Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr03

Orthogroup ID

OG0005634

Physical Location & Seq

Genomic Coordinates Forward (+)

8546180 .. 8547870

Gene Structure 1691 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD03G1099900.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 681 bp

ATGTATGGTGTGGTTTTGTTACTTGTAGGTTTGAAAAGAACTGGTAAGAGTTGCAGGTTGAGATGGGTTAATTACTTGCATCCTGGCCTCAAAAGAGGAAAGATGACTCCTCAAGAAGAGCGCCTTGTGCTTGAGCTTCACACCAAATGGGGAAATAGGTGGTCACGAATTGCTAGAAAATTACCTGGGAGGACAGACAATGAGATCAAGAACTACTGGAGGACTCATATGAGGAAGAAGGCGCAAGAGAAAAAGAGGGCAGTGTCTCCCTCATCATCTTCTTCCAATTGTTCCTCCTCATCAAACATCACCACAGCTGAAGGAGGGGCAAGCTTCTACGACACCGGTGGGAAGGAAACCAAAGCATTATCAGGAGGAAAGAAAACTGGAGGAGGAGACGACGCGAAAGAAAACGAGAAAAGGGAGCAAGGGGAGTACTCACTAGACGATATATGGAAGGACATCAATCTGCCAGAAGTGAACATTATTGAACCAGTTTATGATGGCAACCTTTCTTCTTGTCCTCTAATGGCTTCTCCAACGCCGTGGGAATACTGTTCCGACTTGCTTTGGAAAATGGATGAAGAAGAAGAGAGTAAGAATATGTTTCTTCCTACACCAAGTGGTGATCACCAATTTCTGTCATGCTATGAATATGGAAAAGCATCTCTAACTGGCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000981 GO:0000988 GO:0000989 GO:0001067 GO:0001076 GO:0001101 GO:0001134 GO:0001135 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0006357 GO:0008150 GO:0009719 GO:0009723 GO:0009725 GO:0009739 GO:0009751 GO:0009753 GO:0009889 GO:0009987 GO:0010033 GO:0010035 GO:0010038 GO:0010200 GO:0010243 GO:0010468 GO:0010556 GO:0014070 GO:0019219 GO:0019222 GO:0030154 GO:0031323 GO:0031326 GO:0032502 GO:0033993 GO:0042221 GO:0042493 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044212 GO:0044424 GO:0044464 GO:0046677 GO:0046686 GO:0048869 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0097159 GO:0140110 GO:1901363 GO:1901698 GO:1901700 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Myb_DNA-binding

Protein Analysis

227

Amino Acids

25.48

Weight (kDa)

8.69

Isoelectric Point (pI)

61.65

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Myb_DNA-binding	PF00249	32 - 76	8.9e-18	Myb-like DNA-binding domain
Myb_DNA-bind_6	PF13921	36 - 83	1.7e-06	Myb-like DNA-binding domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005634)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G46130 AT3G46130 AT3G46130 AT3G46130 AT5G59780
fragaria_vesca	FvH4_3g34960 FvH4_3g34960 FvH4_3g34960
malus_domestica	MD03G1099900.v1.1 MD11G1114000.v1.1 MD11G1114100.v1.1
prunus_persica	Prupe.6G085000_v2.0.a1 Prupe.6G085000_v2.0.a1 Prupe.6G085000_v2.0.a1 Prupe.6G085000_v2.0.a1
pyrus_communis	pycom03g08220
rosa_chinensis	RchiOBHm_Chr5g0062851
rosa_laevigata	RLG00000035584
rosa_multiflora	Rmu_sc0012945.1_g000002
rosa_roxburghii	Rroxscaffold_1G00017790
rosa_rugosa	Rorug05G0352100 Rorug05G0352200 Rorug05G0352300
rosa_samantha	Rh5AG413200 Rh5BG427400 Rh5CG451100 Rh5DG441100
rosa_wichuraiana	Rw5G038820

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	45
AccII	CGCG	1 cut(s)	404
AcuI	CTGAAG	1 cut(s)	339
AdeI	CACNNNGTG	1 cut(s)	623
AfaI	GTAC	1 cut(s)	437
AgeI	ACCGGT	1 cut(s)	344
AgsI	TTSAA	2 cut(s)	34, 491
AjnI	CCWGG	2 cut(s)	82, 184
AluBI	AGCT	3 cut(s)	136, 317, 333
AluI	AGCT	3 cut(s)	136, 317, 333
Alw26I	GTCTC	2 cut(s)	270, 390
AoxI	GGCC	1 cut(s)	85
AsiGI	ACCGGT	1 cut(s)	344
AspLEI	GCGC	2 cut(s)	123, 244
AsuHPI	GGTGA	3 cut(s)	301, 623, 638
BccI	CCATC	2 cut(s)	57, 497
BceAI	ACGGC	1 cut(s)	529
BciT130I	CCWGG	2 cut(s)	84, 186
BclI	TGATCA	1 cut(s)	628
BcoDI	GTCTC	2 cut(s)	270, 390
BfaI	CTAG	2 cut(s)	174, 443
BfoI	RGCGCY	1 cut(s)	124
BfuAI	ACCTGC	1 cut(s)	45
BmcAI	AGTACT	1 cut(s)	437
Bme1390I	CCNGG	2 cut(s)	84, 186
BmrFI	CCNGG	2 cut(s)	84, 186
BmsI	GCATC	2 cut(s)	88, 674
BpmI	CTGGAG	2 cut(s)	238, 408
BpuEI	CTTGAG	2 cut(s)	96, 152
BsaJI	CCNNGG	2 cut(s)	185, 545
BsaWI	WCCGGW	1 cut(s)	344
Bse118I	RCCGGY	1 cut(s)	344
Bse1I	ACTGG	5 cut(s)	46, 221, 391, 494, 679
BseBI	CCWGG	2 cut(s)	84, 186
BseDI	CCNNGG	2 cut(s)	185, 545
BseGI	GGATG	2 cut(s)	79, 586
BseNI	ACTGG	5 cut(s)	46, 221, 391, 494, 679
BseRI	GAGGAG	4 cut(s)	99, 286, 405, 408
Bsh1236I	CGCG	1 cut(s)	404
BshFI	GGCC	1 cut(s)	87
BshTI	ACCGGT	1 cut(s)	344
BsiSI	CCGG	1 cut(s)	345
BsmAI	GTCTC	2 cut(s)	270, 390
BsmBI	CGTCTC	1 cut(s)	390
BsnI	GGCC	1 cut(s)	87
Bsp143I	GATC	2 cut(s)	204, 628
BspANI	GGCC	1 cut(s)	87
BspFNI	CGCG	1 cut(s)	404
BspMI	ACCTGC	1 cut(s)	45
BspQI	GCTCTTC	1 cut(s)	111
BsrFI	RCCGGY	1 cut(s)	344
BsrI	ACTGG	5 cut(s)	46, 221, 391, 494, 679
BssAI	RCCGGY	1 cut(s)	344
BssECI	CCNNGG	2 cut(s)	185, 545
BssMI	GATC	2 cut(s)	204, 628
Bst2UI	CCWGG	2 cut(s)	84, 186
Bst4CI	ACNGT	1 cut(s)	557
Bst6I	CTCTTC	2 cut(s)	111, 585
BstC8I	GCNNGC	1 cut(s)	331
BstDSI	CCRYGG	1 cut(s)	545
BstF5I	GGATG	2 cut(s)	79, 586
BstFNI	CGCG	1 cut(s)	404
BstH2I	RGCGCY	1 cut(s)	124
BstHHI	GCGC	2 cut(s)	123, 244
BstKTI	GATC	2 cut(s)	207, 631
BstMAI	GTCTC	2 cut(s)	270, 390
BstMBI	GATC	2 cut(s)	204, 628
BstMWI	GCNNNNNNNGC	1 cut(s)	127
BstNI	CCWGG	2 cut(s)	84, 186
BstSCI	CCNGG	2 cut(s)	82, 184
BstUI	CGCG	1 cut(s)	404
BstXI	CCANNNNNNTGG	1 cut(s)	546
BsuRI	GGCC	1 cut(s)	87
BtgI	CCRYGG	1 cut(s)	545
BtsCI	GGATG	2 cut(s)	79, 586
BtsI	GCAGTG	1 cut(s)	267
BtsIMutI	CAGTG	1 cut(s)	267
BveI	ACCTGC	1 cut(s)	45
Cac8I	GCNNGC	1 cut(s)	331
CfoI	GCGC	2 cut(s)	123, 244
Cfr10I	RCCGGY	1 cut(s)	344
CseI	GACGC	1 cut(s)	410
Csp6I	GTAC	1 cut(s)	436
CspAI	ACCGGT	1 cut(s)	344
CviAII	CATG	1 cut(s)	645
CviJI	RGCY	6 cut(s)	87, 136, 317, 333, 533, 678
CviKI_1	RGCY	6 cut(s)	87, 136, 317, 333, 533, 678
CviQI	GTAC	1 cut(s)	436
DpnI	GATC	2 cut(s)	206, 630
DpnII	GATC	2 cut(s)	204, 628
DraIII	CACNNNGTG	1 cut(s)	623
Eam1104I	CTCTTC	2 cut(s)	111, 585
EarI	CTCTTC	2 cut(s)	111, 585
Eco57I	CTGAAG	1 cut(s)	339
EcoRII	CCWGG	2 cut(s)	82, 184
Esp3I	CGTCTC	1 cut(s)	390
FaeI	CATG	1 cut(s)	648
FalI	AAGNNNNNCTT	2 cut(s)	108, 140
FatI	CATG	1 cut(s)	644
FauNDI	CATATG	1 cut(s)	228
FbaI	TGATCA	1 cut(s)	628
FokI	GGATG	2 cut(s)	66, 593
FspBI	CTAG	2 cut(s)	174, 443
GlaI	GCGC	2 cut(s)	122, 243
GsuI	CTGGAG	2 cut(s)	238, 408
HaeII	RGCGCY	1 cut(s)	124
HaeIII	GGCC	1 cut(s)	87
HapII	CCGG	1 cut(s)	345
HgaI	GACGC	1 cut(s)	410
HhaI	GCGC	2 cut(s)	123, 244
Hin1II	CATG	1 cut(s)	648
Hin6I	GCGC	2 cut(s)	121, 242
HinP1I	GCGC	2 cut(s)	121, 242
HindIII	AAGCTT	1 cut(s)	331
HinfI	GANTC	2 cut(s)	106, 223
HpaII	CCGG	1 cut(s)	345
HphI	GGTGA	3 cut(s)	301, 623, 638
Hpy166II	GTNNAC	1 cut(s)	481
Hpy188I	TCNGA	1 cut(s)	562
Hpy188III	TCNNGA	4 cut(s)	113, 165, 208, 372
Hpy8I	GTNNAC	1 cut(s)	481
Hpy99I	CGWCG	1 cut(s)	404
HpyAV	CCTTC	4 cut(s)	232, 314, 346, 451
HpyCH4III	ACNGT	1 cut(s)	557
HpyCH4V	TGCA	2 cut(s)	54, 79
HpyF10VI	GCNNNNNNNGC	1 cut(s)	127
Hsp92II	CATG	1 cut(s)	648
HspAI	GCGC	2 cut(s)	121, 242
Ksp22I	TGATCA	1 cut(s)	628
Kzo9I	GATC	2 cut(s)	204, 628
LguI	GCTCTTC	1 cut(s)	111
LmnI	GCTCC	1 cut(s)	424
LweI	GCATC	2 cut(s)	88, 674
MaeI	CTAG	2 cut(s)	174, 443
MaeIII	GTNAC	2 cut(s)	18, 162
MalI	GATC	2 cut(s)	206, 630
MboI	GATC	2 cut(s)	204, 628
MboII	GAAGA	9 cut(s)	128, 247, 270, 273, 507, 596, 599, 602, 602
MfeI	CAATTG	1 cut(s)	286
MluCI	AATT	5 cut(s)	70, 168, 179, 286, 635
MlyI	GAGTC	2 cut(s)	100, 217
MmeI	TCCRAC	2 cut(s)	563, 585
MseI	TTAA	1 cut(s)	69
MspA1I	CMGCKG	1 cut(s)	317
MspI	CCGG	1 cut(s)	345
MspR9I	CCNGG	2 cut(s)	84, 186
MunI	CAATTG	1 cut(s)	286
MvaI	CCWGG	2 cut(s)	84, 186
MvnI	CGCG	1 cut(s)	404
MwoI	GCNNNNNNNGC	1 cut(s)	127
NdeI	CATATG	1 cut(s)	228
NdeII	GATC	2 cut(s)	204, 628
NlaIII	CATG	1 cut(s)	648
NmuCI	GTSAC	1 cut(s)	162
PciSI	GCTCTTC	1 cut(s)	111
PinAI	ACCGGT	1 cut(s)	344
PleI	GAGTC	2 cut(s)	100, 217
PpsI	GAGTC	2 cut(s)	100, 217
Psp6I	CCWGG	2 cut(s)	82, 184
PspGI	CCWGG	2 cut(s)	82, 184
PvuII	CAGCTG	1 cut(s)	317
RsaI	GTAC	1 cut(s)	437
RsaNI	GTAC	1 cut(s)	436
SapI	GCTCTTC	1 cut(s)	111
SaqAI	TTAA	1 cut(s)	69
Sau3AI	GATC	2 cut(s)	204, 628
ScaI	AGTACT	1 cut(s)	437
SchI	GAGTC	2 cut(s)	100, 217
ScrFI	CCNGG	2 cut(s)	84, 186
SetI	ASST	8 cut(s)	31, 59, 138, 161, 187, 319, 335, 513
SfaNI	GCATC	2 cut(s)	88, 674
SgrAI	CRCCGGYG	1 cut(s)	344
SmlI	CTYRAG	2 cut(s)	111, 131
SmoI	CTYRAG	2 cut(s)	111, 131
Sse9I	AATT	5 cut(s)	70, 168, 179, 286, 635
SspMI	CTAG	2 cut(s)	174, 443
StyD4I	CCNGG	2 cut(s)	82, 184
TaaI	ACNGT	1 cut(s)	557
TasI	AATT	5 cut(s)	70, 168, 179, 286, 635
TatI	WGTACW	1 cut(s)	435
Tru1I	TTAA	1 cut(s)	69
Tru9I	TTAA	1 cut(s)	69
TscAI	CASTG	1 cut(s)	267
TseFI	GTSAC	1 cut(s)	162
Tsp45I	GTSAC	1 cut(s)	162
TspDTI	ATGAA	2 cut(s)	597, 666
TspRI	CASTG	1 cut(s)	267
XspI	CTAG	2 cut(s)	174, 443
ZrmI	AGTACT	1 cut(s)	437

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.