Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000005

Orthogroup ID

OG0005634

Physical Location & Seq

Genomic Coordinates Forward (+)

43943236 .. 43943984

Gene Structure 749 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug05G0352200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 345 bp

ATGTTGGGTGGAGTGAGAGGAGGTGGTAGTGGTATGAAGGATGGAGCTGGTGAGTGTGAAGAGACTGTGGGCTCGGAGGAAATGGGTTGTCTCTGGTGCGTCAGGGAGTGGACCAAGGTTGGTAATGTTCCAGTATTTGTTACTAAAATTCCATTGATCTCCATTGATTACGAACCACCAAGTGCTAAGTCATTTAAATCCATAGAAGCATCAGCGAGGATCGATGCTATAGCTAGTGCAGGATTTAAGATTTCACGGTCAAAACTAGTTGACCAGATCCGGTATAACGTTTTTGCTTATGCTGATCTGTCCCTCATTTTGATTATGGTTGTTTCAGTCTGTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000981 GO:0000988 GO:0000989 GO:0001067 GO:0001076 GO:0001101 GO:0001134 GO:0001135 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0006357 GO:0008150 GO:0009719 GO:0009723 GO:0009725 GO:0009739 GO:0009751 GO:0009753 GO:0009889 GO:0009987 GO:0010033 GO:0010035 GO:0010038 GO:0010200 GO:0010243 GO:0010468 GO:0010556 GO:0014070 GO:0019219 GO:0019222 GO:0030154 GO:0031323 GO:0031326 GO:0032502 GO:0033993 GO:0042221 GO:0042493 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044212 GO:0044424 GO:0044464 GO:0046677 GO:0046686 GO:0048869 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0097159 GO:0140110 GO:1901363 GO:1901698 GO:1901700 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Myb_DNA-binding

Protein Analysis

114

Amino Acids

12.22

Weight (kDa)

5.4

Isoelectric Point (pI)

32.12

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0005634)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G46130 AT3G46130 AT3G46130 AT3G46130 AT5G59780
fragaria_vesca	FvH4_3g34960 FvH4_3g34960 FvH4_3g34960
malus_domestica	MD03G1099900.v1.1 MD11G1114000.v1.1 MD11G1114100.v1.1
prunus_persica	Prupe.6G085000_v2.0.a1 Prupe.6G085000_v2.0.a1 Prupe.6G085000_v2.0.a1 Prupe.6G085000_v2.0.a1
pyrus_communis	pycom03g08220
rosa_chinensis	RchiOBHm_Chr5g0062851
rosa_laevigata	RLG00000035584
rosa_multiflora	Rmu_sc0012945.1_g000002
rosa_roxburghii	Rroxscaffold_1G00017790
rosa_rugosa	Rorug05G0352100 Rorug05G0352200 Rorug05G0352300
rosa_samantha	Rh5AG413200 Rh5BG427400 Rh5CG451100 Rh5DG441100
rosa_wichuraiana	Rw5G038820

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclI	AACGTT	1 cut(s)	288
AclWI	GGATC	2 cut(s)	227, 271
AcsI	RAATTY	1 cut(s)	147
AdeI	CACNNNGTG	1 cut(s)	182
AhlI	ACTAGT	1 cut(s)	265
AluBI	AGCT	2 cut(s)	47, 233
AluI	AGCT	2 cut(s)	47, 233
Alw26I	GTCTC	2 cut(s)	56, 95
AlwI	GGATC	2 cut(s)	227, 271
ApoI	RAATTY	1 cut(s)	147
AspS9I	GGNCC	1 cut(s)	111
AsuHPI	GGTGA	1 cut(s)	62
AvaII	GGWCC	1 cut(s)	111
BanII	GRGCYC	1 cut(s)	74
BccI	CCATC	1 cut(s)	35
BcoDI	GTCTC	2 cut(s)	56, 95
BcuI	ACTAGT	1 cut(s)	265
BfaI	CTAG	2 cut(s)	234, 266
BfmI	CTRYAG	1 cut(s)	228
Bme18I	GGWCC	1 cut(s)	111
BmgT120I	GGNCC	1 cut(s)	111
BmsI	GCATC	2 cut(s)	214, 218
Bsa29I	ATCGAT	1 cut(s)	222
BsaJI	CCNNGG	1 cut(s)	114
BsaWI	WCCGGW	1 cut(s)	279
Bse1I	ACTGG	1 cut(s)	131
BseCI	ATCGAT	1 cut(s)	222
BseDI	CCNNGG	1 cut(s)	114
BseGI	GGATG	1 cut(s)	46
BseNI	ACTGG	1 cut(s)	131
BseRI	GAGGAG	1 cut(s)	33
BsgI	GTGCAG	1 cut(s)	258
BshVI	ATCGAT	1 cut(s)	222
BsiSI	CCGG	1 cut(s)	280
BslFI	GGGAC	1 cut(s)	295
BsmAI	GTCTC	2 cut(s)	56, 95
BsmFI	GGGAC	1 cut(s)	295
Bsp1286I	GDGCHC	1 cut(s)	74
Bsp143I	GATC	4 cut(s)	156, 219, 276, 304
BspDI	ATCGAT	1 cut(s)	222
BspPI	GGATC	2 cut(s)	227, 271
BsrI	ACTGG	1 cut(s)	131
BssECI	CCNNGG	1 cut(s)	114
BssMI	GATC	4 cut(s)	156, 219, 276, 304
BssT1I	CCWWGG	1 cut(s)	114
Bst4CI	ACNGT	2 cut(s)	67, 258
Bst6I	CTCTTC	1 cut(s)	54
BstDEI	CTNAG	1 cut(s)	186
BstF5I	GGATG	1 cut(s)	46
BstKTI	GATC	4 cut(s)	159, 222, 279, 307
BstMAI	GTCTC	2 cut(s)	56, 95
BstMBI	GATC	4 cut(s)	156, 219, 276, 304
BstSFI	CTRYAG	1 cut(s)	228
BstX2I	RGATCY	1 cut(s)	276
BstYI	RGATCY	1 cut(s)	276
Bsu15I	ATCGAT	1 cut(s)	222
BsuTUI	ATCGAT	1 cut(s)	222
BtsCI	GGATG	1 cut(s)	46
Cfr13I	GGNCC	1 cut(s)	111
ClaI	ATCGAT	1 cut(s)	222
CseI	GACGC	1 cut(s)	88
CviJI	RGCY	3 cut(s)	47, 72, 233
CviKI_1	RGCY	3 cut(s)	47, 72, 233
DdeI	CTNAG	1 cut(s)	186
DpnI	GATC	4 cut(s)	158, 221, 278, 306
DpnII	GATC	4 cut(s)	156, 219, 276, 304
DraI	TTTAAA	1 cut(s)	196
DraIII	CACNNNGTG	1 cut(s)	182
Eam1104I	CTCTTC	1 cut(s)	54
EarI	CTCTTC	1 cut(s)	54
Eco130I	CCWWGG	1 cut(s)	114
Eco24I	GRGCYC	1 cut(s)	74
Eco47I	GGWCC	1 cut(s)	111
EcoT14I	CCWWGG	1 cut(s)	114
EcoT38I	GRGCYC	1 cut(s)	74
ErhI	CCWWGG	1 cut(s)	114
FaiI	YATR	6 cut(s)	35, 203, 230, 285, 300, 326
FaqI	GGGAC	1 cut(s)	295
FokI	GGATG	1 cut(s)	53
FriOI	GRGCYC	1 cut(s)	74
FspBI	CTAG	2 cut(s)	234, 266
HapII	CCGG	1 cut(s)	280
HgaI	GACGC	1 cut(s)	88
HincII	GTYRAC	1 cut(s)	271
HindII	GTYRAC	1 cut(s)	271
HpaII	CCGG	1 cut(s)	280
HphI	GGTGA	1 cut(s)	62
Hpy166II	GTNNAC	2 cut(s)	111, 271
Hpy188I	TCNGA	1 cut(s)	76
Hpy8I	GTNNAC	2 cut(s)	111, 271
HpyAV	CCTTC	1 cut(s)	31
HpyCH4III	ACNGT	2 cut(s)	67, 258
HpyCH4IV	ACGT	1 cut(s)	288
HpyCH4V	TGCA	1 cut(s)	239
HpyF3I	CTNAG	1 cut(s)	186
HpySE526I	ACGT	1 cut(s)	288
Kzo9I	GATC	4 cut(s)	156, 219, 276, 304
LmnI	GCTCC	1 cut(s)	44
LpnPI	CCDG	7 cut(s)	33, 79, 88, 144, 225, 287, 293
LweI	GCATC	2 cut(s)	214, 218
MaeI	CTAG	2 cut(s)	234, 266
MaeII	ACGT	1 cut(s)	288
MaeIII	GTNAC	1 cut(s)	139
MalI	GATC	4 cut(s)	158, 221, 278, 306
MboI	GATC	4 cut(s)	156, 219, 276, 304
MboII	GAAGA	1 cut(s)	71
MflI	RGATCY	1 cut(s)	276
MhlI	GDGCHC	1 cut(s)	74
MluCI	AATT	1 cut(s)	147
MnlI	CCTC	5 cut(s)	11, 14, 70, 210, 323
MseI	TTAA	3 cut(s)	195, 246, 343
MspI	CCGG	1 cut(s)	280
NdeII	GATC	4 cut(s)	156, 219, 276, 304
Psp1406I	AACGTT	1 cut(s)	288
PspPI	GGNCC	1 cut(s)	111
PsuI	RGATCY	1 cut(s)	276
SaqAI	TTAA	3 cut(s)	195, 246, 343
Sau3AI	GATC	4 cut(s)	156, 219, 276, 304
Sau96I	GGNCC	1 cut(s)	111
SduI	GDGCHC	1 cut(s)	74
SetI	ASST	5 cut(s)	25, 49, 120, 235, 291
SfaNI	GCATC	2 cut(s)	214, 218
SfcI	CTRYAG	1 cut(s)	228
SinI	GGWCC	1 cut(s)	111
SmiI	ATTTAAAT	1 cut(s)	196
SpeI	ACTAGT	1 cut(s)	265
Sse9I	AATT	1 cut(s)	147
SspMI	CTAG	2 cut(s)	234, 266
StyI	CCWWGG	1 cut(s)	114
SwaI	ATTTAAAT	1 cut(s)	196
TaaI	ACNGT	2 cut(s)	67, 258
TaiI	ACGT	1 cut(s)	291
TaqI	TCGA	1 cut(s)	222
TasI	AATT	1 cut(s)	147
Tru1I	TTAA	3 cut(s)	195, 246, 343
Tru9I	TTAA	3 cut(s)	195, 246, 343
TspDTI	ATGAA	1 cut(s)	50
VpaK11BI	GGWCC	1 cut(s)	111
XapI	RAATTY	1 cut(s)	147
XspI	CTAG	2 cut(s)	234, 266

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.