AT3G48070

RING/Ubox like zinc-binding domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
3
OG0005751
Physical Location & Seq
Forward (+)
17750710 .. 17752965
2256 bp
Loading structure...
UTR
Exon/CDS
Intron
AT3G48070.2

Sequence Viewer

Length: 960 bp
ATGATTTCTGATTCGATCACCAACGCTTCTGCTACTTCAGCTCCAACCGCCAGGGATTTCGGAAAAAAGAAAAGGACGAACAGGTCGGCCAAATTGAAACAGAGCAAGCTAGGTCTTCGTCGTGAACAATGGCTTTCTCAAGTTGCGATGATTAACAAAGGGGATAAGGAGGAAATGGAATCCAATCGAAGAATTGGGAGTGAAAAGCCTGATCAGAGAGATCTTCCGCGTCCGGTGGAGAATTTAGATGAGGATAACAATGGAACACATCGTCATGAGAGCTTTATTGAGTCACTTTCTAATAGCCCTAACAGTATTCTTAGTGGCATGAATTCAATTCCTAATTTTAGCAGCAGCAGTAGCAGTGGAAGTGGTGGCTCTTGCTCTGGTAATATAACAGAGGAGGAAGATGCTGATGATGATGGTTGTTTGGATGATTGGGAAGCTATTGCTGATGCTTTAGCTGCTGATGATGAAAAGCATGAGAAAGAGAATCCTCCTGAGTCTTGCCAAGAGCATGAGGATATCAAGCAATCAGCTTTAATCGGTGGAGCTGATGTGGTTTTAAGGGATGCAAAGGCGGATTCTCAGAGAAGGAAGCAAAAGAGTAACCAGGCGTGGAGGCCAGACGATAAGCTCCGTCCTCAGGGTCTGCCTAATTTGGAAAAGCAGCGTAGTTTTCCGGTCATGAATTTGCATTTTAGTTCTGTGACTGTGGTGCCATCTTCGTGCCCTATTTGCTACGAAGATCTTGACTTAACAGACTCAAATTTCTTGCCATGTCCTTGTGGATTCCGGCTTTGCCTTTTCTGCCACAAGACGATATGCGATGGAGATGGGCGTTGTCCTGGTTGCAGAAAGCCTTATGAAAGGAACACAATCAAGTTTGAAGCTAGTGTTCAAGGTGGTGGTCTGACTATTCGGCTTGCTCGTTCGTCTAGCATGTTTTGCAGGTCATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000075 GO:0000077 GO:0000278 GO:0000288 GO:0000289 GO:0000956 GO:0002682 GO:0003674 GO:0003824 GO:0004842 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006139 GO:0006401 GO:0006402 GO:0006464 GO:0006508 GO:0006511 GO:0006725 GO:0006807 GO:0006950 GO:0006974 GO:0006977 GO:0007049 GO:0007093 GO:0007154 GO:0007165 GO:0007346 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009892 GO:0009987 GO:0010468 GO:0010564 GO:0010605 GO:0010629 GO:0010948 GO:0016070 GO:0016071 GO:0016567 GO:0016740 GO:0019222 GO:0019439 GO:0019538 GO:0019787 GO:0019941 GO:0022402 GO:0023052 GO:0030163 GO:0030330 GO:0031570 GO:0031571 GO:0032446 GO:0033554 GO:0034641 GO:0034655 GO:0035556 GO:0036211 GO:0042770 GO:0043170 GO:0043412 GO:0043632 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0044270 GO:0044424 GO:0044444 GO:0044464 GO:0044773 GO:0044774 GO:0044783 GO:0044819 GO:0045595 GO:0045637 GO:0045652 GO:0045786 GO:0045787 GO:0045930 GO:0046483 GO:0046700 GO:0048518 GO:0048519 GO:0048522 GO:0048523 GO:0050789 GO:0050793 GO:0050794 GO:0050896 GO:0051239 GO:0051603 GO:0051716 GO:0051726 GO:0051865 GO:0060255 GO:0065007 GO:0070647 GO:0071156 GO:0071158 GO:0071704 GO:0072331 GO:0072395 GO:0072401 GO:0072413 GO:0072422 GO:0072431 GO:0090068 GO:0090304 GO:0140096 GO:1901360 GO:1901361 GO:1901564 GO:1901565 GO:1901575 GO:1901987 GO:1901988 GO:1901990 GO:1901991 GO:1902400 GO:1902402 GO:1902403 GO:1902806 GO:1902807 GO:1903047 GO:1903706 GO:2000026 GO:2000045 GO:2000134
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
zf-RING_4

Protein Analysis

319

Amino Acids

35.23

Weight (kDa)

5.53

Isoelectric Point (pI)

62.54

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
zf-RING_4 PF14570 244 - 290 3.7e-17 RING/Ubox like zinc-binding domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 82
Acc36I ACCTGC 1 cut(s) 942
AccB1I GGYRCC 1 cut(s) 718
AccII CGCG 1 cut(s) 229
AciI CCGC 3 cut(s) 48, 227, 581
AcoI YGGCCR 1 cut(s) 87
AcsI RAATTY 4 cut(s) 241, 331, 691, 769
AcuI CTGAAG 1 cut(s) 21
AfiI CCNNNNNNNGG 1 cut(s) 646
AgsI TTSAA 4 cut(s) 97, 336, 890, 902
AjnI CCWGG 3 cut(s) 50, 612, 847
AluBI AGCT 9 cut(s) 41, 109, 282, 446, 464, 539, 554, 637, 893
AluI AGCT 9 cut(s) 41, 109, 282, 446, 464, 539, 554, 637, 893
AlwNI CAGNNNCTG 1 cut(s) 652
AoxI GGCC 2 cut(s) 87, 623
ApeKI GCWGC 4 cut(s) 351, 354, 464, 670
ApoI RAATTY 4 cut(s) 241, 331, 691, 769
AsuHPI GGTGA 1 cut(s) 10
AxyI CCTNAGG 1 cut(s) 645
BaeGI GKGCMC 1 cut(s) 734
BanI GGYRCC 1 cut(s) 718
BbsI GAAGAC 1 cut(s) 107
BbvI GCAGC 4 cut(s) 363, 366, 451, 682
BccI CCATC 4 cut(s) 416, 730, 824, 830
BciT130I CCWGG 3 cut(s) 52, 614, 849
BclI TGATCA 1 cut(s) 211
BfaI CTAG 3 cut(s) 110, 894, 939
BfuAI ACCTGC 1 cut(s) 942
BglII AGATCT 2 cut(s) 220, 748
BisI GCNGC 4 cut(s) 352, 355, 465, 671
BlsI GCNGC 4 cut(s) 353, 356, 466, 672
Bme1390I CCNGG 3 cut(s) 52, 614, 849
BmiI GGNNCC 1 cut(s) 720
BmrFI CCNGG 3 cut(s) 52, 614, 849
BmsI GCATC 3 cut(s) 400, 445, 562
BpiI GAAGAC 1 cut(s) 107
BpuEI CTTGAG 1 cut(s) 123
BsaJI CCNNGG 1 cut(s) 51
BsaWI WCCGGW 2 cut(s) 232, 682
BsaXI ACNNNNNCTCC 4 cut(s) 25, 55, 543, 573
Bsc4I CCNNNNNNNGG 1 cut(s) 646
Bse21I CCTNAGG 1 cut(s) 645
BseBI CCWGG 3 cut(s) 52, 614, 849
BseDI CCNNGG 1 cut(s) 51
BseGI GGATG 2 cut(s) 439, 577
BseLI CCNNNNNNNGG 1 cut(s) 646
BseMII CTCAG 3 cut(s) 492, 602, 659
BseRI GAGGAG 1 cut(s) 416
BseSI GKGCMC 1 cut(s) 734
BseXI GCAGC 4 cut(s) 363, 366, 451, 682
Bsh1236I CGCG 1 cut(s) 229
BshFI GGCC 2 cut(s) 89, 625
BshNI GGYRCC 1 cut(s) 718
BsiSI CCGG 3 cut(s) 233, 683, 796
BslI CCNNNNNNNGG 1 cut(s) 646
BsnI GGCC 2 cut(s) 89, 625
Bsp1286I GDGCHC 1 cut(s) 734
Bsp143I GATC 4 cut(s) 15, 211, 220, 748
BspACI CCGC 3 cut(s) 48, 227, 581
BspANI GGCC 2 cut(s) 89, 625
BspCNI CTCAG 3 cut(s) 493, 601, 658
BspFNI CGCG 1 cut(s) 229
BspHI TCATGA 3 cut(s) 274, 687, 956
BspLI GGNNCC 1 cut(s) 720
BspMI ACCTGC 1 cut(s) 942
BspT107I GGYRCC 1 cut(s) 718
BssECI CCNNGG 1 cut(s) 51
BssMI GATC 4 cut(s) 15, 211, 220, 748
Bst2UI CCWGG 3 cut(s) 52, 614, 849
Bst4CI ACNGT 2 cut(s) 314, 715
BstAPI GCANNNNNTGC 1 cut(s) 948
BstC8I GCNNGC 2 cut(s) 107, 927
BstDEI CTNAG 4 cut(s) 320, 501, 588, 645
BstF5I GGATG 2 cut(s) 439, 577
BstFNI CGCG 1 cut(s) 229
BstKTI GATC 4 cut(s) 18, 214, 223, 751
BstMBI GATC 4 cut(s) 15, 211, 220, 748
BstMWI GCNNNNNNNGC 7 cut(s) 38, 47, 360, 464, 738, 810, 948
BstNI CCWGG 3 cut(s) 52, 614, 849
BstNSI RCATGY 1 cut(s) 946
BstSCI CCNGG 3 cut(s) 50, 612, 847
BstSLI GKGCMC 1 cut(s) 734
BstUI CGCG 1 cut(s) 229
BstV1I GCAGC 4 cut(s) 363, 366, 451, 682
BstV2I GAAGAC 1 cut(s) 107
BstX2I RGATCY 2 cut(s) 220, 748
BstYI RGATCY 2 cut(s) 220, 748
Bsu36I CCTNAGG 1 cut(s) 645
BsuRI GGCC 2 cut(s) 89, 625
BtgZI GCGATG 2 cut(s) 161, 843
BtsCI GGATG 2 cut(s) 439, 577
BtsI GCAGTG 1 cut(s) 370
BtsIMutI CAGTG 1 cut(s) 370
BveI ACCTGC 1 cut(s) 942
Cac8I GCNNGC 2 cut(s) 107, 927
CaiI CAGNNNCTG 1 cut(s) 652
CciI TCATGA 3 cut(s) 274, 687, 956
CseI GACGC 1 cut(s) 218
CviAII CATG 8 cut(s) 275, 328, 482, 518, 688, 780, 943, 957
DdeI CTNAG 4 cut(s) 320, 501, 588, 645
DpnI GATC 4 cut(s) 17, 213, 222, 750
DpnII GATC 4 cut(s) 15, 211, 220, 748
DrdI GACNNNNNNGTC 1 cut(s) 82
DseDI GACNNNNNNGTC 1 cut(s) 82
EaeI YGGCCR 1 cut(s) 87
EciI GGCGGA 1 cut(s) 596
Eco32I GATATC 1 cut(s) 526
Eco57I CTGAAG 1 cut(s) 21
Eco81I CCTNAGG 1 cut(s) 645
EcoRI GAATTC 1 cut(s) 331
EcoRII CCWGG 3 cut(s) 50, 612, 847
EcoRV GATATC 1 cut(s) 526
FaeI CATG 8 cut(s) 278, 331, 485, 521, 691, 783, 946, 960
FatI CATG 8 cut(s) 274, 327, 481, 517, 687, 779, 942, 956
FbaI TGATCA 1 cut(s) 211
Fnu4HI GCNGC 4 cut(s) 352, 355, 465, 671
FokI GGATG 2 cut(s) 446, 584
Fsp4HI GCNGC 4 cut(s) 352, 355, 465, 671
FspBI CTAG 3 cut(s) 110, 894, 939
GluI GCNGC 4 cut(s) 352, 355, 465, 671
HaeIII GGCC 2 cut(s) 89, 625
HapII CCGG 3 cut(s) 233, 683, 796
HgaI GACGC 1 cut(s) 218
Hin1II CATG 8 cut(s) 278, 331, 485, 521, 691, 783, 946, 960
HinfI GANTC 8 cut(s) 11, 179, 290, 493, 503, 584, 764, 792
HpaII CCGG 3 cut(s) 233, 683, 796
HphI GGTGA 1 cut(s) 10
Hpy166II GTNNAC 1 cut(s) 125
Hpy188I TCNGA 5 cut(s) 10, 62, 216, 591, 915
Hpy188III TCNNGA 6 cut(s) 122, 275, 500, 688, 752, 957
Hpy8I GTNNAC 1 cut(s) 125
Hpy99I CGWCG 1 cut(s) 123
HpyAV CCTTC 1 cut(s) 588
HpyCH4III ACNGT 2 cut(s) 314, 715
HpyCH4V TGCA 4 cut(s) 575, 697, 855, 951
HpyF10VI GCNNNNNNNGC 7 cut(s) 38, 47, 360, 464, 738, 810, 948
HpyF3I CTNAG 4 cut(s) 320, 501, 588, 645
Hsp92II CATG 8 cut(s) 278, 331, 485, 521, 691, 783, 946, 960
Ksp22I TGATCA 1 cut(s) 211
Kzo9I GATC 4 cut(s) 15, 211, 220, 748
LmnI GCTCC 3 cut(s) 46, 551, 642
Lsp1109I GCAGC 4 cut(s) 363, 366, 451, 682
LweI GCATC 3 cut(s) 400, 445, 562
MaeI CTAG 3 cut(s) 110, 894, 939
MaeIII GTNAC 3 cut(s) 291, 608, 709
MalI GATC 4 cut(s) 17, 213, 222, 750
MboI GATC 4 cut(s) 15, 211, 220, 748
MboII GAAGA 6 cut(s) 107, 201, 215, 419, 717, 758
MflI RGATCY 2 cut(s) 220, 748
MhlI GDGCHC 1 cut(s) 734
MluCI AATT 9 cut(s) 92, 192, 241, 331, 336, 343, 658, 691, 769
MlyI GAGTC 3 cut(s) 299, 512, 758
MmeI TCCRAC 1 cut(s) 68
MnlI CCTC 8 cut(s) 163, 244, 394, 397, 507, 514, 615, 654
MseI TTAA 4 cut(s) 153, 542, 566, 758
MslI CAYNNNNRTG 2 cut(s) 273, 727
MspI CCGG 3 cut(s) 233, 683, 796
MspR9I CCNGG 3 cut(s) 52, 614, 849
MvaI CCWGG 3 cut(s) 52, 614, 849
MvnI CGCG 1 cut(s) 229
MwoI GCNNNNNNNGC 7 cut(s) 38, 47, 360, 464, 738, 810, 948
NdeII GATC 4 cut(s) 15, 211, 220, 748
NlaIII CATG 8 cut(s) 278, 331, 485, 521, 691, 783, 946, 960
NlaIV GGNNCC 1 cut(s) 720
NmuCI GTSAC 2 cut(s) 291, 709
NspI RCATGY 1 cut(s) 946
PagI TCATGA 3 cut(s) 274, 687, 956
PcsI WCGNNNNNNNCGW 1 cut(s) 928
PfeI GAWTC 5 cut(s) 11, 179, 493, 584, 792
PkrI GCNGC 4 cut(s) 353, 356, 466, 672
PleI GAGTC 3 cut(s) 298, 511, 758
PpsI GAGTC 3 cut(s) 298, 511, 758
Psp6I CCWGG 3 cut(s) 50, 612, 847
PspGI CCWGG 3 cut(s) 50, 612, 847
PspN4I GGNNCC 1 cut(s) 720
PstNI CAGNNNCTG 1 cut(s) 652
PsuI RGATCY 2 cut(s) 220, 748
RseI CAYNNNNRTG 2 cut(s) 273, 727
SaqAI TTAA 4 cut(s) 153, 542, 566, 758
SatI GCNGC 4 cut(s) 352, 355, 465, 671
Sau3AI GATC 4 cut(s) 15, 211, 220, 748
SchI GAGTC 3 cut(s) 299, 512, 758
ScrFI CCNGG 3 cut(s) 52, 614, 849
SduI GDGCHC 1 cut(s) 734
SfaNI GCATC 3 cut(s) 400, 445, 562
SmiMI CAYNNNNRTG 2 cut(s) 273, 727
SmlI CTYRAG 1 cut(s) 138
SmoI CTYRAG 1 cut(s) 138
Sse9I AATT 9 cut(s) 92, 192, 241, 331, 336, 343, 658, 691, 769
SsiI CCGC 3 cut(s) 48, 227, 581
SspMI CTAG 3 cut(s) 110, 894, 939
StyD4I CCNGG 3 cut(s) 50, 612, 847
TaaI ACNGT 2 cut(s) 314, 715
TaqI TCGA 2 cut(s) 14, 187
TasI AATT 9 cut(s) 92, 192, 241, 331, 336, 343, 658, 691, 769
TfiI GAWTC 5 cut(s) 11, 179, 493, 584, 792
Tru1I TTAA 4 cut(s) 153, 542, 566, 758
Tru9I TTAA 4 cut(s) 153, 542, 566, 758
TscAI CASTG 1 cut(s) 370
TseFI GTSAC 2 cut(s) 291, 709
TseI GCWGC 4 cut(s) 351, 354, 464, 670
Tsp45I GTSAC 2 cut(s) 291, 709
TspDTI ATGAA 4 cut(s) 344, 489, 704, 882
TspGWI ACGGA 1 cut(s) 629
TspRI CASTG 1 cut(s) 370
XapI RAATTY 4 cut(s) 241, 331, 691, 769
XceI RCATGY 1 cut(s) 946
XspI CTAG 3 cut(s) 110, 894, 939
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.