Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp06

Orthogroup ID

OG0005634

Physical Location & Seq

Genomic Coordinates Forward (+)

5730798 .. 5732392

Gene Structure 1595 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.6G085000.3

Sequence Viewer

CDS Protein Promoter (2k)

Length: 786 bp

ATGAAAATGGTTCAAGAGGAAAACATCAGAAAGGGCCCATGGACAGAGCAAGAGGACTTCAACCTGGTGTGCTTCGTGGGCTTGTTTGGAGACAGACGTTGGGACTTCATAGCTAAGGTATCAGGTTTGAACAGAACAGGTAAGAGTTGCAGGTTAAGATGGGTTAATTACTTGCACCCTGGCCTCAAAAGAGGCAAGATGACCCCTCAAGAAGAGCGCCTGGTGCTTGAGCTCCACTCCAAATGGGGAAATAGATGGTCAAGAATTGCTAGAAAATTACCTGGGAGGACAGATAATGAGATTAAGAATTACTGGAGGACTCATATGAGGAAGAAGGCACAAGAGAAAAAGAGGGCTGCATCCCCATCATCATCTTCTTCCAACTGTTCTTCATCCTCAAACATCACCTCAACTGAAGGAGGAGCAAGCTTTTATGACACGGGTGGGCTTGAAATCAAGGCATCATCAGGAGCAAAGAAAACTGGTGGAGATCATCAGGAGCAAGAAGATGATAAAAAAAGGGACCAAAAGGAGTACTCACTTGATGATATATGGAAGGATATCAATCTGCCAGAAGTGAACAGTATTGAACCAGTTTACAATGGCTATAGTGAAGAAGCCTGCAACATTATTTCTTGCCCATTAATGGCTTCTCCAGCACCATGGGAGTATTGCTCTGACTCTCTATGGGAAATGGATGAAGAGGAAAGTAAGATGTTTCTCCCAACTACAAGTGACCAATTTCTGTCCTGTTTTGAATATGGAAAAGCATCTCTAATTGGCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000981 GO:0000988 GO:0000989 GO:0001067 GO:0001076 GO:0001101 GO:0001134 GO:0001135 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0006357 GO:0008150 GO:0009719 GO:0009723 GO:0009725 GO:0009739 GO:0009751 GO:0009753 GO:0009889 GO:0009987 GO:0010033 GO:0010035 GO:0010038 GO:0010200 GO:0010243 GO:0010468 GO:0010556 GO:0014070 GO:0019219 GO:0019222 GO:0030154 GO:0031323 GO:0031326 GO:0032502 GO:0033993 GO:0042221 GO:0042493 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044212 GO:0044424 GO:0044464 GO:0046677 GO:0046686 GO:0048869 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0097159 GO:0140110 GO:1901363 GO:1901698 GO:1901700 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Myb_DNA-binding

Protein Analysis

262

Amino Acids

29.85

Weight (kDa)

6.47

Isoelectric Point (pI)

69.3

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0005634)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G46130 AT3G46130 AT3G46130 AT3G46130 AT5G59780
fragaria_vesca	FvH4_3g34960 FvH4_3g34960 FvH4_3g34960
malus_domestica	MD03G1099900.v1.1 MD11G1114000.v1.1 MD11G1114100.v1.1
prunus_persica	Prupe.6G085000_v2.0.a1 Prupe.6G085000_v2.0.a1 Prupe.6G085000_v2.0.a1 Prupe.6G085000_v2.0.a1
pyrus_communis	pycom03g08220
rosa_chinensis	RchiOBHm_Chr5g0062851
rosa_laevigata	RLG00000035584
rosa_multiflora	Rmu_sc0012945.1_g000002
rosa_roxburghii	Rroxscaffold_1G00017790
rosa_rugosa	Rorug05G0352100 Rorug05G0352200 Rorug05G0352300
rosa_samantha	Rh5AG413200 Rh5BG427400 Rh5CG451100 Rh5DG441100
rosa_wichuraiana	Rw5G038820

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	141
AcuI	CTGAAG	1 cut(s)	435
AfaI	GTAC	1 cut(s)	536
AfiI	CCNNNNNNNGG	1 cut(s)	646
AgsI	TTSAA	6 cut(s)	14, 61, 130, 452, 590, 758
AjnI	CCWGG	4 cut(s)	63, 178, 219, 280
AluBI	AGCT	3 cut(s)	113, 232, 429
AluI	AGCT	3 cut(s)	113, 232, 429
Alw21I	GWGCWC	1 cut(s)	234
Alw26I	GTCTC	1 cut(s)	84
AoxI	GGCC	2 cut(s)	34, 181
ApaI	GGGCCC	1 cut(s)	38
ApeKI	GCWGC	1 cut(s)	356
AseI	ATTAAT	1 cut(s)	644
AspLEI	GCGC	1 cut(s)	219
AspS9I	GGNCC	3 cut(s)	34, 35, 523
AsuHPI	GGTGA	1 cut(s)	397
AvaII	GGWCC	1 cut(s)	523
BaeGI	GKGCMC	1 cut(s)	38
BanII	GRGCYC	2 cut(s)	38, 234
Bbv12I	GWGCWC	1 cut(s)	234
BbvI	GCAGC	1 cut(s)	343
BccI	CCATC	3 cut(s)	153, 249, 373
BciT130I	CCWGG	4 cut(s)	65, 180, 221, 282
BcoDI	GTCTC	1 cut(s)	84
BfaI	CTAG	1 cut(s)	270
BfmI	CTRYAG	1 cut(s)	607
BfoI	RGCGCY	1 cut(s)	220
BfuAI	ACCTGC	1 cut(s)	141
BisI	GCNGC	1 cut(s)	357
BlsI	GCNGC	1 cut(s)	358
BmcAI	AGTACT	1 cut(s)	536
Bme1390I	CCNGG	4 cut(s)	65, 180, 221, 282
Bme18I	GGWCC	1 cut(s)	523
BmgT120I	GGNCC	3 cut(s)	34, 35, 523
BmiI	GGNNCC	2 cut(s)	36, 524
BmrFI	CCNGG	4 cut(s)	65, 180, 221, 282
BmsI	GCATC	3 cut(s)	368, 470, 779
BplI	GAGNNNNNCTC	4 cut(s)	221, 253, 659, 691
BpmI	CTGGAG	2 cut(s)	334, 639
Bpu10I	CCTNAGC	1 cut(s)	114
BpuEI	CTTGAG	2 cut(s)	192, 248
BsaBI	GATNNNNATC	1 cut(s)	564
BsaJI	CCNNGG	4 cut(s)	38, 178, 281, 662
Bsc4I	CCNNNNNNNGG	1 cut(s)	646
Bse1I	ACTGG	3 cut(s)	317, 487, 593
Bse8I	GATNNNNATC	1 cut(s)	564
BseBI	CCWGG	4 cut(s)	65, 180, 221, 282
BseDI	CCNNGG	4 cut(s)	38, 178, 281, 662
BseGI	GGATG	3 cut(s)	359, 392, 703
BseJI	GATNNNNATC	1 cut(s)	564
BseLI	CCNNNNNNNGG	1 cut(s)	646
BseNI	ACTGG	3 cut(s)	317, 487, 593
BseRI	GAGGAG	1 cut(s)	435
BseSI	GKGCMC	1 cut(s)	38
BseXI	GCAGC	1 cut(s)	343
BshFI	GGCC	2 cut(s)	36, 183
BsiHKAI	GWGCWC	1 cut(s)	234
BslFI	GGGAC	2 cut(s)	116, 536
BslI	CCNNNNNNNGG	1 cut(s)	646
BsmAI	GTCTC	1 cut(s)	84
BsmFI	GGGAC	2 cut(s)	116, 536
BsnI	GGCC	2 cut(s)	36, 183
Bsp120I	GGGCCC	1 cut(s)	34
Bsp1286I	GDGCHC	2 cut(s)	38, 234
Bsp143I	GATC	1 cut(s)	490
Bsp19I	CCATGG	2 cut(s)	38, 662
BspANI	GGCC	2 cut(s)	36, 183
BspLI	GGNNCC	2 cut(s)	36, 524
BspMI	ACCTGC	1 cut(s)	141
BspQI	GCTCTTC	1 cut(s)	207
BsrI	ACTGG	3 cut(s)	317, 487, 593
BssECI	CCNNGG	4 cut(s)	38, 178, 281, 662
BssMI	GATC	1 cut(s)	490
BssT1I	CCWWGG	2 cut(s)	38, 662
Bst2UI	CCWGG	4 cut(s)	65, 180, 221, 282
Bst4CI	ACNGT	2 cut(s)	386, 584
Bst6I	CTCTTC	2 cut(s)	207, 696
BstC8I	GCNNGC	2 cut(s)	427, 622
BstDEI	CTNAG	1 cut(s)	114
BstDSI	CCRYGG	2 cut(s)	38, 662
BstF5I	GGATG	3 cut(s)	359, 392, 703
BstH2I	RGCGCY	1 cut(s)	220
BstHHI	GCGC	1 cut(s)	219
BstKTI	GATC	1 cut(s)	493
BstMAI	GTCTC	1 cut(s)	84
BstMBI	GATC	1 cut(s)	490
BstMWI	GCNNNNNNNGC	3 cut(s)	78, 223, 656
BstNI	CCWGG	4 cut(s)	65, 180, 221, 282
BstSCI	CCNGG	4 cut(s)	63, 178, 219, 280
BstSFI	CTRYAG	1 cut(s)	607
BstSLI	GKGCMC	1 cut(s)	38
BstV1I	GCAGC	1 cut(s)	343
BstXI	CCANNNNNNTGG	1 cut(s)	663
BsuRI	GGCC	2 cut(s)	36, 183
BtgI	CCRYGG	2 cut(s)	38, 662
BtsCI	GGATG	3 cut(s)	359, 392, 703
BveI	ACCTGC	1 cut(s)	141
Cac8I	GCNNGC	2 cut(s)	427, 622
CfoI	GCGC	1 cut(s)	219
Cfr13I	GGNCC	3 cut(s)	34, 35, 523
CsiI	ACCWGGT	1 cut(s)	63
Csp6I	GTAC	1 cut(s)	535
CviAII	CATG	2 cut(s)	39, 663
CviQI	GTAC	1 cut(s)	535
DdeI	CTNAG	1 cut(s)	114
DpnI	GATC	1 cut(s)	492
DpnII	GATC	1 cut(s)	490
Eam1104I	CTCTTC	2 cut(s)	207, 696
EarI	CTCTTC	2 cut(s)	207, 696
Ecl136II	GAGCTC	1 cut(s)	232
Eco130I	CCWWGG	2 cut(s)	38, 662
Eco24I	GRGCYC	2 cut(s)	38, 234
Eco32I	GATATC	1 cut(s)	562
Eco47I	GGWCC	1 cut(s)	523
Eco53kI	GAGCTC	1 cut(s)	232
Eco57I	CTGAAG	1 cut(s)	435
EcoICRI	GAGCTC	1 cut(s)	232
EcoO109I	RGGNCCY	1 cut(s)	34
EcoRII	CCWGG	4 cut(s)	63, 178, 219, 280
EcoRV	GATATC	1 cut(s)	562
EcoT14I	CCWWGG	2 cut(s)	38, 662
EcoT38I	GRGCYC	2 cut(s)	38, 234
ErhI	CCWWGG	2 cut(s)	38, 662
FaeI	CATG	2 cut(s)	42, 666
FaqI	GGGAC	2 cut(s)	116, 536
FatI	CATG	2 cut(s)	38, 662
FauNDI	CATATG	1 cut(s)	324
Fnu4HI	GCNGC	1 cut(s)	357
FokI	GGATG	3 cut(s)	346, 379, 710
FriOI	GRGCYC	2 cut(s)	38, 234
Fsp4HI	GCNGC	1 cut(s)	357
FspBI	CTAG	1 cut(s)	270
GlaI	GCGC	1 cut(s)	218
GluI	GCNGC	1 cut(s)	357
GsuI	CTGGAG	2 cut(s)	334, 639
HaeII	RGCGCY	1 cut(s)	220
HaeIII	GGCC	2 cut(s)	36, 183
HhaI	GCGC	1 cut(s)	219
Hin1II	CATG	2 cut(s)	42, 666
Hin6I	GCGC	1 cut(s)	217
HinP1I	GCGC	1 cut(s)	217
HindIII	AAGCTT	1 cut(s)	427
HinfI	GANTC	2 cut(s)	319, 680
HphI	GGTGA	1 cut(s)	397
Hpy166II	GTNNAC	2 cut(s)	580, 598
Hpy188I	TCNGA	2 cut(s)	29, 679
Hpy188III	TCNNGA	5 cut(s)	14, 209, 261, 468, 497
Hpy8I	GTNNAC	2 cut(s)	580, 598
HpyAV	CCTTC	3 cut(s)	328, 410, 550
HpyCH4III	ACNGT	2 cut(s)	386, 584
HpyCH4IV	ACGT	1 cut(s)	97
HpyCH4V	TGCA	4 cut(s)	150, 175, 359, 624
HpyF10VI	GCNNNNNNNGC	3 cut(s)	78, 223, 656
HpyF3I	CTNAG	1 cut(s)	114
HpySE526I	ACGT	1 cut(s)	97
Hsp92II	CATG	2 cut(s)	42, 666
HspAI	GCGC	1 cut(s)	217
Kzo9I	GATC	1 cut(s)	490
LguI	GCTCTTC	1 cut(s)	207
LmnI	GCTCC	4 cut(s)	237, 422, 470, 499
Lsp1109I	GCAGC	1 cut(s)	343
LweI	GCATC	3 cut(s)	368, 470, 779
MabI	ACCWGGT	1 cut(s)	63
MaeI	CTAG	1 cut(s)	270
MaeII	ACGT	1 cut(s)	97
MaeIII	GTNAC	1 cut(s)	734
MalI	GATC	1 cut(s)	492
MboI	GATC	1 cut(s)	490
MboII	GAAGA	8 cut(s)	224, 343, 366, 369, 381, 518, 626, 713
MhlI	GDGCHC	2 cut(s)	38, 234
MluCI	AATT	6 cut(s)	166, 264, 275, 307, 740, 777
MlyI	GAGTC	2 cut(s)	313, 674
MmeI	TCCRAC	1 cut(s)	405
MseI	TTAA	4 cut(s)	155, 165, 303, 644
MspR9I	CCNGG	4 cut(s)	65, 180, 221, 282
MvaI	CCWGG	4 cut(s)	65, 180, 221, 282
MwoI	GCNNNNNNNGC	3 cut(s)	78, 223, 656
NcoI	CCATGG	2 cut(s)	38, 662
NdeI	CATATG	1 cut(s)	324
NdeII	GATC	1 cut(s)	490
NlaIII	CATG	2 cut(s)	42, 666
NlaIV	GGNNCC	2 cut(s)	36, 524
NmuCI	GTSAC	1 cut(s)	734
PciSI	GCTCTTC	1 cut(s)	207
PkrI	GCNGC	1 cut(s)	358
PleI	GAGTC	2 cut(s)	313, 674
PpsI	GAGTC	2 cut(s)	313, 674
PshBI	ATTAAT	1 cut(s)	644
Psp124BI	GAGCTC	1 cut(s)	234
Psp6I	CCWGG	4 cut(s)	63, 178, 219, 280
PspGI	CCWGG	4 cut(s)	63, 178, 219, 280
PspN4I	GGNNCC	2 cut(s)	36, 524
PspOMI	GGGCCC	1 cut(s)	34
PspPI	GGNCC	3 cut(s)	34, 35, 523
RsaI	GTAC	1 cut(s)	536
RsaNI	GTAC	1 cut(s)	535
SacI	GAGCTC	1 cut(s)	234
SapI	GCTCTTC	1 cut(s)	207
SaqAI	TTAA	4 cut(s)	155, 165, 303, 644
SatI	GCNGC	1 cut(s)	357
Sau3AI	GATC	1 cut(s)	490
Sau96I	GGNCC	3 cut(s)	34, 35, 523
ScaI	AGTACT	1 cut(s)	536
SchI	GAGTC	2 cut(s)	313, 674
ScrFI	CCNGG	4 cut(s)	65, 180, 221, 282
SduI	GDGCHC	2 cut(s)	38, 234
SexAI	ACCWGGT	1 cut(s)	63
SfaNI	GCATC	3 cut(s)	368, 470, 779
SfcI	CTRYAG	1 cut(s)	607
SinI	GGWCC	1 cut(s)	523
SmlI	CTYRAG	2 cut(s)	207, 227
SmoI	CTYRAG	2 cut(s)	207, 227
Sse9I	AATT	6 cut(s)	166, 264, 275, 307, 740, 777
SspMI	CTAG	1 cut(s)	270
SstI	GAGCTC	1 cut(s)	234
StyD4I	CCNGG	4 cut(s)	63, 178, 219, 280
StyI	CCWWGG	2 cut(s)	38, 662
TaaI	ACNGT	2 cut(s)	386, 584
TaiI	ACGT	1 cut(s)	100
TasI	AATT	6 cut(s)	166, 264, 275, 307, 740, 777
TatI	WGTACW	1 cut(s)	534
Tru1I	TTAA	4 cut(s)	155, 165, 303, 644
Tru9I	TTAA	4 cut(s)	155, 165, 303, 644
TseFI	GTSAC	1 cut(s)	734
TseI	GCWGC	1 cut(s)	356
Tsp45I	GTSAC	1 cut(s)	734
TspDTI	ATGAA	4 cut(s)	17, 97, 381, 714
VpaK11BI	GGWCC	1 cut(s)	523
VspI	ATTAAT	1 cut(s)	644
XspI	CTAG	1 cut(s)	270
ZrmI	AGTACT	1 cut(s)	536

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.