Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb3

Orthogroup ID

OG0005634

Physical Location & Seq

Genomic Coordinates Reverse (-)

30174873 .. 30176674

Gene Structure 1802 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_3g34960.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 816 bp

ATGAAAATGGTGCAAGATCAACAGGAAATCAGAAAGGGACCATGGACAGAACAAGAGGATTTCCAACTGGTGTGCTTTGTGGGCTTGTTTGGAGACCGACGTTGGGATTTCATAGCCAAAGTTTCAGGTTTGAACAGAACCGGCAAGAGTTGCAGGTTGAGGTGGGTTAATTACTTGCACCCTGGCCTCAAAAGAGGCAAGATGACCCCTCAAGAGGAGCGCCTTGTGCTTGAGCTTCACTCCAAATGGGGAAACAGATGGTCAAGAATTGCTAGAAAGCTACCAGGGAGGACTGATAACGAGATCAAGAATTATTGGAGGACTCATATGAGGAAGAAGGCTCAAGAGAAGAAAAGGGCTGTGTCTCCATCATCTTCATCTTCCAACTGTTCATCATCATCAAACATCACCACCAATGAAGGAGGGGCAAGCTTTTATGACACCGGTGGAGTTGAAATGGTGGCTTCATCAGCAGCGAAGAAAAATATCAACGGCGGAGATCAAGAGAAAGAAGATGGTAATGACACTGCTGCTAAAAGGGACCAGAGGGAGTATTCACTTGATGATATATGGAAAGACATCAATCTGCCAGAAGTGAACAGCATTGAACCAGTATATAGTGGCAGCTATGGTGAAGAAGCCTGCAAATTTCCATGCCCTCTAATGGCTACTCCTCCTGCTCCACTGTCATGGGACTCACTGTTCAAAATGGATGAAGATCATGAGAGTAAGAATATGTTTCTGCCTACTACCCCAAGTGACAATCAATTCCTGTCCTGTTTTGAATATGGGAAGGCATCATCTCTAACTGGCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000981 GO:0000988 GO:0000989 GO:0001067 GO:0001076 GO:0001101 GO:0001134 GO:0001135 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0006357 GO:0008150 GO:0009719 GO:0009723 GO:0009725 GO:0009739 GO:0009751 GO:0009753 GO:0009889 GO:0009987 GO:0010033 GO:0010035 GO:0010038 GO:0010200 GO:0010243 GO:0010468 GO:0010556 GO:0014070 GO:0019219 GO:0019222 GO:0030154 GO:0031323 GO:0031326 GO:0032502 GO:0033993 GO:0042221 GO:0042493 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044212 GO:0044424 GO:0044464 GO:0046677 GO:0046686 GO:0048869 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0097159 GO:0140110 GO:1901363 GO:1901698 GO:1901700 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Myb_DNA-binding

Protein Analysis

272

Amino Acids

30.74

Weight (kDa)

8.13

Isoelectric Point (pI)

58.55

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Myb_DNA-binding	PF00249	12 - 59	6e-16	Myb-like DNA-binding domain
Myb_DNA-bind_6	PF13921	15 - 73	1.2e-09	Myb-like DNA-binding domain
Myb_DNA-binding	PF00249	65 - 109	3.8e-18	Myb-like DNA-binding domain
Myb_DNA-bind_6	PF13921	69 - 116	6.9e-07	Myb-like DNA-binding domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0005634)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G46130 AT3G46130 AT3G46130 AT3G46130 AT5G59780
fragaria_vesca	FvH4_3g34960 FvH4_3g34960 FvH4_3g34960
malus_domestica	MD03G1099900.v1.1 MD11G1114000.v1.1 MD11G1114100.v1.1
prunus_persica	Prupe.6G085000_v2.0.a1 Prupe.6G085000_v2.0.a1 Prupe.6G085000_v2.0.a1 Prupe.6G085000_v2.0.a1
pyrus_communis	pycom03g08220
rosa_chinensis	RchiOBHm_Chr5g0062851
rosa_laevigata	RLG00000035584
rosa_multiflora	Rmu_sc0012945.1_g000002
rosa_roxburghii	Rroxscaffold_1G00017790
rosa_rugosa	Rorug05G0352100 Rorug05G0352200 Rorug05G0352300
rosa_samantha	Rh5AG413200 Rh5BG427400 Rh5CG451100 Rh5DG441100
rosa_wichuraiana	Rw5G038820

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	144
AciI	CCGC	1 cut(s)	495
AcsI	RAATTY	1 cut(s)	647
AfiI	CCNNNNNNNGG	3 cut(s)	103, 214, 664
AgeI	ACCGGT	1 cut(s)	443
AgsI	TTSAA	5 cut(s)	133, 455, 608, 706, 785
AjnI	CCWGG	2 cut(s)	181, 283
AloI	GAACNNNNNNTCC	2 cut(s)	686, 718
AluBI	AGCT	4 cut(s)	235, 280, 432, 627
AluI	AGCT	4 cut(s)	235, 280, 432, 627
Alw26I	GTCTC	2 cut(s)	87, 369
AoxI	GGCC	1 cut(s)	184
ApeKI	GCWGC	3 cut(s)	473, 530, 624
ApoI	RAATTY	1 cut(s)	647
AsiGI	ACCGGT	1 cut(s)	443
AspLEI	GCGC	1 cut(s)	222
AspS9I	GGNCC	2 cut(s)	38, 541
AsuHPI	GGTGA	2 cut(s)	400, 644
AvaII	GGWCC	2 cut(s)	38, 541
BbvI	GCAGC	3 cut(s)	485, 517, 636
BccI	CCATC	3 cut(s)	252, 376, 509
BceAI	ACGGC	1 cut(s)	508
BciT130I	CCWGG	2 cut(s)	183, 285
BcoDI	GTCTC	2 cut(s)	87, 369
BfaI	CTAG	1 cut(s)	273
BfoI	RGCGCY	1 cut(s)	223
BfuAI	ACCTGC	1 cut(s)	144
BisI	GCNGC	3 cut(s)	474, 531, 625
BlsI	GCNGC	3 cut(s)	475, 532, 626
Bme1390I	CCNGG	2 cut(s)	183, 285
Bme18I	GGWCC	2 cut(s)	38, 541
BmgT120I	GGNCC	2 cut(s)	38, 541
BmiI	GGNNCC	2 cut(s)	39, 542
BmrFI	CCNGG	2 cut(s)	183, 285
BmsI	GCATC	1 cut(s)	806
BplI	GAGNNNNNCTC	2 cut(s)	224, 256
BpuEI	CTTGAG	3 cut(s)	195, 251, 327
BsaBI	GATNNNNATC	1 cut(s)	717
BsaI	GGTCTC	1 cut(s)	87
BsaJI	CCNNGG	3 cut(s)	41, 181, 284
BsaWI	WCCGGW	1 cut(s)	443
Bsc4I	CCNNNNNNNGG	3 cut(s)	103, 214, 664
Bse118I	RCCGGY	2 cut(s)	140, 443
Bse1I	ACTGG	3 cut(s)	72, 611, 814
Bse8I	GATNNNNATC	1 cut(s)	717
BseBI	CCWGG	2 cut(s)	183, 285
BseDI	CCNNGG	3 cut(s)	41, 181, 284
BseGI	GGATG	1 cut(s)	718
BseJI	GATNNNNATC	1 cut(s)	717
BseLI	CCNNNNNNNGG	3 cut(s)	103, 214, 664
BseNI	ACTGG	3 cut(s)	72, 611, 814
BseRI	GAGGAG	2 cut(s)	230, 663
BseXI	GCAGC	3 cut(s)	485, 517, 636
BshFI	GGCC	1 cut(s)	186
BshTI	ACCGGT	1 cut(s)	443
BsiSI	CCGG	2 cut(s)	141, 444
BslFI	GGGAC	3 cut(s)	51, 554, 707
BslI	CCNNNNNNNGG	3 cut(s)	103, 214, 664
BsmAI	GTCTC	2 cut(s)	87, 369
BsmFI	GGGAC	3 cut(s)	51, 554, 707
BsnI	GGCC	1 cut(s)	186
Bso31I	GGTCTC	1 cut(s)	87
Bsp143I	GATC	4 cut(s)	16, 303, 499, 718
Bsp19I	CCATGG	1 cut(s)	41
BspACI	CCGC	1 cut(s)	495
BspANI	GGCC	1 cut(s)	186
BspHI	TCATGA	1 cut(s)	721
BspLI	GGNNCC	2 cut(s)	39, 542
BspMI	ACCTGC	1 cut(s)	144
BspTNI	GGTCTC	1 cut(s)	87
BsrFI	RCCGGY	2 cut(s)	140, 443
BsrI	ACTGG	3 cut(s)	72, 611, 814
BssAI	RCCGGY	2 cut(s)	140, 443
BssECI	CCNNGG	3 cut(s)	41, 181, 284
BssMI	GATC	4 cut(s)	16, 303, 499, 718
BssT1I	CCWWGG	1 cut(s)	41
Bst2UI	CCWGG	2 cut(s)	183, 285
Bst4CI	ACNGT	3 cut(s)	389, 687, 702
BstAPI	GCANNNNNTGC	1 cut(s)	150
BstC8I	GCNNGC	2 cut(s)	430, 643
BstDSI	CCRYGG	1 cut(s)	41
BstF5I	GGATG	1 cut(s)	718
BstH2I	RGCGCY	1 cut(s)	223
BstHHI	GCGC	1 cut(s)	222
BstKTI	GATC	4 cut(s)	19, 306, 502, 721
BstMAI	GTCTC	2 cut(s)	87, 369
BstMBI	GATC	4 cut(s)	16, 303, 499, 718
BstMWI	GCNNNNNNNGC	4 cut(s)	81, 150, 226, 470
BstNI	CCWGG	2 cut(s)	183, 285
BstSCI	CCNGG	2 cut(s)	181, 283
BstV1I	GCAGC	3 cut(s)	485, 517, 636
BstXI	CCANNNNNNTGG	1 cut(s)	690
BsuRI	GGCC	1 cut(s)	186
BtgI	CCRYGG	1 cut(s)	41
BtsCI	GGATG	1 cut(s)	718
BtsI	GCAGTG	1 cut(s)	525
BtsIMutI	CAGTG	3 cut(s)	525, 683, 698
BveI	ACCTGC	1 cut(s)	144
Cac8I	GCNNGC	2 cut(s)	430, 643
CciI	TCATGA	1 cut(s)	721
CfoI	GCGC	1 cut(s)	222
Cfr10I	RCCGGY	2 cut(s)	140, 443
Cfr13I	GGNCC	2 cut(s)	38, 541
CspAI	ACCGGT	1 cut(s)	443
CviAII	CATG	4 cut(s)	42, 654, 690, 722
DpnI	GATC	4 cut(s)	18, 305, 501, 720
DpnII	GATC	4 cut(s)	16, 303, 499, 718
EciI	GGCGGA	1 cut(s)	510
Eco130I	CCWWGG	1 cut(s)	41
Eco31I	GGTCTC	1 cut(s)	87
Eco47I	GGWCC	2 cut(s)	38, 541
EcoRII	CCWGG	2 cut(s)	181, 283
EcoT14I	CCWWGG	1 cut(s)	41
ErhI	CCWWGG	1 cut(s)	41
FaeI	CATG	4 cut(s)	45, 657, 693, 725
FaqI	GGGAC	3 cut(s)	51, 554, 707
FatI	CATG	4 cut(s)	41, 653, 689, 721
FauNDI	CATATG	1 cut(s)	327
Fnu4HI	GCNGC	3 cut(s)	474, 531, 625
FokI	GGATG	1 cut(s)	725
Fsp4HI	GCNGC	3 cut(s)	474, 531, 625
FspBI	CTAG	1 cut(s)	273
GlaI	GCGC	1 cut(s)	221
GluI	GCNGC	3 cut(s)	474, 531, 625
HaeII	RGCGCY	1 cut(s)	223
HaeIII	GGCC	1 cut(s)	186
HapII	CCGG	2 cut(s)	141, 444
HhaI	GCGC	1 cut(s)	222
Hin1II	CATG	4 cut(s)	45, 657, 693, 725
Hin6I	GCGC	1 cut(s)	220
HinP1I	GCGC	1 cut(s)	220
HindIII	AAGCTT	1 cut(s)	430
HinfI	GANTC	2 cut(s)	322, 695
HpaII	CCGG	2 cut(s)	141, 444
HphI	GGTGA	2 cut(s)	400, 644
Hpy166II	GTNNAC	1 cut(s)	598
Hpy188I	TCNGA	1 cut(s)	32
Hpy188III	TCNNGA	6 cut(s)	212, 264, 307, 344, 503, 722
Hpy8I	GTNNAC	1 cut(s)	598
Hpy99I	CGWCG	1 cut(s)	102
HpyAV	CCTTC	3 cut(s)	331, 413, 787
HpyCH4III	ACNGT	3 cut(s)	389, 687, 702
HpyCH4IV	ACGT	1 cut(s)	100
HpyCH4V	TGCA	4 cut(s)	13, 153, 178, 645
HpyF10VI	GCNNNNNNNGC	4 cut(s)	81, 150, 226, 470
HpySE526I	ACGT	1 cut(s)	100
Hsp92II	CATG	4 cut(s)	45, 657, 693, 725
HspAI	GCGC	1 cut(s)	220
Kzo9I	GATC	4 cut(s)	16, 303, 499, 718
LmnI	GCTCC	2 cut(s)	217, 685
Lsp1109I	GCAGC	3 cut(s)	485, 517, 636
LweI	GCATC	1 cut(s)	806
MaeI	CTAG	1 cut(s)	273
MaeII	ACGT	1 cut(s)	100
MaeIII	GTNAC	1 cut(s)	758
MalI	GATC	4 cut(s)	18, 305, 501, 720
MboI	GATC	4 cut(s)	16, 303, 499, 718
MboII	GAAGA	8 cut(s)	346, 361, 366, 372, 490, 524, 647, 728
MluCI	AATT	5 cut(s)	169, 267, 310, 647, 767
MlyI	GAGTC	2 cut(s)	316, 689
MmeI	TCCRAC	2 cut(s)	88, 408
MseI	TTAA	1 cut(s)	168
MslI	CAYNNNNRTG	1 cut(s)	688
MspI	CCGG	2 cut(s)	141, 444
MspR9I	CCNGG	2 cut(s)	183, 285
MvaI	CCWGG	2 cut(s)	183, 285
MwoI	GCNNNNNNNGC	4 cut(s)	81, 150, 226, 470
NcoI	CCATGG	1 cut(s)	41
NdeI	CATATG	1 cut(s)	327
NdeII	GATC	4 cut(s)	16, 303, 499, 718
NlaIII	CATG	4 cut(s)	45, 657, 693, 725
NlaIV	GGNNCC	2 cut(s)	39, 542
NmuCI	GTSAC	1 cut(s)	758
PagI	TCATGA	1 cut(s)	721
PinAI	ACCGGT	1 cut(s)	443
PkrI	GCNGC	3 cut(s)	475, 532, 626
PleI	GAGTC	2 cut(s)	316, 689
PpsI	GAGTC	2 cut(s)	316, 689
Psp6I	CCWGG	2 cut(s)	181, 283
PspGI	CCWGG	2 cut(s)	181, 283
PspN4I	GGNNCC	2 cut(s)	39, 542
PspPI	GGNCC	2 cut(s)	38, 541
RseI	CAYNNNNRTG	1 cut(s)	688
SaqAI	TTAA	1 cut(s)	168
SatI	GCNGC	3 cut(s)	474, 531, 625
Sau3AI	GATC	4 cut(s)	16, 303, 499, 718
Sau96I	GGNCC	2 cut(s)	38, 541
SchI	GAGTC	2 cut(s)	316, 689
ScrFI	CCNGG	2 cut(s)	183, 285
SetI	ASST	8 cut(s)	103, 130, 158, 164, 237, 282, 434, 629
SfaNI	GCATC	1 cut(s)	806
SgrAI	CRCCGGYG	1 cut(s)	443
SinI	GGWCC	2 cut(s)	38, 541
SmiMI	CAYNNNNRTG	1 cut(s)	688
SmlI	CTYRAG	3 cut(s)	210, 230, 342
SmoI	CTYRAG	3 cut(s)	210, 230, 342
Sse9I	AATT	5 cut(s)	169, 267, 310, 647, 767
SsiI	CCGC	1 cut(s)	495
SspMI	CTAG	1 cut(s)	273
StyD4I	CCNGG	2 cut(s)	181, 283
StyI	CCWWGG	1 cut(s)	41
TaaI	ACNGT	3 cut(s)	389, 687, 702
TaiI	ACGT	1 cut(s)	103
TaqII	GACCGA	1 cut(s)	111
TasI	AATT	5 cut(s)	169, 267, 310, 647, 767
Tru1I	TTAA	1 cut(s)	168
Tru9I	TTAA	1 cut(s)	168
TscAI	CASTG	3 cut(s)	532, 690, 705
TseFI	GTSAC	1 cut(s)	758
TseI	GCWGC	3 cut(s)	473, 530, 624
Tsp45I	GTSAC	1 cut(s)	758
TspDTI	ATGAA	7 cut(s)	17, 100, 366, 381, 432, 456, 729
TspRI	CASTG	3 cut(s)	532, 690, 705
VpaK11BI	GGWCC	2 cut(s)	38, 541
XapI	RAATTY	1 cut(s)	647
XspI	CTAG	1 cut(s)	273

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.