rw7G033830

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	431
AccB1I	GGYRCC	3 cut(s)	200, 233, 503
AccI	GTMKAC	3 cut(s)	435, 477, 525
AccII	CGCG	3 cut(s)	126, 162, 273
AclWI	GGATC	1 cut(s)	102
AcoI	YGGCCR	1 cut(s)	39
AcsI	RAATTY	2 cut(s)	553, 607
AcyI	GRCGYC	3 cut(s)	201, 234, 504
AfiI	CCNNNNNNNGG	2 cut(s)	277, 363
AgsI	TTSAA	2 cut(s)	374, 598
AhdI	GACNNNNNGTC	1 cut(s)	460
AjiI	CACGTC	2 cut(s)	403, 457
AjnI	CCWGG	1 cut(s)	90
AluBI	AGCT	5 cut(s)	243, 250, 286, 327, 354
AluI	AGCT	5 cut(s)	243, 250, 286, 327, 354
Alw21I	GWGCWC	1 cut(s)	356
Alw26I	GTCTC	2 cut(s)	37, 159
AlwI	GGATC	1 cut(s)	102
AoxI	GGCC	3 cut(s)	39, 93, 117
ApoI	RAATTY	2 cut(s)	553, 607
ArsI	GACNNNNNNTTYG	2 cut(s)	173, 205
AspLEI	GCGC	3 cut(s)	203, 236, 506
AspS9I	GGNCC	1 cut(s)	118
AsuHPI	GGTGA	6 cut(s)	4, 214, 277, 292, 427, 490
BanI	GGYRCC	3 cut(s)	200, 233, 503
BanII	GRGCYC	1 cut(s)	356
Bbv12I	GWGCWC	1 cut(s)	356
BccI	CCATC	3 cut(s)	155, 473, 521
BciT130I	CCWGG	1 cut(s)	92
BcoDI	GTCTC	2 cut(s)	37, 159
BfoI	RGCGCY	3 cut(s)	204, 237, 507
BisI	GCNGC	7 cut(s)	42, 52, 78, 96, 124, 271, 408
BlsI	GCNGC	7 cut(s)	43, 53, 79, 97, 125, 272, 409
Bme1390I	CCNGG	1 cut(s)	92
BmeRI	GACNNNNNGTC	1 cut(s)	460
BmgBI	CACGTC	2 cut(s)	403, 457
BmgT120I	GGNCC	1 cut(s)	118
BmiI	GGNNCC	3 cut(s)	202, 235, 505
BmrFI	CCNGG	1 cut(s)	92
BmsI	GCATC	2 cut(s)	63, 180
BsaHI	GRCGYC	3 cut(s)	201, 234, 504
BsaI	GGTCTC	1 cut(s)	159
BsaJI	CCNNGG	5 cut(s)	36, 46, 99, 160, 347
Bsc4I	CCNNNNNNNGG	2 cut(s)	277, 363
Bse118I	RCCGGY	1 cut(s)	500
BseBI	CCWGG	1 cut(s)	92
BseDI	CCNNGG	5 cut(s)	36, 46, 99, 160, 347
BseGI	GGATG	2 cut(s)	60, 171
BseLI	CCNNNNNNNGG	2 cut(s)	277, 363
BseMII	CTCAG	2 cut(s)	496, 544
BseRI	GAGGAG	1 cut(s)	125
BseYI	CCCAGC	1 cut(s)	239
Bsh1236I	CGCG	3 cut(s)	126, 162, 273
BshFI	GGCC	3 cut(s)	41, 95, 119
BshNI	GGYRCC	3 cut(s)	200, 233, 503
BsiHKAI	GWGCWC	1 cut(s)	356
BsiSI	CCGG	1 cut(s)	501
BslFI	GGGAC	5 cut(s)	4, 113, 142, 413, 434
BslI	CCNNNNNNNGG	2 cut(s)	277, 363
BsmAI	GTCTC	2 cut(s)	37, 159
BsmFI	GGGAC	5 cut(s)	4, 113, 142, 413, 434
BsnI	GGCC	3 cut(s)	41, 95, 119
Bso31I	GGTCTC	1 cut(s)	159
Bsp1286I	GDGCHC	1 cut(s)	356
Bsp143I	GATC	1 cut(s)	107
Bsp19I	CCATGG	2 cut(s)	36, 99
BspANI	GGCC	3 cut(s)	41, 95, 119
BspCNI	CTCAG	2 cut(s)	495, 543
BspFNI	CGCG	3 cut(s)	126, 162, 273
BspHI	TCATGA	1 cut(s)	549
BspLI	GGNNCC	3 cut(s)	202, 235, 505
BspPI	GGATC	1 cut(s)	102
BspT107I	GGYRCC	3 cut(s)	200, 233, 503
BspTNI	GGTCTC	1 cut(s)	159
BsrFI	RCCGGY	1 cut(s)	500
BssAI	RCCGGY	1 cut(s)	500
BssECI	CCNNGG	5 cut(s)	36, 46, 99, 160, 347
BssMI	GATC	1 cut(s)	107
BssNI	GRCGYC	3 cut(s)	201, 234, 504
BssT1I	CCWWGG	3 cut(s)	36, 99, 347
Bst2UI	CCWGG	1 cut(s)	92
Bst4CI	ACNGT	2 cut(s)	10, 415
Bst6I	CTCTTC	1 cut(s)	369
BstACI	GRCGYC	3 cut(s)	201, 234, 504
BstC8I	GCNNGC	2 cut(s)	121, 288
BstDEI	CTNAG	2 cut(s)	482, 530
BstDSI	CCRYGG	3 cut(s)	36, 99, 160
BstF5I	GGATG	2 cut(s)	60, 171
BstFNI	CGCG	3 cut(s)	126, 162, 273
BstH2I	RGCGCY	3 cut(s)	204, 237, 507
BstHHI	GCGC	3 cut(s)	203, 236, 506
BstKTI	GATC	1 cut(s)	110
BstMAI	GTCTC	2 cut(s)	37, 159
BstMBI	GATC	1 cut(s)	107
BstMWI	GCNNNNNNNGC	2 cut(s)	168, 240
BstNI	CCWGG	1 cut(s)	92
BstSCI	CCNGG	1 cut(s)	90
BstUI	CGCG	3 cut(s)	126, 162, 273
BstX2I	RGATCY	1 cut(s)	107
BstXI	CCANNNNNNTGG	1 cut(s)	253
BstYI	RGATCY	1 cut(s)	107
BsuRI	GGCC	3 cut(s)	41, 95, 119
BtgI	CCRYGG	3 cut(s)	36, 99, 160
BtrI	CACGTC	2 cut(s)	403, 457
BtsCI	GGATG	2 cut(s)	60, 171
Cac8I	GCNNGC	2 cut(s)	121, 288
CciI	TCATGA	1 cut(s)	549
CfoI	GCGC	3 cut(s)	203, 236, 506
Cfr10I	RCCGGY	1 cut(s)	500
Cfr13I	GGNCC	1 cut(s)	118
Cfr42I	CCGCGG	1 cut(s)	163
CseI	GACGC	1 cut(s)	115
CviAII	CATG	9 cut(s)	25, 37, 100, 154, 262, 319, 337, 382, 550
DdeI	CTNAG	2 cut(s)	482, 530
DinI	GGCGCC	3 cut(s)	202, 235, 505
DpnI	GATC	1 cut(s)	109
DpnII	GATC	1 cut(s)	107
DrdI	GACNNNNNNGTC	1 cut(s)	431
DriI	GACNNNNNGTC	1 cut(s)	460
DseDI	GACNNNNNNGTC	1 cut(s)	431
EaeI	YGGCCR	1 cut(s)	39
Eam1104I	CTCTTC	1 cut(s)	369
Eam1105I	GACNNNNNGTC	1 cut(s)	460
EarI	CTCTTC	1 cut(s)	369
EciI	GGCGGA	2 cut(s)	130, 401
Ecl136II	GAGCTC	1 cut(s)	354
Eco130I	CCWWGG	3 cut(s)	36, 99, 347
Eco24I	GRGCYC	1 cut(s)	356
Eco31I	GGTCTC	1 cut(s)	159
Eco53kI	GAGCTC	1 cut(s)	354
EcoICRI	GAGCTC	1 cut(s)	354
EcoRII	CCWGG	1 cut(s)	90
EcoT14I	CCWWGG	3 cut(s)	36, 99, 347
EcoT38I	GRGCYC	1 cut(s)	356
EgeI	GGCGCC	3 cut(s)	202, 235, 505
EheI	GGCGCC	3 cut(s)	202, 235, 505
ErhI	CCWWGG	3 cut(s)	36, 99, 347
FaeI	CATG	9 cut(s)	28, 40, 103, 157, 265, 322, 340, 385, 553
FaqI	GGGAC	5 cut(s)	4, 113, 142, 413, 434
FatI	CATG	9 cut(s)	24, 36, 99, 153, 261, 318, 336, 381, 549
FauI	CCCGC	2 cut(s)	128, 167
FblI	GTMKAC	3 cut(s)	435, 477, 525
Fnu4HI	GCNGC	7 cut(s)	42, 52, 78, 96, 124, 271, 408
FokI	GGATG	2 cut(s)	47, 158
FriOI	GRGCYC	1 cut(s)	356
Fsp4HI	GCNGC	7 cut(s)	42, 52, 78, 96, 124, 271, 408
GlaI	GCGC	3 cut(s)	202, 235, 505
GluI	GCNGC	7 cut(s)	42, 52, 78, 96, 124, 271, 408
GsaI	CCCAGC	1 cut(s)	243
HaeII	RGCGCY	3 cut(s)	204, 237, 507
HaeIII	GGCC	3 cut(s)	41, 95, 119
HapII	CCGG	1 cut(s)	501
HgaI	GACGC	1 cut(s)	115
HhaI	GCGC	3 cut(s)	203, 236, 506
Hin1I	GRCGYC	3 cut(s)	201, 234, 504
Hin1II	CATG	9 cut(s)	28, 40, 103, 157, 265, 322, 340, 385, 553
Hin6I	GCGC	3 cut(s)	201, 234, 504
HinP1I	GCGC	3 cut(s)	201, 234, 504
HincII	GTYRAC	1 cut(s)	436
HindII	GTYRAC	1 cut(s)	436
HindIII	AAGCTT	1 cut(s)	248
HinfI	GANTC	6 cut(s)	17, 227, 461, 486, 509, 534
HpaII	CCGG	1 cut(s)	501
HphI	GGTGA	6 cut(s)	4, 214, 277, 292, 427, 490
Hpy166II	GTNNAC	3 cut(s)	436, 478, 526
Hpy188I	TCNGA	4 cut(s)	107, 358, 485, 533
Hpy188III	TCNNGA	3 cut(s)	304, 398, 550
Hpy8I	GTNNAC	3 cut(s)	436, 478, 526
Hpy99I	CGWCG	5 cut(s)	185, 188, 415, 428, 440
HpyAV	CCTTC	1 cut(s)	442
HpyCH4III	ACNGT	2 cut(s)	10, 415
HpyCH4IV	ACGT	5 cut(s)	186, 213, 402, 438, 456
HpyF10VI	GCNNNNNNNGC	2 cut(s)	168, 240
HpyF3I	CTNAG	2 cut(s)	482, 530
HpySE526I	ACGT	5 cut(s)	186, 213, 402, 438, 456
Hsp92I	GRCGYC	3 cut(s)	201, 234, 504
Hsp92II	CATG	9 cut(s)	28, 40, 103, 157, 265, 322, 340, 385, 553
HspAI	GCGC	3 cut(s)	201, 234, 504
KasI	GGCGCC	3 cut(s)	200, 233, 503
KspI	CCGCGG	1 cut(s)	163
Kzo9I	GATC	1 cut(s)	107
LmnI	GCTCC	3 cut(s)	248, 351, 359
LpnPI	CCDG	6 cut(s)	77, 104, 216, 253, 272, 514
LweI	GCATC	2 cut(s)	63, 180
MaeII	ACGT	5 cut(s)	186, 213, 402, 438, 456
MaeIII	GTNAC	2 cut(s)	10, 220
MalI	GATC	1 cut(s)	109
MboI	GATC	1 cut(s)	107
MboII	GAAGA	4 cut(s)	142, 379, 386, 538
MflI	RGATCY	1 cut(s)	107
MhlI	GDGCHC	1 cut(s)	356
MluCI	AATT	4 cut(s)	553, 575, 585, 607
Mly113I	GGCGCC	3 cut(s)	201, 234, 504
MlyI	GAGTC	4 cut(s)	26, 236, 470, 518
MmeI	TCCRAC	2 cut(s)	96, 111
MseI	TTAA	1 cut(s)	584
MslI	CAYNNNNRTG	1 cut(s)	152
MspA1I	CMGCKG	1 cut(s)	162
MspI	CCGG	1 cut(s)	501
MspR9I	CCNGG	1 cut(s)	92
MvaI	CCWGG	1 cut(s)	92
MvnI	CGCG	3 cut(s)	126, 162, 273
MwoI	GCNNNNNNNGC	2 cut(s)	168, 240
NarI	GGCGCC	3 cut(s)	201, 234, 504
NcoI	CCATGG	2 cut(s)	36, 99
NdeII	GATC	1 cut(s)	107
NlaIII	CATG	9 cut(s)	28, 40, 103, 157, 265, 322, 340, 385, 553
NlaIV	GGNNCC	3 cut(s)	202, 235, 505
NmeAIII	GCCGAG	2 cut(s)	27, 532
NmuCI	GTSAC	2 cut(s)	10, 220
PagI	TCATGA	1 cut(s)	549
PcsI	WCGNNNNNNNCGW	3 cut(s)	54, 189, 432
PfeI	GAWTC	2 cut(s)	486, 534
PflFI	GACNNNGTC	1 cut(s)	8
PkrI	GCNGC	7 cut(s)	43, 53, 79, 97, 125, 272, 409
PleI	GAGTC	4 cut(s)	25, 235, 469, 517
PluTI	GGCGCC	3 cut(s)	204, 237, 507
PpsI	GAGTC	4 cut(s)	25, 235, 469, 517
Psp124BI	GAGCTC	1 cut(s)	356
Psp6I	CCWGG	1 cut(s)	90
PspFI	CCCAGC	1 cut(s)	239
PspGI	CCWGG	1 cut(s)	90
PspN4I	GGNNCC	3 cut(s)	202, 235, 505
PspPI	GGNCC	1 cut(s)	118
PsuI	RGATCY	1 cut(s)	107
PsyI	GACNNNGTC	1 cut(s)	8
RseI	CAYNNNNRTG	1 cut(s)	152
SacI	GAGCTC	1 cut(s)	356
SacII	CCGCGG	1 cut(s)	163
SalI	GTCGAC	1 cut(s)	434
SaqAI	TTAA	1 cut(s)	584
SatI	GCNGC	7 cut(s)	42, 52, 78, 96, 124, 271, 408
Sau3AI	GATC	1 cut(s)	107
Sau96I	GGNCC	1 cut(s)	118
SchI	GAGTC	4 cut(s)	26, 236, 470, 518
ScrFI	CCNGG	1 cut(s)	92
SduI	GDGCHC	1 cut(s)	356
SfaNI	GCATC	2 cut(s)	63, 180
SfoI	GGCGCC	3 cut(s)	202, 235, 505
Sfr303I	CCGCGG	1 cut(s)	163
SgrAI	CRCCGGYG	1 cut(s)	500
SgrBI	CCGCGG	1 cut(s)	163
SmiMI	CAYNNNNRTG	1 cut(s)	152
Sse9I	AATT	4 cut(s)	553, 575, 585, 607
SspDI	GGCGCC	3 cut(s)	200, 233, 503
SstI	GAGCTC	1 cut(s)	356
StyD4I	CCNGG	1 cut(s)	90
StyI	CCWWGG	3 cut(s)	36, 99, 347
TaaI	ACNGT	2 cut(s)	10, 415
TaiI	ACGT	5 cut(s)	189, 216, 405, 441, 459
TaqI	TCGA	2 cut(s)	192, 435
TasI	AATT	4 cut(s)	553, 575, 585, 607
TauI	GCSGC	7 cut(s)	44, 54, 80, 98, 126, 273, 410
TfiI	GAWTC	2 cut(s)	486, 534
Tru1I	TTAA	1 cut(s)	584
Tru9I	TTAA	1 cut(s)	584
TseFI	GTSAC	2 cut(s)	10, 220
Tsp45I	GTSAC	2 cut(s)	10, 220
TspDTI	ATGAA	4 cut(s)	142, 370, 538, 566
TspGWI	ACGGA	1 cut(s)	100
Tth111I	GACNNNGTC	1 cut(s)	8
XapI	RAATTY	2 cut(s)	553, 607
XmiI	GTMKAC	3 cut(s)	435, 477, 525

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.