Rh7BG028100

RING/Ubox like zinc-binding domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7B
OG0005751
Physical Location & Seq
Reverse (-)
1938799 .. 1943853
5055 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7BG028100.1

Sequence Viewer

Length: 954 bp
ATGGTTTCCGACTCGATCACCAACGTTTCCATTCCTTCGGCCCCAAAAAGCGCCAGGGATTTGGGCAAGAAGAAGAGGGCCAGGTCGGCGAAATTGAAGCAGTGCAAGCTGGACGTTCGCCGCGAGCAATGGCTTTCTTCAGGTGCGGTGGTGAAGAAGGAGTGCAAGGAGGAACAGAACGGCGGTGTTCAAGGTCGGAGAGAGCGGAATAGCCCTAGGGAAATGGGGCCTAGAGAAGGAGAGAACGTCGGATCGATCCACCACCATGACAGCGATTTGGACTCGAACAGTCCGTCCAGCTTCACGAGTAGTGTGTTGGGCGGCCACGATTCGGAGACTTTCACCGGCTCCAGCAGCAGTAGCAGCAGCGGTGACTGTTGCTCCGGTAATATCACCGAGGAGGATGAGGATGATGGCTGCCTGGATGATTGGGAGGCTGTGGCGGACGCCTTGGCAGCGGATGAGAAGCCGAAGAACCAGAATCCAGAGCCGCAAAGGGAGCATGAAGCGATTGCGAAATCGGTTCCTGCTAGTCAGATTGAGAATTCGAAACCTCAGTGTGCTAGAGCTATGCCGAAAGCGTGGAGGCCTGATGATGCTTTTCGTCCCCAGAGTCTGCCCAATTTGGCTAAGCAGCTCAGCTTGCCGAATTCCAGCGGGAAACGATTCGGTGGTGGTGGTGTTGCGTGGGGCTGTAACAGTGTGGTATCTCCGCCGTCTTCGTGTCCTATATGCTACGAGGATTTGGACTTGACAGACACCAGCTTCTTGCCGTGCTTGTGTGGATTCAGGCTCTGCCTTTTCTGTCACAAGAGGATTCTTGAGGGGGATGGTCGCTGTCCCGGCTGCAGGAAGCCCTATGAGAATGAGCCTGTTGAGGCAGAGACAAGTGTCCATGGAGGTAGTCTTACATTCAGGTTGCCTCGTTCATGTAGCATGATCACAAGGTCTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000075 GO:0000077 GO:0000278 GO:0000288 GO:0000289 GO:0000956 GO:0002682 GO:0003674 GO:0003824 GO:0004842 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006139 GO:0006401 GO:0006402 GO:0006464 GO:0006508 GO:0006511 GO:0006725 GO:0006807 GO:0006950 GO:0006974 GO:0006977 GO:0007049 GO:0007093 GO:0007154 GO:0007165 GO:0007346 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009892 GO:0009987 GO:0010468 GO:0010564 GO:0010605 GO:0010629 GO:0010948 GO:0016070 GO:0016071 GO:0016567 GO:0016740 GO:0019222 GO:0019439 GO:0019538 GO:0019787 GO:0019941 GO:0022402 GO:0023052 GO:0030163 GO:0030330 GO:0031570 GO:0031571 GO:0032446 GO:0033554 GO:0034641 GO:0034655 GO:0035556 GO:0036211 GO:0042770 GO:0043170 GO:0043412 GO:0043632 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0044270 GO:0044424 GO:0044444 GO:0044464 GO:0044773 GO:0044774 GO:0044783 GO:0044819 GO:0045595 GO:0045637 GO:0045652 GO:0045786 GO:0045787 GO:0045930 GO:0046483 GO:0046700 GO:0048518 GO:0048519 GO:0048522 GO:0048523 GO:0050789 GO:0050793 GO:0050794 GO:0050896 GO:0051239 GO:0051603 GO:0051716 GO:0051726 GO:0051865 GO:0060255 GO:0065007 GO:0070647 GO:0071156 GO:0071158 GO:0071704 GO:0072331 GO:0072395 GO:0072401 GO:0072413 GO:0072422 GO:0072431 GO:0090068 GO:0090304 GO:0140096 GO:1901360 GO:1901361 GO:1901564 GO:1901565 GO:1901575 GO:1901987 GO:1901988 GO:1901990 GO:1901991 GO:1902400 GO:1902402 GO:1902403 GO:1902806 GO:1902807 GO:1903047 GO:1903706 GO:2000026 GO:2000045 GO:2000134
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
zf-RING_4

Protein Analysis

317

Amino Acids

34.33

Weight (kDa)

6.03

Isoelectric Point (pI)

64.43

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
zf-RING_4 PF14570 242 - 288 2.9e-18 RING/Ubox like zinc-binding domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 205
AccII CGCG 1 cut(s) 123
AclI AACGTT 1 cut(s) 24
AclWI GGATC 2 cut(s) 250, 259
AcoI YGGCCR 1 cut(s) 322
AcsI RAATTY 2 cut(s) 544, 649
AcuI CTGAAG 1 cut(s) 123
AcyI GRCGYC 1 cut(s) 447
AfiI CCNNNNNNNGG 3 cut(s) 236, 331, 849
AgsI TTSAA 2 cut(s) 97, 191
AjnI CCWGG 3 cut(s) 53, 80, 420
AloI GAACNNNNNNTCC 2 cut(s) 278, 310
AluBI AGCT 6 cut(s) 109, 300, 569, 637, 642, 765
AluI AGCT 6 cut(s) 109, 300, 569, 637, 642, 765
Alw26I GTCTC 2 cut(s) 329, 878
AlwI GGATC 2 cut(s) 250, 259
AlwNI CAGNNNCTG 2 cut(s) 616, 795
AoxI GGCC 5 cut(s) 39, 78, 227, 322, 587
ApeKI GCWGC 7 cut(s) 354, 363, 366, 417, 455, 634, 846
ApoI RAATTY 2 cut(s) 544, 649
ArsI GACNNNNNNTTYG 2 cut(s) 278, 310
Asp700I GAANNNNTTC 1 cut(s) 665
AspA2I CCTAGG 1 cut(s) 215
AspLEI GCGC 1 cut(s) 53
AspS9I GGNCC 3 cut(s) 40, 78, 227
AsuC2I CCSGG 1 cut(s) 843
AsuHPI GGTGA 5 cut(s) 10, 163, 334, 383, 385
AsuII TTCGAA 1 cut(s) 548
AvrII CCTAGG 1 cut(s) 215
BauI CACGAG 1 cut(s) 304
BbsI GAAGAC 1 cut(s) 711
BbvI GCAGC 7 cut(s) 366, 375, 378, 404, 467, 646, 833
BccI CCATC 2 cut(s) 407, 824
BceAI ACGGC 3 cut(s) 196, 700, 757
BciT130I CCWGG 3 cut(s) 55, 82, 422
BclI TGATCA 1 cut(s) 939
BcnI CCSGG 1 cut(s) 843
BcoDI GTCTC 2 cut(s) 329, 878
BfaI CTAG 4 cut(s) 216, 231, 531, 564
BfmI CTRYAG 1 cut(s) 847
BfoI RGCGCY 1 cut(s) 54
BglI GCCNNNNNGGC 1 cut(s) 86
BlnI CCTAGG 1 cut(s) 215
BlpI GCTNAGC 2 cut(s) 630, 638
Bme1390I CCNGG 4 cut(s) 55, 82, 422, 843
BmgT120I GGNCC 3 cut(s) 40, 78, 227
BmiI GGNNCC 4 cut(s) 42, 228, 349, 525
BmrFI CCNGG 4 cut(s) 55, 82, 422, 843
BmsI GCATC 1 cut(s) 586
BoxI GACNNNNGTC 1 cut(s) 890
BpiI GAAGAC 1 cut(s) 711
BpmI CTGGAG 1 cut(s) 334
Bpu1102I GCTNAGC 2 cut(s) 630, 638
Bpu14I TTCGAA 1 cut(s) 548
BpuEI CTTGAG 1 cut(s) 842
BpuMI CCSGG 1 cut(s) 843
Bsa29I ATCGAT 1 cut(s) 254
BsaHI GRCGYC 1 cut(s) 447
BsaJI CCNNGG 5 cut(s) 54, 215, 396, 450, 895
BsaWI WCCGGW 1 cut(s) 383
BsaXI ACNNNNNCTCC 4 cut(s) 231, 261, 365, 395
Bsc4I CCNNNNNNNGG 3 cut(s) 236, 331, 849
Bse118I RCCGGY 1 cut(s) 344
Bse3DI GCAATG 1 cut(s) 134
BseBI CCWGG 3 cut(s) 55, 82, 422
BseCI ATCGAT 1 cut(s) 254
BseDI CCNNGG 5 cut(s) 54, 215, 396, 450, 895
BseGI GGATG 5 cut(s) 409, 415, 430, 466, 835
BseLI CCNNNNNNNGG 3 cut(s) 236, 331, 849
BseMI GCAATG 1 cut(s) 134
BseMII CTCAG 2 cut(s) 569, 652
BseRI GAGGAG 1 cut(s) 413
BseXI GCAGC 7 cut(s) 366, 375, 378, 404, 467, 646, 833
Bsh1236I CGCG 1 cut(s) 123
BshFI GGCC 5 cut(s) 41, 80, 229, 324, 589
BshVI ATCGAT 1 cut(s) 254
BsiSI CCGG 3 cut(s) 345, 384, 843
BslFI GGGAC 2 cut(s) 591, 825
BslI CCNNNNNNNGG 3 cut(s) 236, 331, 849
BsmAI GTCTC 2 cut(s) 329, 878
BsmFI GGGAC 2 cut(s) 591, 825
BsnI GGCC 5 cut(s) 41, 80, 229, 324, 589
Bsp119I TTCGAA 1 cut(s) 548
Bsp143I GATC 4 cut(s) 15, 251, 255, 939
Bsp1720I GCTNAGC 2 cut(s) 630, 638
Bsp19I CCATGG 1 cut(s) 895
BspANI GGCC 5 cut(s) 41, 80, 229, 324, 589
BspCNI CTCAG 2 cut(s) 568, 651
BspDI ATCGAT 1 cut(s) 254
BspFNI CGCG 1 cut(s) 123
BspLI GGNNCC 4 cut(s) 42, 228, 349, 525
BspMAI CTGCAG 1 cut(s) 851
BspPI GGATC 2 cut(s) 250, 259
BspT104I TTCGAA 1 cut(s) 548
BsrBI CCGCTC 1 cut(s) 205
BsrDI GCAATG 1 cut(s) 134
BsrFI RCCGGY 1 cut(s) 344
BssAI RCCGGY 1 cut(s) 344
BssECI CCNNGG 5 cut(s) 54, 215, 396, 450, 895
BssMI GATC 4 cut(s) 15, 251, 255, 939
BssNI GRCGYC 1 cut(s) 447
BssSI CACGAG 1 cut(s) 304
BssT1I CCWWGG 3 cut(s) 215, 450, 895
Bst2BI CACGAG 1 cut(s) 304
Bst2UI CCWGG 3 cut(s) 55, 82, 422
Bst4CI ACNGT 3 cut(s) 290, 377, 701
Bst6I CTCTTC 1 cut(s) 68
BstACI GRCGYC 1 cut(s) 447
BstBI TTCGAA 1 cut(s) 548
BstC8I GCNNGC 3 cut(s) 107, 125, 644
BstDEI CTNAG 3 cut(s) 555, 630, 638
BstDSI CCRYGG 1 cut(s) 895
BstENI CCTNNNNNAGG 1 cut(s) 234
BstF5I GGATG 5 cut(s) 409, 415, 430, 466, 835
BstFNI CGCG 1 cut(s) 123
BstH2I RGCGCY 1 cut(s) 54
BstHHI GCGC 1 cut(s) 53
BstKTI GATC 4 cut(s) 18, 254, 258, 942
BstMAI GTCTC 2 cut(s) 329, 878
BstMBI GATC 4 cut(s) 15, 251, 255, 939
BstMWI GCNNNNNNNGC 9 cut(s) 86, 106, 354, 360, 363, 455, 499, 643, 843
BstNI CCWGG 3 cut(s) 55, 82, 422
BstPAI GACNNNNGTC 1 cut(s) 890
BstSCI CCNGG 4 cut(s) 53, 80, 420, 841
BstSFI CTRYAG 1 cut(s) 847
BstUI CGCG 1 cut(s) 123
BstV1I GCAGC 7 cut(s) 366, 375, 378, 404, 467, 646, 833
BstV2I GAAGAC 1 cut(s) 711
BstXI CCANNNNNNTGG 1 cut(s) 61
Bsu15I ATCGAT 1 cut(s) 254
BsuRI GGCC 5 cut(s) 41, 80, 229, 324, 589
BsuTUI ATCGAT 1 cut(s) 254
BtgI CCRYGG 1 cut(s) 895
BtsCI GGATG 5 cut(s) 409, 415, 430, 466, 835
BtsI GCAGTG 1 cut(s) 107
BtsIMutI CAGTG 3 cut(s) 107, 563, 706
Cac8I GCNNGC 3 cut(s) 107, 125, 644
CaiI CAGNNNCTG 2 cut(s) 616, 795
CfoI GCGC 1 cut(s) 53
Cfr10I RCCGGY 1 cut(s) 344
Cfr13I GGNCC 3 cut(s) 40, 78, 227
ClaI ATCGAT 1 cut(s) 254
CseI GACGC 1 cut(s) 455
CviAII CATG 5 cut(s) 266, 503, 896, 930, 937
DdeI CTNAG 3 cut(s) 555, 630, 638
DpnI GATC 4 cut(s) 17, 253, 257, 941
DpnII GATC 4 cut(s) 15, 251, 255, 939
EaeI YGGCCR 1 cut(s) 322
Eam1104I CTCTTC 1 cut(s) 68
EarI CTCTTC 1 cut(s) 68
EciI GGCGGA 2 cut(s) 458, 702
Eco130I CCWWGG 3 cut(s) 215, 450, 895
Eco147I AGGCCT 1 cut(s) 589
Eco57I CTGAAG 1 cut(s) 123
EcoNI CCTNNNNNAGG 1 cut(s) 234
EcoO109I RGGNCCY 1 cut(s) 227
EcoRI GAATTC 2 cut(s) 544, 649
EcoRII CCWGG 3 cut(s) 53, 80, 420
EcoT14I CCWWGG 3 cut(s) 215, 450, 895
ErhI CCWWGG 3 cut(s) 215, 450, 895
FaeI CATG 5 cut(s) 269, 506, 899, 933, 940
FaiI YATR 9 cut(s) 267, 504, 572, 731, 733, 861, 897, 931, 938
FaqI GGGAC 2 cut(s) 591, 825
FatI CATG 5 cut(s) 265, 502, 895, 929, 936
FauI CCCGC 1 cut(s) 650
FbaI TGATCA 1 cut(s) 939
FokI GGATG 5 cut(s) 416, 422, 437, 473, 842
FspBI CTAG 4 cut(s) 216, 231, 531, 564
GlaI GCGC 1 cut(s) 52
GsuI CTGGAG 1 cut(s) 334
HaeII RGCGCY 1 cut(s) 54
HaeIII GGCC 5 cut(s) 41, 80, 229, 324, 589
HapII CCGG 3 cut(s) 345, 384, 843
HgaI GACGC 1 cut(s) 455
HhaI GCGC 1 cut(s) 53
Hin1I GRCGYC 1 cut(s) 447
Hin1II CATG 5 cut(s) 269, 506, 899, 933, 940
Hin6I GCGC 1 cut(s) 51
HinP1I GCGC 1 cut(s) 51
HinfI GANTC 8 cut(s) 11, 281, 329, 481, 613, 666, 786, 817
HpaII CCGG 3 cut(s) 345, 384, 843
HphI GGTGA 5 cut(s) 10, 163, 334, 383, 385
Hpy188I TCNGA 5 cut(s) 10, 198, 251, 334, 537
Hpy188III TCNNGA 3 cut(s) 304, 485, 821
Hpy99I CGWCG 1 cut(s) 251
HpyAV CCTTC 3 cut(s) 45, 151, 230
HpyCH4III ACNGT 3 cut(s) 290, 377, 701
HpyCH4IV ACGT 3 cut(s) 24, 114, 246
HpyCH4V TGCA 3 cut(s) 105, 165, 849
HpyF10VI GCNNNNNNNGC 9 cut(s) 86, 106, 354, 360, 363, 455, 499, 643, 843
HpyF3I CTNAG 3 cut(s) 555, 630, 638
HpySE526I ACGT 3 cut(s) 24, 114, 246
Hsp92I GRCGYC 1 cut(s) 447
Hsp92II CATG 5 cut(s) 269, 506, 899, 933, 940
HspAI GCGC 1 cut(s) 51
Ksp22I TGATCA 1 cut(s) 939
Kzo9I GATC 4 cut(s) 15, 251, 255, 939
LmnI GCTCC 3 cut(s) 353, 386, 499
Lsp1109I GCAGC 7 cut(s) 366, 375, 378, 404, 467, 646, 833
LweI GCATC 1 cut(s) 586
MaeI CTAG 4 cut(s) 216, 231, 531, 564
MaeII ACGT 3 cut(s) 24, 114, 246
MaeIII GTNAC 3 cut(s) 371, 695, 806
MalI GATC 4 cut(s) 17, 253, 257, 941
MbiI CCGCTC 1 cut(s) 205
MboI GATC 4 cut(s) 15, 251, 255, 939
MboII GAAGA 6 cut(s) 82, 85, 129, 166, 484, 711
MluCI AATT 4 cut(s) 92, 544, 622, 649
MlyI GAGTC 3 cut(s) 5, 275, 622
MmeI TCCRAC 3 cut(s) 33, 176, 229
MroXI GAANNNNTTC 1 cut(s) 665
MseI TTAA 1 cut(s) 952
MslI CAYNNNNRTG 1 cut(s) 264
MspA1I CMGCKG 3 cut(s) 369, 458, 657
MspI CCGG 3 cut(s) 345, 384, 843
MspR9I CCNGG 4 cut(s) 55, 82, 422, 843
MvaI CCWGG 3 cut(s) 55, 82, 422
MvnI CGCG 1 cut(s) 123
MwoI GCNNNNNNNGC 9 cut(s) 86, 106, 354, 360, 363, 455, 499, 643, 843
NciI CCSGG 1 cut(s) 843
NcoI CCATGG 1 cut(s) 895
NdeII GATC 4 cut(s) 15, 251, 255, 939
NlaIII CATG 5 cut(s) 269, 506, 899, 933, 940
NlaIV GGNNCC 4 cut(s) 42, 228, 349, 525
NmuCI GTSAC 2 cut(s) 371, 806
NspV TTCGAA 1 cut(s) 548
PceI AGGCCT 1 cut(s) 589
PcsI WCGNNNNNNNCGW 2 cut(s) 120, 290
PdmI GAANNNNTTC 1 cut(s) 665
PfeI GAWTC 5 cut(s) 329, 481, 666, 786, 817
PleI GAGTC 3 cut(s) 5, 275, 621
PpsI GAGTC 3 cut(s) 5, 275, 621
PshAI GACNNNNGTC 1 cut(s) 890
Psp1406I AACGTT 1 cut(s) 24
Psp6I CCWGG 3 cut(s) 53, 80, 420
PspGI CCWGG 3 cut(s) 53, 80, 420
PspN4I GGNNCC 4 cut(s) 42, 228, 349, 525
PspPI GGNCC 3 cut(s) 40, 78, 227
PstI CTGCAG 1 cut(s) 851
PstNI CAGNNNCTG 2 cut(s) 616, 795
RseI CAYNNNNRTG 1 cut(s) 264
SaqAI TTAA 1 cut(s) 952
Sau3AI GATC 4 cut(s) 15, 251, 255, 939
Sau96I GGNCC 3 cut(s) 40, 78, 227
SchI GAGTC 3 cut(s) 5, 275, 622
ScrFI CCNGG 4 cut(s) 55, 82, 422, 843
SfaNI GCATC 1 cut(s) 586
SfcI CTRYAG 1 cut(s) 847
SfuI TTCGAA 1 cut(s) 548
SmiMI CAYNNNNRTG 1 cut(s) 264
SmlI CTYRAG 1 cut(s) 821
SmoI CTYRAG 1 cut(s) 821
Sse9I AATT 4 cut(s) 92, 544, 622, 649
SseBI AGGCCT 1 cut(s) 589
SspMI CTAG 4 cut(s) 216, 231, 531, 564
StuI AGGCCT 1 cut(s) 589
StyD4I CCNGG 4 cut(s) 53, 80, 420, 841
StyI CCWWGG 3 cut(s) 215, 450, 895
TaaI ACNGT 3 cut(s) 290, 377, 701
TaiI ACGT 3 cut(s) 27, 117, 249
TaqI TCGA 4 cut(s) 14, 254, 284, 548
TasI AATT 4 cut(s) 92, 544, 622, 649
TauI GCSGC 3 cut(s) 123, 324, 493
TfiI GAWTC 5 cut(s) 329, 481, 666, 786, 817
Tru1I TTAA 1 cut(s) 952
Tru9I TTAA 1 cut(s) 952
TscAI CASTG 3 cut(s) 107, 563, 706
TseFI GTSAC 2 cut(s) 371, 806
TseI GCWGC 7 cut(s) 354, 363, 366, 417, 455, 634, 846
Tsp45I GTSAC 2 cut(s) 371, 806
TspDTI ATGAA 2 cut(s) 519, 918
TspGWI ACGGA 1 cut(s) 282
TspRI CASTG 3 cut(s) 107, 563, 706
XagI CCTNNNNNAGG 1 cut(s) 234
XapI RAATTY 2 cut(s) 544, 649
XmaJI CCTAGG 1 cut(s) 215
XmnI GAANNNNTTC 1 cut(s) 665
XspI CTAG 4 cut(s) 216, 231, 531, 564
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.