Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8203816.1

Orthogroup ID

OG0005751

Physical Location & Seq

Genomic Coordinates Reverse (-)

1 .. 716

Gene Structure 716 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8203816.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 653 bp

ccaccaccaccaccaccatgacagcgatttggactcgaacagtccgtccagcttcacgagtagtgtgttgggcggccacgattcggagactttcaccggctccagcagcagcagtagcagcagcggtgactgttgctccggtaatatcaccgaggaggatgaggatgatggctgcctggatgattgggaggctgtggcggacgccttggcggcagatgagaagccgaagaaccagaatccagagccgcaaagggagcatgaagcgattgcgaaatcggttcctgctagtcagattgagaattcgaaacctcagtgtgctagagctatgccgaaagcgtggaggcctgatgatgcttttcgtccccagagtctgcccaatttggctaagcagctcagcttgccgaattccagcgggaaacgattcggtggtggtgttgcgtggggctgtaacagtgtggtatctccgccgtcttcgtgtcctatatgctacgaggatttggacttgacagacaccagcttcttgccctgcttgtgtggattcaggctctgccttttctgtcacaagaggattcttgagggggatggtcgctgtcccggctgcaggaagccctatgagaatgagcctgttgaggcagagacaagtgtccatggag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000075 GO:0000077 GO:0000278 GO:0000288 GO:0000289 GO:0000956 GO:0002682 GO:0003674 GO:0003824 GO:0004842 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006139 GO:0006401 GO:0006402 GO:0006464 GO:0006508 GO:0006511 GO:0006725 GO:0006807 GO:0006950 GO:0006974 GO:0006977 GO:0007049 GO:0007093 GO:0007154 GO:0007165 GO:0007346 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009892 GO:0009987 GO:0010468 GO:0010564 GO:0010605 GO:0010629 GO:0010948 GO:0016070 GO:0016071 GO:0016567 GO:0016740 GO:0019222 GO:0019439 GO:0019538 GO:0019787 GO:0019941 GO:0022402 GO:0023052 GO:0030163 GO:0030330 GO:0031570 GO:0031571 GO:0032446 GO:0033554 GO:0034641 GO:0034655 GO:0035556 GO:0036211 GO:0042770 GO:0043170 GO:0043412 GO:0043632 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0044270 GO:0044424 GO:0044444 GO:0044464 GO:0044773 GO:0044774 GO:0044783 GO:0044819 GO:0045595 GO:0045637 GO:0045652 GO:0045786 GO:0045787 GO:0045930 GO:0046483 GO:0046700 GO:0048518 GO:0048519 GO:0048522 GO:0048523 GO:0050789 GO:0050793 GO:0050794 GO:0050896 GO:0051239 GO:0051603 GO:0051716 GO:0051726 GO:0051865 GO:0060255 GO:0065007 GO:0070647 GO:0071156 GO:0071158 GO:0071704 GO:0072331 GO:0072395 GO:0072401 GO:0072413 GO:0072422 GO:0072431 GO:0090068 GO:0090304 GO:0140096 GO:1901360 GO:1901361 GO:1901564 GO:1901565 GO:1901575 GO:1901987 GO:1901988 GO:1901990 GO:1901991 GO:1902400 GO:1902402 GO:1902403 GO:1902806 GO:1902807 GO:1903047 GO:1903706 GO:2000026 GO:2000045 GO:2000134

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

zf-RING_4

Protein Analysis

217

Amino Acids

23.37

Weight (kDa)

4.88

Isoelectric Point (pI)

64.94

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005751)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G48070 AT3G48070 AT3G48070 AT5G62910 AT5G62910
fragaria_vesca	FvH4_5g16220 FvH4_5g16220 FvH4_5g16220 FvH4_5g16220
malus_domestica	MD06G1182900.v1.1 MD14G1188800.v1.1
prunus_persica	Prupe.5G181100_v2.0.a1 Prupe.5G181100_v2.0.a1 Prupe.5G181100_v2.0.a1 Prupe.5G181100_v2.0.a1
pyrus_communis	pycom06g16190 pycom14g15650
rosa_chinensis	RchiOBHm_Chr7g0179881
rosa_laevigata	RLG00000005315
rosa_multiflora	Rmu_co8203816.1_g000001 Rmu_sc0027293.1_g000002
rosa_roxburghii	Rroxscaffold_3G00273370
rosa_rugosa	Rorug06G0428800
rosa_samantha	Rh7AG029000 Rh7BG028100 Rh7CG029700 Rh7DG029300
rosa_wichuraiana	Rw7G002320

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	7 cut(s)	73, 124, 198, 210, 246, 412, 465
AcoI	YGGCCR	1 cut(s)	74
AcsI	RAATTY	2 cut(s)	299, 404
AcyI	GRCGYC	1 cut(s)	202
AfiI	CCNNNNNNNGG	2 cut(s)	83, 601
AjnI	CCWGG	1 cut(s)	175
AloI	GAACNNNNNNTCC	2 cut(s)	30, 62
AluBI	AGCT	5 cut(s)	52, 324, 392, 397, 517
AluI	AGCT	5 cut(s)	52, 324, 392, 397, 517
Alw26I	GTCTC	2 cut(s)	81, 630
AlwNI	CAGNNNCTG	2 cut(s)	371, 547
AoxI	GGCC	2 cut(s)	74, 342
ApeKI	GCWGC	7 cut(s)	106, 109, 118, 121, 172, 389, 598
ApoI	RAATTY	2 cut(s)	299, 404
ArsI	GACNNNNNNTTYG	2 cut(s)	30, 62
Asp700I	GAANNNNTTC	1 cut(s)	420
AsuC2I	CCSGG	1 cut(s)	595
AsuHPI	GGTGA	3 cut(s)	86, 138, 140
AsuII	TTCGAA	1 cut(s)	303
BauI	CACGAG	1 cut(s)	56
BbsI	GAAGAC	1 cut(s)	463
BbvI	GCAGC	7 cut(s)	118, 121, 130, 133, 159, 401, 585
BccI	CCATC	2 cut(s)	162, 576
BceAI	ACGGC	1 cut(s)	452
BciT130I	CCWGG	1 cut(s)	177
BcnI	CCSGG	1 cut(s)	595
BcoDI	GTCTC	2 cut(s)	81, 630
BfaI	CTAG	2 cut(s)	286, 319
BfmI	CTRYAG	1 cut(s)	599
BglI	GCCNNNNNGGC	1 cut(s)	210
BlpI	GCTNAGC	2 cut(s)	385, 393
Bme1390I	CCNGG	2 cut(s)	177, 595
BmiI	GGNNCC	2 cut(s)	101, 280
BmrFI	CCNGG	2 cut(s)	177, 595
BmsI	GCATC	1 cut(s)	341
BoxI	GACNNNNGTC	1 cut(s)	642
BpiI	GAAGAC	1 cut(s)	463
BpmI	CTGGAG	1 cut(s)	86
Bpu1102I	GCTNAGC	2 cut(s)	385, 393
Bpu14I	TTCGAA	1 cut(s)	303
BpuEI	CTTGAG	1 cut(s)	594
BpuMI	CCSGG	1 cut(s)	595
BsaHI	GRCGYC	1 cut(s)	202
BsaJI	CCNNGG	3 cut(s)	151, 205, 647
BsaWI	WCCGGW	1 cut(s)	138
BsaXI	ACNNNNNCTCC	2 cut(s)	120, 150
Bsc4I	CCNNNNNNNGG	2 cut(s)	83, 601
Bse118I	RCCGGY	1 cut(s)	96
BseBI	CCWGG	1 cut(s)	177
BseDI	CCNNGG	3 cut(s)	151, 205, 647
BseGI	GGATG	4 cut(s)	164, 170, 185, 587
BseLI	CCNNNNNNNGG	2 cut(s)	83, 601
BseMII	CTCAG	2 cut(s)	324, 407
BseRI	GAGGAG	1 cut(s)	168
BseXI	GCAGC	7 cut(s)	118, 121, 130, 133, 159, 401, 585
BshFI	GGCC	2 cut(s)	76, 344
BsiSI	CCGG	3 cut(s)	97, 139, 595
BslFI	GGGAC	2 cut(s)	346, 577
BslI	CCNNNNNNNGG	2 cut(s)	83, 601
BsmAI	GTCTC	2 cut(s)	81, 630
BsmFI	GGGAC	2 cut(s)	346, 577
BsnI	GGCC	2 cut(s)	76, 344
Bsp119I	TTCGAA	1 cut(s)	303
Bsp1720I	GCTNAGC	2 cut(s)	385, 393
Bsp19I	CCATGG	1 cut(s)	647
BspACI	CCGC	7 cut(s)	73, 124, 198, 210, 246, 412, 465
BspANI	GGCC	2 cut(s)	76, 344
BspCNI	CTCAG	2 cut(s)	323, 406
BspLI	GGNNCC	2 cut(s)	101, 280
BspMAI	CTGCAG	1 cut(s)	603
BspT104I	TTCGAA	1 cut(s)	303
BsrFI	RCCGGY	1 cut(s)	96
BssAI	RCCGGY	1 cut(s)	96
BssECI	CCNNGG	3 cut(s)	151, 205, 647
BssNI	GRCGYC	1 cut(s)	202
BssSI	CACGAG	1 cut(s)	56
BssT1I	CCWWGG	2 cut(s)	205, 647
Bst2BI	CACGAG	1 cut(s)	56
Bst2UI	CCWGG	1 cut(s)	177
Bst4CI	ACNGT	3 cut(s)	42, 132, 453
BstACI	GRCGYC	1 cut(s)	202
BstBI	TTCGAA	1 cut(s)	303
BstC8I	GCNNGC	1 cut(s)	399
BstDEI	CTNAG	3 cut(s)	310, 385, 393
BstDSI	CCRYGG	1 cut(s)	647
BstF5I	GGATG	4 cut(s)	164, 170, 185, 587
BstMAI	GTCTC	2 cut(s)	81, 630
BstMWI	GCNNNNNNNGC	7 cut(s)	106, 115, 118, 210, 254, 398, 595
BstNI	CCWGG	1 cut(s)	177
BstPAI	GACNNNNGTC	1 cut(s)	642
BstSCI	CCNGG	2 cut(s)	175, 593
BstSFI	CTRYAG	1 cut(s)	599
BstV1I	GCAGC	7 cut(s)	118, 121, 130, 133, 159, 401, 585
BstV2I	GAAGAC	1 cut(s)	463
BsuRI	GGCC	2 cut(s)	76, 344
BtgI	CCRYGG	1 cut(s)	647
BtsCI	GGATG	4 cut(s)	164, 170, 185, 587
BtsIMutI	CAGTG	2 cut(s)	318, 458
Cac8I	GCNNGC	1 cut(s)	399
CaiI	CAGNNNCTG	2 cut(s)	371, 547
Cfr10I	RCCGGY	1 cut(s)	96
CseI	GACGC	1 cut(s)	210
CviAII	CATG	3 cut(s)	18, 258, 648
DdeI	CTNAG	3 cut(s)	310, 385, 393
EaeI	YGGCCR	1 cut(s)	74
EciI	GGCGGA	2 cut(s)	213, 454
Eco130I	CCWWGG	2 cut(s)	205, 647
Eco147I	AGGCCT	1 cut(s)	344
EcoRI	GAATTC	2 cut(s)	299, 404
EcoRII	CCWGG	1 cut(s)	175
EcoT14I	CCWWGG	2 cut(s)	205, 647
ErhI	CCWWGG	2 cut(s)	205, 647
FaeI	CATG	3 cut(s)	21, 261, 651
FaiI	YATR	7 cut(s)	19, 259, 327, 483, 485, 613, 649
FaqI	GGGAC	2 cut(s)	346, 577
FatI	CATG	3 cut(s)	17, 257, 647
FauI	CCCGC	1 cut(s)	405
FokI	GGATG	4 cut(s)	171, 177, 192, 594
FspBI	CTAG	2 cut(s)	286, 319
GsuI	CTGGAG	1 cut(s)	86
HaeIII	GGCC	2 cut(s)	76, 344
HapII	CCGG	3 cut(s)	97, 139, 595
HgaI	GACGC	1 cut(s)	210
Hin1I	GRCGYC	1 cut(s)	202
Hin1II	CATG	3 cut(s)	21, 261, 651
HinfI	GANTC	7 cut(s)	33, 81, 236, 368, 421, 538, 569
HpaII	CCGG	3 cut(s)	97, 139, 595
HphI	GGTGA	3 cut(s)	86, 138, 140
Hpy188I	TCNGA	2 cut(s)	86, 292
Hpy188III	TCNNGA	3 cut(s)	56, 240, 573
HpyCH4III	ACNGT	3 cut(s)	42, 132, 453
HpyCH4V	TGCA	1 cut(s)	601
HpyF10VI	GCNNNNNNNGC	7 cut(s)	106, 115, 118, 210, 254, 398, 595
HpyF3I	CTNAG	3 cut(s)	310, 385, 393
Hsp92I	GRCGYC	1 cut(s)	202
Hsp92II	CATG	3 cut(s)	21, 261, 651
LmnI	GCTCC	3 cut(s)	105, 141, 254
Lsp1109I	GCAGC	7 cut(s)	118, 121, 130, 133, 159, 401, 585
LweI	GCATC	1 cut(s)	341
MaeI	CTAG	2 cut(s)	286, 319
MaeIII	GTNAC	3 cut(s)	126, 447, 558
MboII	GAAGA	2 cut(s)	239, 463
MluCI	AATT	3 cut(s)	299, 377, 404
MlyI	GAGTC	2 cut(s)	27, 377
MroXI	GAANNNNTTC	1 cut(s)	420
MslI	CAYNNNNRTG	1 cut(s)	16
MspA1I	CMGCKG	2 cut(s)	124, 412
MspI	CCGG	3 cut(s)	97, 139, 595
MspR9I	CCNGG	2 cut(s)	177, 595
MvaI	CCWGG	1 cut(s)	177
MwoI	GCNNNNNNNGC	7 cut(s)	106, 115, 118, 210, 254, 398, 595
NciI	CCSGG	1 cut(s)	595
NcoI	CCATGG	1 cut(s)	647
NlaIII	CATG	3 cut(s)	21, 261, 651
NlaIV	GGNNCC	2 cut(s)	101, 280
NmuCI	GTSAC	2 cut(s)	126, 558
NspV	TTCGAA	1 cut(s)	303
PceI	AGGCCT	1 cut(s)	344
PcsI	WCGNNNNNNNCGW	1 cut(s)	42
PdmI	GAANNNNTTC	1 cut(s)	420
PfeI	GAWTC	5 cut(s)	81, 236, 421, 538, 569
PleI	GAGTC	2 cut(s)	27, 376
PpsI	GAGTC	2 cut(s)	27, 376
PshAI	GACNNNNGTC	1 cut(s)	642
Psp6I	CCWGG	1 cut(s)	175
PspGI	CCWGG	1 cut(s)	175
PspN4I	GGNNCC	2 cut(s)	101, 280
PstI	CTGCAG	1 cut(s)	603
PstNI	CAGNNNCTG	2 cut(s)	371, 547
RseI	CAYNNNNRTG	1 cut(s)	16
SchI	GAGTC	2 cut(s)	27, 377
ScrFI	CCNGG	2 cut(s)	177, 595
SetI	ASST	6 cut(s)	54, 311, 326, 394, 399, 519
SfaNI	GCATC	1 cut(s)	341
SfcI	CTRYAG	1 cut(s)	599
SfuI	TTCGAA	1 cut(s)	303
SmiMI	CAYNNNNRTG	1 cut(s)	16
SmlI	CTYRAG	1 cut(s)	573
SmoI	CTYRAG	1 cut(s)	573
Sse9I	AATT	3 cut(s)	299, 377, 404
SseBI	AGGCCT	1 cut(s)	344
SsiI	CCGC	7 cut(s)	73, 124, 198, 210, 246, 412, 465
SspMI	CTAG	2 cut(s)	286, 319
StuI	AGGCCT	1 cut(s)	344
StyD4I	CCNGG	2 cut(s)	175, 593
StyI	CCWWGG	2 cut(s)	205, 647
TaaI	ACNGT	3 cut(s)	42, 132, 453
TaqI	TCGA	2 cut(s)	36, 303
TasI	AATT	3 cut(s)	299, 377, 404
TauI	GCSGC	3 cut(s)	76, 213, 248
TfiI	GAWTC	5 cut(s)	81, 236, 421, 538, 569
TscAI	CASTG	2 cut(s)	318, 458
TseFI	GTSAC	2 cut(s)	126, 558
TseI	GCWGC	7 cut(s)	106, 109, 118, 121, 172, 389, 598
Tsp45I	GTSAC	2 cut(s)	126, 558
TspDTI	ATGAA	1 cut(s)	274
TspGWI	ACGGA	1 cut(s)	34
TspRI	CASTG	2 cut(s)	318, 458
XapI	RAATTY	2 cut(s)	299, 404
XmnI	GAANNNNTTC	1 cut(s)	420
XspI	CTAG	2 cut(s)	286, 319

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.