Rh7AG029000

RING/Ubox like zinc-binding domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7A
OG0005751
Physical Location & Seq
Reverse (-)
1922046 .. 1928348
6303 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7AG029000.1

Sequence Viewer

Length: 741 bp
ATGGGGCCTAGAGAAGGAGAGAACGTCGGATCGATCCACCACCACCACCACCATGACAGCGATTTGGACTCGAACAGTCCGTCCAGCTTCACGAGTAGTGTGTTGGGCGGCCACGATTCGGAGACTTTCACCGGCTCCAGCAGCAGCAGTAGCAGCAGCGGTGACTGTTGCTCCGGTAATATCACCGAGGAGGATGAGGATGATGGCTGCCTGGATGATTGGGAGGCTGTGGCGGACGCCTTGGCGGCGGATGAGAAGCCGAAGAACCAGAATCCAGAGCCGCAAAGGGAGCATGAAGCGATTGCGAAATCGGTTCCTGCTAGTCAGATTGAGAATTCGAAACCTCAGTGTGCTAGAGCTATGCCGAAAGCGTGGAGGCCTGATGATGCTTTTCGTCCCCAGAGTCTGCCCAATTTGGCTAAGCAGCTCAGCTTGCCGAATTCCAGCGGGAAACGATTCGGTGGTGGTGTTGCGTGGGGCTGTAACAGTGTGGTATCTCCGCCGTCTTCGTGTCCTATATGCTACGAGGATTTGGACTTGACAGACACCAGCTTCTTGCCCTGCTTGTGTGGATTCAGGCTCTGCCTTTTCTGTCACAAGAGGATTCTTGAGGGGGATGGTCGCTGTCCCGGCTGCAGGAAGCCCTATGAGAATGAGCCTGTTGAGGCAGAGACAAGTGTCCATGGAGGTAGTCTTACATTCAGGTTGCCTCGTTCATGTAGCATGATCACAAGGTCTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000075 GO:0000077 GO:0000278 GO:0000288 GO:0000289 GO:0000956 GO:0002682 GO:0003674 GO:0003824 GO:0004842 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006139 GO:0006401 GO:0006402 GO:0006464 GO:0006508 GO:0006511 GO:0006725 GO:0006807 GO:0006950 GO:0006974 GO:0006977 GO:0007049 GO:0007093 GO:0007154 GO:0007165 GO:0007346 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009892 GO:0009987 GO:0010468 GO:0010564 GO:0010605 GO:0010629 GO:0010948 GO:0016070 GO:0016071 GO:0016567 GO:0016740 GO:0019222 GO:0019439 GO:0019538 GO:0019787 GO:0019941 GO:0022402 GO:0023052 GO:0030163 GO:0030330 GO:0031570 GO:0031571 GO:0032446 GO:0033554 GO:0034641 GO:0034655 GO:0035556 GO:0036211 GO:0042770 GO:0043170 GO:0043412 GO:0043632 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0044270 GO:0044424 GO:0044444 GO:0044464 GO:0044773 GO:0044774 GO:0044783 GO:0044819 GO:0045595 GO:0045637 GO:0045652 GO:0045786 GO:0045787 GO:0045930 GO:0046483 GO:0046700 GO:0048518 GO:0048519 GO:0048522 GO:0048523 GO:0050789 GO:0050793 GO:0050794 GO:0050896 GO:0051239 GO:0051603 GO:0051716 GO:0051726 GO:0051865 GO:0060255 GO:0065007 GO:0070647 GO:0071156 GO:0071158 GO:0071704 GO:0072331 GO:0072395 GO:0072401 GO:0072413 GO:0072422 GO:0072431 GO:0090068 GO:0090304 GO:0140096 GO:1901360 GO:1901361 GO:1901564 GO:1901565 GO:1901575 GO:1901987 GO:1901988 GO:1901990 GO:1901991 GO:1902400 GO:1902402 GO:1902403 GO:1902806 GO:1902807 GO:1903047 GO:1903706 GO:2000026 GO:2000045 GO:2000134
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
zf-RING_4

Protein Analysis

246

Amino Acids

26.49

Weight (kDa)

5.07

Isoelectric Point (pI)

64.38

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
zf-RING_4 PF14570 171 - 217 1.9e-18 RING/Ubox like zinc-binding domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 8 cut(s) 108, 159, 233, 245, 248, 281, 447, 500
AclWI GGATC 2 cut(s) 28, 37
AcoI YGGCCR 1 cut(s) 109
AcsI RAATTY 2 cut(s) 334, 439
AcyI GRCGYC 1 cut(s) 237
AfiI CCNNNNNNNGG 3 cut(s) 14, 118, 636
AjnI CCWGG 1 cut(s) 210
AloI GAACNNNNNNTCC 2 cut(s) 65, 97
AluBI AGCT 5 cut(s) 87, 359, 427, 432, 552
AluI AGCT 5 cut(s) 87, 359, 427, 432, 552
Alw26I GTCTC 2 cut(s) 116, 665
AlwI GGATC 2 cut(s) 28, 37
AlwNI CAGNNNCTG 2 cut(s) 406, 582
AoxI GGCC 3 cut(s) 5, 109, 377
ApeKI GCWGC 7 cut(s) 141, 144, 153, 156, 207, 424, 633
ApoI RAATTY 2 cut(s) 334, 439
ArsI GACNNNNNNTTYG 2 cut(s) 65, 97
Asp700I GAANNNNTTC 1 cut(s) 455
AspS9I GGNCC 1 cut(s) 5
AsuC2I CCSGG 1 cut(s) 630
AsuHPI GGTGA 3 cut(s) 121, 173, 175
AsuII TTCGAA 1 cut(s) 338
BauI CACGAG 1 cut(s) 91
BbsI GAAGAC 1 cut(s) 498
BbvI GCAGC 7 cut(s) 153, 156, 165, 168, 194, 436, 620
BccI CCATC 2 cut(s) 197, 611
BceAI ACGGC 1 cut(s) 487
BciT130I CCWGG 1 cut(s) 212
BclI TGATCA 1 cut(s) 726
BcnI CCSGG 1 cut(s) 630
BcoDI GTCTC 2 cut(s) 116, 665
BfaI CTAG 3 cut(s) 9, 321, 354
BfmI CTRYAG 1 cut(s) 634
BglI GCCNNNNNGGC 1 cut(s) 245
BlpI GCTNAGC 2 cut(s) 420, 428
Bme1390I CCNGG 2 cut(s) 212, 630
BmgT120I GGNCC 1 cut(s) 5
BmiI GGNNCC 3 cut(s) 6, 136, 315
BmrFI CCNGG 2 cut(s) 212, 630
BmsI GCATC 1 cut(s) 376
BoxI GACNNNNGTC 1 cut(s) 677
BpiI GAAGAC 1 cut(s) 498
BpmI CTGGAG 1 cut(s) 121
Bpu1102I GCTNAGC 2 cut(s) 420, 428
Bpu14I TTCGAA 1 cut(s) 338
BpuEI CTTGAG 1 cut(s) 629
BpuMI CCSGG 1 cut(s) 630
Bsa29I ATCGAT 1 cut(s) 32
BsaHI GRCGYC 1 cut(s) 237
BsaJI CCNNGG 3 cut(s) 186, 240, 682
BsaWI WCCGGW 1 cut(s) 173
BsaXI ACNNNNNCTCC 4 cut(s) 9, 39, 155, 185
Bsc4I CCNNNNNNNGG 3 cut(s) 14, 118, 636
Bse118I RCCGGY 1 cut(s) 131
BseBI CCWGG 1 cut(s) 212
BseCI ATCGAT 1 cut(s) 32
BseDI CCNNGG 3 cut(s) 186, 240, 682
BseGI GGATG 5 cut(s) 199, 205, 220, 256, 622
BseLI CCNNNNNNNGG 3 cut(s) 14, 118, 636
BseMII CTCAG 2 cut(s) 359, 442
BseRI GAGGAG 1 cut(s) 203
BseXI GCAGC 7 cut(s) 153, 156, 165, 168, 194, 436, 620
BshFI GGCC 3 cut(s) 7, 111, 379
BshVI ATCGAT 1 cut(s) 32
BsiSI CCGG 3 cut(s) 132, 174, 630
BslFI GGGAC 2 cut(s) 381, 612
BslI CCNNNNNNNGG 3 cut(s) 14, 118, 636
BsmAI GTCTC 2 cut(s) 116, 665
BsmFI GGGAC 2 cut(s) 381, 612
BsnI GGCC 3 cut(s) 7, 111, 379
Bsp119I TTCGAA 1 cut(s) 338
Bsp143I GATC 3 cut(s) 29, 33, 726
Bsp1720I GCTNAGC 2 cut(s) 420, 428
Bsp19I CCATGG 1 cut(s) 682
BspACI CCGC 8 cut(s) 108, 159, 233, 245, 248, 281, 447, 500
BspANI GGCC 3 cut(s) 7, 111, 379
BspCNI CTCAG 2 cut(s) 358, 441
BspDI ATCGAT 1 cut(s) 32
BspLI GGNNCC 3 cut(s) 6, 136, 315
BspMAI CTGCAG 1 cut(s) 638
BspPI GGATC 2 cut(s) 28, 37
BspT104I TTCGAA 1 cut(s) 338
BsrFI RCCGGY 1 cut(s) 131
BssAI RCCGGY 1 cut(s) 131
BssECI CCNNGG 3 cut(s) 186, 240, 682
BssMI GATC 3 cut(s) 29, 33, 726
BssNI GRCGYC 1 cut(s) 237
BssSI CACGAG 1 cut(s) 91
BssT1I CCWWGG 2 cut(s) 240, 682
Bst2BI CACGAG 1 cut(s) 91
Bst2UI CCWGG 1 cut(s) 212
Bst4CI ACNGT 3 cut(s) 77, 167, 488
BstACI GRCGYC 1 cut(s) 237
BstBI TTCGAA 1 cut(s) 338
BstC8I GCNNGC 1 cut(s) 434
BstDEI CTNAG 3 cut(s) 345, 420, 428
BstDSI CCRYGG 1 cut(s) 682
BstENI CCTNNNNNAGG 1 cut(s) 12
BstF5I GGATG 5 cut(s) 199, 205, 220, 256, 622
BstKTI GATC 3 cut(s) 32, 36, 729
BstMAI GTCTC 2 cut(s) 116, 665
BstMBI GATC 3 cut(s) 29, 33, 726
BstMWI GCNNNNNNNGC 7 cut(s) 141, 150, 153, 245, 289, 433, 630
BstNI CCWGG 1 cut(s) 212
BstPAI GACNNNNGTC 1 cut(s) 677
BstSCI CCNGG 2 cut(s) 210, 628
BstSFI CTRYAG 1 cut(s) 634
BstV1I GCAGC 7 cut(s) 153, 156, 165, 168, 194, 436, 620
BstV2I GAAGAC 1 cut(s) 498
Bsu15I ATCGAT 1 cut(s) 32
BsuRI GGCC 3 cut(s) 7, 111, 379
BsuTUI ATCGAT 1 cut(s) 32
BtgI CCRYGG 1 cut(s) 682
BtsCI GGATG 5 cut(s) 199, 205, 220, 256, 622
BtsIMutI CAGTG 2 cut(s) 353, 493
Cac8I GCNNGC 1 cut(s) 434
CaiI CAGNNNCTG 2 cut(s) 406, 582
Cfr10I RCCGGY 1 cut(s) 131
Cfr13I GGNCC 1 cut(s) 5
ClaI ATCGAT 1 cut(s) 32
CseI GACGC 1 cut(s) 245
CviAII CATG 5 cut(s) 53, 293, 683, 717, 724
DdeI CTNAG 3 cut(s) 345, 420, 428
DpnI GATC 3 cut(s) 31, 35, 728
DpnII GATC 3 cut(s) 29, 33, 726
EaeI YGGCCR 1 cut(s) 109
EciI GGCGGA 3 cut(s) 248, 263, 489
Eco130I CCWWGG 2 cut(s) 240, 682
Eco147I AGGCCT 1 cut(s) 379
EcoNI CCTNNNNNAGG 1 cut(s) 12
EcoO109I RGGNCCY 1 cut(s) 5
EcoRI GAATTC 2 cut(s) 334, 439
EcoRII CCWGG 1 cut(s) 210
EcoT14I CCWWGG 2 cut(s) 240, 682
ErhI CCWWGG 2 cut(s) 240, 682
FaeI CATG 5 cut(s) 56, 296, 686, 720, 727
FaiI YATR 9 cut(s) 54, 294, 362, 518, 520, 648, 684, 718, 725
FaqI GGGAC 2 cut(s) 381, 612
FatI CATG 5 cut(s) 52, 292, 682, 716, 723
FauI CCCGC 1 cut(s) 440
FbaI TGATCA 1 cut(s) 726
FokI GGATG 5 cut(s) 206, 212, 227, 263, 629
FspBI CTAG 3 cut(s) 9, 321, 354
GsuI CTGGAG 1 cut(s) 121
HaeIII GGCC 3 cut(s) 7, 111, 379
HapII CCGG 3 cut(s) 132, 174, 630
HgaI GACGC 1 cut(s) 245
Hin1I GRCGYC 1 cut(s) 237
Hin1II CATG 5 cut(s) 56, 296, 686, 720, 727
HinfI GANTC 7 cut(s) 68, 116, 271, 403, 456, 573, 604
HpaII CCGG 3 cut(s) 132, 174, 630
HphI GGTGA 3 cut(s) 121, 173, 175
Hpy188I TCNGA 3 cut(s) 29, 121, 327
Hpy188III TCNNGA 3 cut(s) 91, 275, 608
Hpy99I CGWCG 1 cut(s) 29
HpyAV CCTTC 1 cut(s) 8
HpyCH4III ACNGT 3 cut(s) 77, 167, 488
HpyCH4IV ACGT 1 cut(s) 24
HpyCH4V TGCA 1 cut(s) 636
HpyF10VI GCNNNNNNNGC 7 cut(s) 141, 150, 153, 245, 289, 433, 630
HpyF3I CTNAG 3 cut(s) 345, 420, 428
HpySE526I ACGT 1 cut(s) 24
Hsp92I GRCGYC 1 cut(s) 237
Hsp92II CATG 5 cut(s) 56, 296, 686, 720, 727
Ksp22I TGATCA 1 cut(s) 726
Kzo9I GATC 3 cut(s) 29, 33, 726
LmnI GCTCC 3 cut(s) 140, 176, 289
Lsp1109I GCAGC 7 cut(s) 153, 156, 165, 168, 194, 436, 620
LweI GCATC 1 cut(s) 376
MaeI CTAG 3 cut(s) 9, 321, 354
MaeII ACGT 1 cut(s) 24
MaeIII GTNAC 3 cut(s) 161, 482, 593
MalI GATC 3 cut(s) 31, 35, 728
MboI GATC 3 cut(s) 29, 33, 726
MboII GAAGA 2 cut(s) 274, 498
MluCI AATT 3 cut(s) 334, 412, 439
MlyI GAGTC 2 cut(s) 62, 412
MmeI TCCRAC 1 cut(s) 7
MroXI GAANNNNTTC 1 cut(s) 455
MseI TTAA 1 cut(s) 739
MslI CAYNNNNRTG 1 cut(s) 51
MspA1I CMGCKG 2 cut(s) 159, 447
MspI CCGG 3 cut(s) 132, 174, 630
MspR9I CCNGG 2 cut(s) 212, 630
MvaI CCWGG 1 cut(s) 212
MwoI GCNNNNNNNGC 7 cut(s) 141, 150, 153, 245, 289, 433, 630
NciI CCSGG 1 cut(s) 630
NcoI CCATGG 1 cut(s) 682
NdeII GATC 3 cut(s) 29, 33, 726
NlaIII CATG 5 cut(s) 56, 296, 686, 720, 727
NlaIV GGNNCC 3 cut(s) 6, 136, 315
NmuCI GTSAC 2 cut(s) 161, 593
NspV TTCGAA 1 cut(s) 338
PceI AGGCCT 1 cut(s) 379
PcsI WCGNNNNNNNCGW 1 cut(s) 77
PdmI GAANNNNTTC 1 cut(s) 455
PfeI GAWTC 5 cut(s) 116, 271, 456, 573, 604
PleI GAGTC 2 cut(s) 62, 411
PpsI GAGTC 2 cut(s) 62, 411
PshAI GACNNNNGTC 1 cut(s) 677
Psp6I CCWGG 1 cut(s) 210
PspGI CCWGG 1 cut(s) 210
PspN4I GGNNCC 3 cut(s) 6, 136, 315
PspPI GGNCC 1 cut(s) 5
PstI CTGCAG 1 cut(s) 638
PstNI CAGNNNCTG 2 cut(s) 406, 582
RseI CAYNNNNRTG 1 cut(s) 51
SaqAI TTAA 1 cut(s) 739
Sau3AI GATC 3 cut(s) 29, 33, 726
Sau96I GGNCC 1 cut(s) 5
SchI GAGTC 2 cut(s) 62, 412
ScrFI CCNGG 2 cut(s) 212, 630
SfaNI GCATC 1 cut(s) 376
SfcI CTRYAG 1 cut(s) 634
SfuI TTCGAA 1 cut(s) 338
SmiMI CAYNNNNRTG 1 cut(s) 51
SmlI CTYRAG 1 cut(s) 608
SmoI CTYRAG 1 cut(s) 608
Sse9I AATT 3 cut(s) 334, 412, 439
SseBI AGGCCT 1 cut(s) 379
SsiI CCGC 8 cut(s) 108, 159, 233, 245, 248, 281, 447, 500
SspMI CTAG 3 cut(s) 9, 321, 354
StuI AGGCCT 1 cut(s) 379
StyD4I CCNGG 2 cut(s) 210, 628
StyI CCWWGG 2 cut(s) 240, 682
TaaI ACNGT 3 cut(s) 77, 167, 488
TaiI ACGT 1 cut(s) 27
TaqI TCGA 3 cut(s) 32, 71, 338
TasI AATT 3 cut(s) 334, 412, 439
TauI GCSGC 3 cut(s) 111, 248, 283
TfiI GAWTC 5 cut(s) 116, 271, 456, 573, 604
Tru1I TTAA 1 cut(s) 739
Tru9I TTAA 1 cut(s) 739
TscAI CASTG 2 cut(s) 353, 493
TseFI GTSAC 2 cut(s) 161, 593
TseI GCWGC 7 cut(s) 141, 144, 153, 156, 207, 424, 633
Tsp45I GTSAC 2 cut(s) 161, 593
TspDTI ATGAA 2 cut(s) 309, 705
TspGWI ACGGA 1 cut(s) 69
TspRI CASTG 2 cut(s) 353, 493
XagI CCTNNNNNAGG 1 cut(s) 12
XapI RAATTY 2 cut(s) 334, 439
XmnI GAANNNNTTC 1 cut(s) 455
XspI CTAG 3 cut(s) 9, 321, 354
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.