Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr3

Orthogroup ID

OG0005634

Physical Location & Seq

Genomic Coordinates Forward (+)

6627137 .. 6628309

Gene Structure 1173 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom03g08220.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 780 bp

ATGAAAATGGTGCAAGATCAAGAACAAATCAGAAGGGGGCCATGGACTGAGCAAGAGGACTTCCAGCTGGTGTGCTTTGTGGGCCTGTTTGGAGACAGGCGATGGGATTTCATAGCCAAAGTTTCAGGTAAGAGTTGCAGGTTAAGATGGGTTAATTACTTGCATCCTGGCCTCAAAAGAGGAAAGATGACTCCTCAAGAAGAGCGCCTTGTGCTTGAGCTTCACACCAAATGGGGAAATAGGTGGTCAAGAATTGCTAGAAAATTACCTGGGAGGACAGACAATCCCTCTTATTTAGGATCGATCAAGAATTACTGGAGGACTCATATGAGGAAGAAGGCGCAAGAGAAAAAGAGGGCAGTATCTCCCTCATCATCTTATTCCAATTGTTCCTCCTCATCAAACATCACCACAGCTGAAGGAGGGGCAAGCTTCTACGACACCGGTGGGAAGGAAACCAAAGCATCATCAGGAGGAAAGAAAACTGGAGGAGGAGACGAAGCGAAAGAAGACGAGAAAAGGGAGCAAAGGGAGTACTCACTAGACGATATATGGAAGGACATCAATCTGCCAGAAGTGAACATTATTGAACCAGTTTATGATGGCAACCTTTCTTCTTGTCCTCTAATGGCTTCTCCGACGCCGTGGGAATACTGTTCCGACTTGCTTTGGAAAATGGATGAAGAAGAAGAGAGTAAGAATATGTTTCTTCCTACACCAAGTGGTGATCACCAATTTCTATCATGCTATGAATATGGAAAAGCATCTCTGACTGGCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000981 GO:0000988 GO:0000989 GO:0001067 GO:0001076 GO:0001101 GO:0001134 GO:0001135 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0006357 GO:0008150 GO:0009719 GO:0009723 GO:0009725 GO:0009739 GO:0009751 GO:0009753 GO:0009889 GO:0009987 GO:0010033 GO:0010035 GO:0010038 GO:0010200 GO:0010243 GO:0010468 GO:0010556 GO:0014070 GO:0019219 GO:0019222 GO:0030154 GO:0031323 GO:0031326 GO:0032502 GO:0033993 GO:0042221 GO:0042493 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044212 GO:0044424 GO:0044464 GO:0046677 GO:0046686 GO:0048869 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0097159 GO:0140110 GO:1901363 GO:1901698 GO:1901700 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Myb_DNA-binding

Protein Analysis

260

Amino Acids

29.64

Weight (kDa)

8.12

Isoelectric Point (pI)

64.94

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005634)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G46130 AT3G46130 AT3G46130 AT3G46130 AT5G59780
fragaria_vesca	FvH4_3g34960 FvH4_3g34960 FvH4_3g34960
malus_domestica	MD03G1099900.v1.1 MD11G1114000.v1.1 MD11G1114100.v1.1
prunus_persica	Prupe.6G085000_v2.0.a1 Prupe.6G085000_v2.0.a1 Prupe.6G085000_v2.0.a1 Prupe.6G085000_v2.0.a1
pyrus_communis	pycom03g08220
rosa_chinensis	RchiOBHm_Chr5g0062851
rosa_laevigata	RLG00000035584
rosa_multiflora	Rmu_sc0012945.1_g000002
rosa_roxburghii	Rroxscaffold_1G00017790
rosa_rugosa	Rorug05G0352100 Rorug05G0352200 Rorug05G0352300
rosa_samantha	Rh5AG413200 Rh5BG427400 Rh5CG451100 Rh5DG441100
rosa_wichuraiana	Rw5G038820

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	129
AclWI	GGATC	1 cut(s)	307
AcuI	CTGAAG	1 cut(s)	438
AcyI	GRCGYC	1 cut(s)	641
AdeI	CACNNNGTG	1 cut(s)	722
AfaI	GTAC	1 cut(s)	536
AgeI	ACCGGT	1 cut(s)	443
AgsI	TTSAA	1 cut(s)	590
AjnI	CCWGG	2 cut(s)	166, 268
AluBI	AGCT	4 cut(s)	67, 220, 416, 432
AluI	AGCT	4 cut(s)	67, 220, 416, 432
Alw26I	GTCTC	2 cut(s)	87, 489
AlwI	GGATC	1 cut(s)	307
AoxI	GGCC	3 cut(s)	38, 82, 169
AsiGI	ACCGGT	1 cut(s)	443
AspLEI	GCGC	2 cut(s)	207, 343
AspS9I	GGNCC	2 cut(s)	38, 82
AsuHPI	GGTGA	3 cut(s)	400, 722, 737
BbsI	GAAGAC	1 cut(s)	516
BccI	CCATC	3 cut(s)	96, 141, 596
BceAI	ACGGC	1 cut(s)	628
BciT130I	CCWGG	2 cut(s)	168, 270
BclI	TGATCA	1 cut(s)	727
BcoDI	GTCTC	2 cut(s)	87, 489
BfaI	CTAG	2 cut(s)	258, 542
BfoI	RGCGCY	1 cut(s)	208
BfuAI	ACCTGC	1 cut(s)	129
BmcAI	AGTACT	1 cut(s)	536
Bme1390I	CCNGG	2 cut(s)	168, 270
BmgT120I	GGNCC	2 cut(s)	38, 82
BmiI	GGNNCC	1 cut(s)	39
BmrFI	CCNGG	2 cut(s)	168, 270
BmsI	GCATC	3 cut(s)	172, 473, 773
BpiI	GAAGAC	1 cut(s)	516
BpmI	CTGGAG	2 cut(s)	337, 507
BpuEI	CTTGAG	2 cut(s)	180, 236
Bsa29I	ATCGAT	1 cut(s)	302
BsaHI	GRCGYC	1 cut(s)	641
BsaJI	CCNNGG	3 cut(s)	41, 269, 644
BsaWI	WCCGGW	1 cut(s)	443
Bse118I	RCCGGY	1 cut(s)	443
Bse1I	ACTGG	4 cut(s)	320, 490, 593, 778
BseBI	CCWGG	2 cut(s)	168, 270
BseCI	ATCGAT	1 cut(s)	302
BseDI	CCNNGG	3 cut(s)	41, 269, 644
BseGI	GGATG	2 cut(s)	163, 685
BseMII	CTCAG	1 cut(s)	39
BseNI	ACTGG	4 cut(s)	320, 490, 593, 778
BseRI	GAGGAG	4 cut(s)	183, 385, 504, 507
BshFI	GGCC	3 cut(s)	40, 84, 171
BshTI	ACCGGT	1 cut(s)	443
BshVI	ATCGAT	1 cut(s)	302
BsiSI	CCGG	1 cut(s)	444
BsmAI	GTCTC	2 cut(s)	87, 489
BsmBI	CGTCTC	1 cut(s)	489
BsnI	GGCC	3 cut(s)	40, 84, 171
Bsp143I	GATC	4 cut(s)	16, 299, 303, 727
Bsp19I	CCATGG	1 cut(s)	41
BspANI	GGCC	3 cut(s)	40, 84, 171
BspCNI	CTCAG	1 cut(s)	40
BspDI	ATCGAT	1 cut(s)	302
BspLI	GGNNCC	1 cut(s)	39
BspMI	ACCTGC	1 cut(s)	129
BspPI	GGATC	1 cut(s)	307
BspQI	GCTCTTC	1 cut(s)	195
BsrFI	RCCGGY	1 cut(s)	443
BsrI	ACTGG	4 cut(s)	320, 490, 593, 778
BssAI	RCCGGY	1 cut(s)	443
BssECI	CCNNGG	3 cut(s)	41, 269, 644
BssMI	GATC	4 cut(s)	16, 299, 303, 727
BssNI	GRCGYC	1 cut(s)	641
BssT1I	CCWWGG	1 cut(s)	41
Bst2UI	CCWGG	2 cut(s)	168, 270
Bst4CI	ACNGT	1 cut(s)	656
Bst6I	CTCTTC	2 cut(s)	195, 684
BstACI	GRCGYC	1 cut(s)	641
BstC8I	GCNNGC	1 cut(s)	430
BstDEI	CTNAG	1 cut(s)	48
BstDSI	CCRYGG	2 cut(s)	41, 644
BstF5I	GGATG	2 cut(s)	163, 685
BstH2I	RGCGCY	1 cut(s)	208
BstHHI	GCGC	2 cut(s)	207, 343
BstKTI	GATC	4 cut(s)	19, 302, 306, 730
BstMAI	GTCTC	2 cut(s)	87, 489
BstMBI	GATC	4 cut(s)	16, 299, 303, 727
BstMWI	GCNNNNNNNGC	2 cut(s)	81, 211
BstNI	CCWGG	2 cut(s)	168, 270
BstSCI	CCNGG	2 cut(s)	166, 268
BstV2I	GAAGAC	1 cut(s)	516
Bsu15I	ATCGAT	1 cut(s)	302
BsuRI	GGCC	3 cut(s)	40, 84, 171
BsuTUI	ATCGAT	1 cut(s)	302
BtgI	CCRYGG	2 cut(s)	41, 644
BtgZI	GCGATG	1 cut(s)	115
BtsCI	GGATG	2 cut(s)	163, 685
BveI	ACCTGC	1 cut(s)	129
Cac8I	GCNNGC	1 cut(s)	430
CfoI	GCGC	2 cut(s)	207, 343
Cfr10I	RCCGGY	1 cut(s)	443
Cfr13I	GGNCC	2 cut(s)	38, 82
ClaI	ATCGAT	1 cut(s)	302
CseI	GACGC	1 cut(s)	649
Csp6I	GTAC	1 cut(s)	535
CspAI	ACCGGT	1 cut(s)	443
CviAII	CATG	2 cut(s)	42, 744
CviQI	GTAC	1 cut(s)	535
DdeI	CTNAG	1 cut(s)	48
DpnI	GATC	4 cut(s)	18, 301, 305, 729
DpnII	GATC	4 cut(s)	16, 299, 303, 727
DraIII	CACNNNGTG	1 cut(s)	722
Eam1104I	CTCTTC	2 cut(s)	195, 684
EarI	CTCTTC	2 cut(s)	195, 684
Eco130I	CCWWGG	1 cut(s)	41
Eco57I	CTGAAG	1 cut(s)	438
EcoRII	CCWGG	2 cut(s)	166, 268
EcoT14I	CCWWGG	1 cut(s)	41
ErhI	CCWWGG	1 cut(s)	41
Esp3I	CGTCTC	1 cut(s)	489
FaeI	CATG	2 cut(s)	45, 747
FalI	AAGNNNNNCTT	2 cut(s)	192, 224
FatI	CATG	2 cut(s)	41, 743
FauNDI	CATATG	1 cut(s)	327
FbaI	TGATCA	1 cut(s)	727
FokI	GGATG	2 cut(s)	150, 692
FspBI	CTAG	2 cut(s)	258, 542
GlaI	GCGC	2 cut(s)	206, 342
GsuI	CTGGAG	2 cut(s)	337, 507
HaeII	RGCGCY	1 cut(s)	208
HaeIII	GGCC	3 cut(s)	40, 84, 171
HapII	CCGG	1 cut(s)	444
HgaI	GACGC	1 cut(s)	649
HhaI	GCGC	2 cut(s)	207, 343
Hin1I	GRCGYC	1 cut(s)	641
Hin1II	CATG	2 cut(s)	45, 747
Hin6I	GCGC	2 cut(s)	205, 341
HinP1I	GCGC	2 cut(s)	205, 341
HindIII	AAGCTT	1 cut(s)	430
HinfI	GANTC	2 cut(s)	190, 322
HpaII	CCGG	1 cut(s)	444
HphI	GGTGA	3 cut(s)	400, 722, 737
Hpy166II	GTNNAC	1 cut(s)	580
Hpy188I	TCNGA	4 cut(s)	32, 639, 661, 771
Hpy188III	TCNNGA	5 cut(s)	20, 197, 249, 307, 471
Hpy8I	GTNNAC	1 cut(s)	580
Hpy99I	CGWCG	1 cut(s)	643
HpyAV	CCTTC	5 cut(s)	27, 331, 413, 445, 550
HpyCH4III	ACNGT	1 cut(s)	656
HpyCH4V	TGCA	3 cut(s)	13, 138, 163
HpyF10VI	GCNNNNNNNGC	2 cut(s)	81, 211
HpyF3I	CTNAG	1 cut(s)	48
Hsp92I	GRCGYC	1 cut(s)	641
Hsp92II	CATG	2 cut(s)	45, 747
HspAI	GCGC	2 cut(s)	205, 341
Ksp22I	TGATCA	1 cut(s)	727
Kzo9I	GATC	4 cut(s)	16, 299, 303, 727
LguI	GCTCTTC	1 cut(s)	195
LmnI	GCTCC	1 cut(s)	523
LweI	GCATC	3 cut(s)	172, 473, 773
MaeI	CTAG	2 cut(s)	258, 542
MalI	GATC	4 cut(s)	18, 301, 305, 729
MboI	GATC	4 cut(s)	16, 299, 303, 727
MboII	GAAGA	8 cut(s)	212, 346, 521, 606, 695, 698, 701, 701
MfeI	CAATTG	1 cut(s)	385
MluCI	AATT	6 cut(s)	154, 252, 263, 310, 385, 734
MlyI	GAGTC	2 cut(s)	184, 316
MmeI	TCCRAC	2 cut(s)	662, 684
MseI	TTAA	2 cut(s)	143, 153
MspA1I	CMGCKG	2 cut(s)	67, 416
MspI	CCGG	1 cut(s)	444
MspR9I	CCNGG	2 cut(s)	168, 270
MunI	CAATTG	1 cut(s)	385
MvaI	CCWGG	2 cut(s)	168, 270
MwoI	GCNNNNNNNGC	2 cut(s)	81, 211
NcoI	CCATGG	1 cut(s)	41
NdeI	CATATG	1 cut(s)	327
NdeII	GATC	4 cut(s)	16, 299, 303, 727
NlaIII	CATG	2 cut(s)	45, 747
NlaIV	GGNNCC	1 cut(s)	39
PciSI	GCTCTTC	1 cut(s)	195
PinAI	ACCGGT	1 cut(s)	443
PleI	GAGTC	2 cut(s)	184, 316
PpsI	GAGTC	2 cut(s)	184, 316
Psp6I	CCWGG	2 cut(s)	166, 268
PspGI	CCWGG	2 cut(s)	166, 268
PspN4I	GGNNCC	1 cut(s)	39
PspPI	GGNCC	2 cut(s)	38, 82
PvuII	CAGCTG	2 cut(s)	67, 416
RsaI	GTAC	1 cut(s)	536
RsaNI	GTAC	1 cut(s)	535
SapI	GCTCTTC	1 cut(s)	195
SaqAI	TTAA	2 cut(s)	143, 153
Sau3AI	GATC	4 cut(s)	16, 299, 303, 727
Sau96I	GGNCC	2 cut(s)	38, 82
ScaI	AGTACT	1 cut(s)	536
SchI	GAGTC	2 cut(s)	184, 316
ScrFI	CCNGG	2 cut(s)	168, 270
SetI	ASST	9 cut(s)	69, 130, 143, 222, 245, 271, 418, 434, 612
SfaNI	GCATC	3 cut(s)	172, 473, 773
SgrAI	CRCCGGYG	1 cut(s)	443
SmlI	CTYRAG	2 cut(s)	195, 215
SmoI	CTYRAG	2 cut(s)	195, 215
Sse9I	AATT	6 cut(s)	154, 252, 263, 310, 385, 734
SspMI	CTAG	2 cut(s)	258, 542
StyD4I	CCNGG	2 cut(s)	166, 268
StyI	CCWWGG	1 cut(s)	41
TaaI	ACNGT	1 cut(s)	656
TaqI	TCGA	1 cut(s)	302
TasI	AATT	6 cut(s)	154, 252, 263, 310, 385, 734
TatI	WGTACW	1 cut(s)	534
Tru1I	TTAA	2 cut(s)	143, 153
Tru9I	TTAA	2 cut(s)	143, 153
TspDTI	ATGAA	4 cut(s)	17, 100, 696, 765
XspI	CTAG	2 cut(s)	258, 542
ZrmI	AGTACT	1 cut(s)	536

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.