Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0027293.1

Orthogroup ID

OG0005751

Physical Location & Seq

Genomic Coordinates Reverse (-)

2775 .. 3954

Gene Structure 1180 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0027293.1_g000002.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 966 bp

atggtttccgactcgatcaccaacgtttccattccttcggccccaaaaagcgccagggatttgggcaagaagaagagggccaggtcggcgaaattgaagcagtgcaagctggacgttcgccgcgagcaatggctttcttcaggtgcggtggtgaagaaggagtgcaaggaggaacagaacggcggtgttcaaggtcggagagagcggaatagccctagggaaatggggcctagagaaggagagaacgtcggatcgatccaccaccaccaccaccaccatgacagcgatttggactcgaacagtccgtccagcttcacgagtagtgtgttgggcggccacgattcggagactttcaccggctccagcagcagcagtagcagcagcggtgactgttgctccggtaatatcaccgaggaggatgaggatgatggctgcctggatgattgggaggctgtggcggacgccttggcggcggatgagaagccgaagaaccagaatccagagccgcaaagggagcatgaagcgattgcgaaatcggttcctgctagtcagattgagaattcgaaacctcagtgtgctagagctatgccgaaagcgtggaggcctgatgatgcttttcgtccccagagtctgcccaatttggctaagcagctcagcttgccgaattccagcgggaaacgattcggtggtggtgttgcgtggggctgtaacagtgtggtatctccgccgtcttcgtgtcctatatgctacgaggatttggacttgacagacaccagcttcttgccctgcttgtgtggattcaggctctgccttttctgtcacaagaggattcttgagggggatggtcgctgtcccggctgcaggaagccctatgagaatgagcctgttgaggcagagacaagtgtccatggaggtagtcttacattcaggttgcctcgttcatgtagcatgatcacaaggtcttaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000075 GO:0000077 GO:0000278 GO:0000288 GO:0000289 GO:0000956 GO:0002682 GO:0003674 GO:0003824 GO:0004842 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006139 GO:0006401 GO:0006402 GO:0006464 GO:0006508 GO:0006511 GO:0006725 GO:0006807 GO:0006950 GO:0006974 GO:0006977 GO:0007049 GO:0007093 GO:0007154 GO:0007165 GO:0007346 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009892 GO:0009987 GO:0010468 GO:0010564 GO:0010605 GO:0010629 GO:0010948 GO:0016070 GO:0016071 GO:0016567 GO:0016740 GO:0019222 GO:0019439 GO:0019538 GO:0019787 GO:0019941 GO:0022402 GO:0023052 GO:0030163 GO:0030330 GO:0031570 GO:0031571 GO:0032446 GO:0033554 GO:0034641 GO:0034655 GO:0035556 GO:0036211 GO:0042770 GO:0043170 GO:0043412 GO:0043632 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0044270 GO:0044424 GO:0044444 GO:0044464 GO:0044773 GO:0044774 GO:0044783 GO:0044819 GO:0045595 GO:0045637 GO:0045652 GO:0045786 GO:0045787 GO:0045930 GO:0046483 GO:0046700 GO:0048518 GO:0048519 GO:0048522 GO:0048523 GO:0050789 GO:0050793 GO:0050794 GO:0050896 GO:0051239 GO:0051603 GO:0051716 GO:0051726 GO:0051865 GO:0060255 GO:0065007 GO:0070647 GO:0071156 GO:0071158 GO:0071704 GO:0072331 GO:0072395 GO:0072401 GO:0072413 GO:0072422 GO:0072431 GO:0090068 GO:0090304 GO:0140096 GO:1901360 GO:1901361 GO:1901564 GO:1901565 GO:1901575 GO:1901987 GO:1901988 GO:1901990 GO:1901991 GO:1902400 GO:1902402 GO:1902403 GO:1902806 GO:1902807 GO:1903047 GO:1903706 GO:2000026 GO:2000045 GO:2000134

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

zf-RING_4

Protein Analysis

321

Amino Acids

34.91

Weight (kDa)

6.27

Isoelectric Point (pI)

63.96

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005751)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G48070 AT3G48070 AT3G48070 AT5G62910 AT5G62910
fragaria_vesca	FvH4_5g16220 FvH4_5g16220 FvH4_5g16220 FvH4_5g16220
malus_domestica	MD06G1182900.v1.1 MD14G1188800.v1.1
prunus_persica	Prupe.5G181100_v2.0.a1 Prupe.5G181100_v2.0.a1 Prupe.5G181100_v2.0.a1 Prupe.5G181100_v2.0.a1
pyrus_communis	pycom06g16190 pycom14g15650
rosa_chinensis	RchiOBHm_Chr7g0179881
rosa_laevigata	RLG00000005315
rosa_multiflora	Rmu_co8203816.1_g000001 Rmu_sc0027293.1_g000002
rosa_roxburghii	Rroxscaffold_3G00273370
rosa_rugosa	Rorug06G0428800
rosa_samantha	Rh7AG029000 Rh7BG028100 Rh7CG029700 Rh7DG029300
rosa_wichuraiana	Rw7G002320

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	205
AccII	CGCG	1 cut(s)	123
AclI	AACGTT	1 cut(s)	24
AclWI	GGATC	2 cut(s)	250, 259
AcoI	YGGCCR	1 cut(s)	334
AcsI	RAATTY	2 cut(s)	559, 664
AcuI	CTGAAG	1 cut(s)	123
AcyI	GRCGYC	1 cut(s)	462
AfiI	CCNNNNNNNGG	3 cut(s)	236, 343, 861
AgsI	TTSAA	2 cut(s)	97, 191
AjnI	CCWGG	3 cut(s)	53, 80, 435
AloI	GAACNNNNNNTCC	2 cut(s)	290, 322
AluBI	AGCT	6 cut(s)	109, 312, 584, 652, 657, 777
AluI	AGCT	6 cut(s)	109, 312, 584, 652, 657, 777
Alw26I	GTCTC	2 cut(s)	341, 890
AlwI	GGATC	2 cut(s)	250, 259
AlwNI	CAGNNNCTG	2 cut(s)	631, 807
AoxI	GGCC	5 cut(s)	39, 78, 227, 334, 602
ApeKI	GCWGC	7 cut(s)	366, 369, 378, 381, 432, 649, 858
ApoI	RAATTY	2 cut(s)	559, 664
ArsI	GACNNNNNNTTYG	2 cut(s)	290, 322
Asp700I	GAANNNNTTC	1 cut(s)	680
AspA2I	CCTAGG	1 cut(s)	215
AspLEI	GCGC	1 cut(s)	53
AspS9I	GGNCC	3 cut(s)	40, 78, 227
AsuC2I	CCSGG	1 cut(s)	855
AsuHPI	GGTGA	5 cut(s)	10, 163, 346, 398, 400
AsuII	TTCGAA	1 cut(s)	563
AvrII	CCTAGG	1 cut(s)	215
BauI	CACGAG	1 cut(s)	316
BbsI	GAAGAC	1 cut(s)	723
BbvI	GCAGC	7 cut(s)	378, 381, 390, 393, 419, 661, 845
BccI	CCATC	2 cut(s)	422, 836
BceAI	ACGGC	2 cut(s)	196, 712
BciT130I	CCWGG	3 cut(s)	55, 82, 437
BclI	TGATCA	1 cut(s)	951
BcnI	CCSGG	1 cut(s)	855
BcoDI	GTCTC	2 cut(s)	341, 890
BfaI	CTAG	4 cut(s)	216, 231, 546, 579
BfmI	CTRYAG	1 cut(s)	859
BfoI	RGCGCY	1 cut(s)	54
BglI	GCCNNNNNGGC	2 cut(s)	86, 470
BlnI	CCTAGG	1 cut(s)	215
BlpI	GCTNAGC	2 cut(s)	645, 653
Bme1390I	CCNGG	4 cut(s)	55, 82, 437, 855
BmgT120I	GGNCC	3 cut(s)	40, 78, 227
BmiI	GGNNCC	4 cut(s)	42, 228, 361, 540
BmrFI	CCNGG	4 cut(s)	55, 82, 437, 855
BmsI	GCATC	1 cut(s)	601
BoxI	GACNNNNGTC	1 cut(s)	902
BpiI	GAAGAC	1 cut(s)	723
BpmI	CTGGAG	1 cut(s)	346
Bpu1102I	GCTNAGC	2 cut(s)	645, 653
Bpu14I	TTCGAA	1 cut(s)	563
BpuEI	CTTGAG	1 cut(s)	854
BpuMI	CCSGG	1 cut(s)	855
Bsa29I	ATCGAT	1 cut(s)	254
BsaHI	GRCGYC	1 cut(s)	462
BsaJI	CCNNGG	5 cut(s)	54, 215, 411, 465, 907
BsaWI	WCCGGW	1 cut(s)	398
BsaXI	ACNNNNNCTCC	4 cut(s)	231, 261, 380, 410
Bsc4I	CCNNNNNNNGG	3 cut(s)	236, 343, 861
Bse118I	RCCGGY	1 cut(s)	356
Bse3DI	GCAATG	1 cut(s)	134
BseBI	CCWGG	3 cut(s)	55, 82, 437
BseCI	ATCGAT	1 cut(s)	254
BseDI	CCNNGG	5 cut(s)	54, 215, 411, 465, 907
BseGI	GGATG	5 cut(s)	424, 430, 445, 481, 847
BseLI	CCNNNNNNNGG	3 cut(s)	236, 343, 861
BseMI	GCAATG	1 cut(s)	134
BseMII	CTCAG	2 cut(s)	584, 667
BseRI	GAGGAG	1 cut(s)	428
BseXI	GCAGC	7 cut(s)	378, 381, 390, 393, 419, 661, 845
Bsh1236I	CGCG	1 cut(s)	123
BshFI	GGCC	5 cut(s)	41, 80, 229, 336, 604
BshVI	ATCGAT	1 cut(s)	254
BsiSI	CCGG	3 cut(s)	357, 399, 855
BslFI	GGGAC	2 cut(s)	606, 837
BslI	CCNNNNNNNGG	3 cut(s)	236, 343, 861
BsmAI	GTCTC	2 cut(s)	341, 890
BsmFI	GGGAC	2 cut(s)	606, 837
BsnI	GGCC	5 cut(s)	41, 80, 229, 336, 604
Bsp119I	TTCGAA	1 cut(s)	563
Bsp143I	GATC	4 cut(s)	15, 251, 255, 951
Bsp1720I	GCTNAGC	2 cut(s)	645, 653
Bsp19I	CCATGG	1 cut(s)	907
BspANI	GGCC	5 cut(s)	41, 80, 229, 336, 604
BspCNI	CTCAG	2 cut(s)	583, 666
BspDI	ATCGAT	1 cut(s)	254
BspFNI	CGCG	1 cut(s)	123
BspLI	GGNNCC	4 cut(s)	42, 228, 361, 540
BspMAI	CTGCAG	1 cut(s)	863
BspPI	GGATC	2 cut(s)	250, 259
BspT104I	TTCGAA	1 cut(s)	563
BsrBI	CCGCTC	1 cut(s)	205
BsrDI	GCAATG	1 cut(s)	134
BsrFI	RCCGGY	1 cut(s)	356
BssAI	RCCGGY	1 cut(s)	356
BssECI	CCNNGG	5 cut(s)	54, 215, 411, 465, 907
BssMI	GATC	4 cut(s)	15, 251, 255, 951
BssNI	GRCGYC	1 cut(s)	462
BssSI	CACGAG	1 cut(s)	316
BssT1I	CCWWGG	3 cut(s)	215, 465, 907
Bst2BI	CACGAG	1 cut(s)	316
Bst2UI	CCWGG	3 cut(s)	55, 82, 437
Bst4CI	ACNGT	3 cut(s)	302, 392, 713
Bst6I	CTCTTC	1 cut(s)	68
BstACI	GRCGYC	1 cut(s)	462
BstBI	TTCGAA	1 cut(s)	563
BstC8I	GCNNGC	3 cut(s)	107, 125, 659
BstDEI	CTNAG	3 cut(s)	570, 645, 653
BstDSI	CCRYGG	1 cut(s)	907
BstENI	CCTNNNNNAGG	1 cut(s)	234
BstF5I	GGATG	5 cut(s)	424, 430, 445, 481, 847
BstFNI	CGCG	1 cut(s)	123
BstH2I	RGCGCY	1 cut(s)	54
BstHHI	GCGC	1 cut(s)	53
BstKTI	GATC	4 cut(s)	18, 254, 258, 954
BstMAI	GTCTC	2 cut(s)	341, 890
BstMBI	GATC	4 cut(s)	15, 251, 255, 951
BstMWI	GCNNNNNNNGC	9 cut(s)	86, 106, 366, 375, 378, 470, 514, 658, 855
BstNI	CCWGG	3 cut(s)	55, 82, 437
BstPAI	GACNNNNGTC	1 cut(s)	902
BstSCI	CCNGG	4 cut(s)	53, 80, 435, 853
BstSFI	CTRYAG	1 cut(s)	859
BstUI	CGCG	1 cut(s)	123
BstV1I	GCAGC	7 cut(s)	378, 381, 390, 393, 419, 661, 845
BstV2I	GAAGAC	1 cut(s)	723
BstXI	CCANNNNNNTGG	1 cut(s)	61
Bsu15I	ATCGAT	1 cut(s)	254
BsuRI	GGCC	5 cut(s)	41, 80, 229, 336, 604
BsuTUI	ATCGAT	1 cut(s)	254
BtgI	CCRYGG	1 cut(s)	907
BtsCI	GGATG	5 cut(s)	424, 430, 445, 481, 847
BtsI	GCAGTG	1 cut(s)	107
BtsIMutI	CAGTG	3 cut(s)	107, 578, 718
Cac8I	GCNNGC	3 cut(s)	107, 125, 659
CaiI	CAGNNNCTG	2 cut(s)	631, 807
CfoI	GCGC	1 cut(s)	53
Cfr10I	RCCGGY	1 cut(s)	356
Cfr13I	GGNCC	3 cut(s)	40, 78, 227
ClaI	ATCGAT	1 cut(s)	254
CseI	GACGC	1 cut(s)	470
CviAII	CATG	5 cut(s)	278, 518, 908, 942, 949
DdeI	CTNAG	3 cut(s)	570, 645, 653
DpnI	GATC	4 cut(s)	17, 253, 257, 953
DpnII	GATC	4 cut(s)	15, 251, 255, 951
EaeI	YGGCCR	1 cut(s)	334
Eam1104I	CTCTTC	1 cut(s)	68
EarI	CTCTTC	1 cut(s)	68
EciI	GGCGGA	3 cut(s)	473, 488, 714
Eco130I	CCWWGG	3 cut(s)	215, 465, 907
Eco147I	AGGCCT	1 cut(s)	604
Eco57I	CTGAAG	1 cut(s)	123
EcoNI	CCTNNNNNAGG	1 cut(s)	234
EcoO109I	RGGNCCY	1 cut(s)	227
EcoRI	GAATTC	2 cut(s)	559, 664
EcoRII	CCWGG	3 cut(s)	53, 80, 435
EcoT14I	CCWWGG	3 cut(s)	215, 465, 907
ErhI	CCWWGG	3 cut(s)	215, 465, 907
FaeI	CATG	5 cut(s)	281, 521, 911, 945, 952
FaiI	YATR	9 cut(s)	279, 519, 587, 743, 745, 873, 909, 943, 950
FaqI	GGGAC	2 cut(s)	606, 837
FatI	CATG	5 cut(s)	277, 517, 907, 941, 948
FauI	CCCGC	1 cut(s)	665
FbaI	TGATCA	1 cut(s)	951
FokI	GGATG	5 cut(s)	431, 437, 452, 488, 854
FspBI	CTAG	4 cut(s)	216, 231, 546, 579
GlaI	GCGC	1 cut(s)	52
GsuI	CTGGAG	1 cut(s)	346
HaeII	RGCGCY	1 cut(s)	54
HaeIII	GGCC	5 cut(s)	41, 80, 229, 336, 604
HapII	CCGG	3 cut(s)	357, 399, 855
HgaI	GACGC	1 cut(s)	470
HhaI	GCGC	1 cut(s)	53
Hin1I	GRCGYC	1 cut(s)	462
Hin1II	CATG	5 cut(s)	281, 521, 911, 945, 952
Hin6I	GCGC	1 cut(s)	51
HinP1I	GCGC	1 cut(s)	51
HinfI	GANTC	8 cut(s)	11, 293, 341, 496, 628, 681, 798, 829
HpaII	CCGG	3 cut(s)	357, 399, 855
HphI	GGTGA	5 cut(s)	10, 163, 346, 398, 400
Hpy188I	TCNGA	5 cut(s)	10, 198, 251, 346, 552
Hpy188III	TCNNGA	3 cut(s)	316, 500, 833
Hpy99I	CGWCG	1 cut(s)	251
HpyAV	CCTTC	3 cut(s)	45, 151, 230
HpyCH4III	ACNGT	3 cut(s)	302, 392, 713
HpyCH4IV	ACGT	3 cut(s)	24, 114, 246
HpyCH4V	TGCA	3 cut(s)	105, 165, 861
HpyF10VI	GCNNNNNNNGC	9 cut(s)	86, 106, 366, 375, 378, 470, 514, 658, 855
HpyF3I	CTNAG	3 cut(s)	570, 645, 653
HpySE526I	ACGT	3 cut(s)	24, 114, 246
Hsp92I	GRCGYC	1 cut(s)	462
Hsp92II	CATG	5 cut(s)	281, 521, 911, 945, 952
HspAI	GCGC	1 cut(s)	51
Ksp22I	TGATCA	1 cut(s)	951
Kzo9I	GATC	4 cut(s)	15, 251, 255, 951
LmnI	GCTCC	3 cut(s)	365, 401, 514
Lsp1109I	GCAGC	7 cut(s)	378, 381, 390, 393, 419, 661, 845
LweI	GCATC	1 cut(s)	601
MaeI	CTAG	4 cut(s)	216, 231, 546, 579
MaeII	ACGT	3 cut(s)	24, 114, 246
MaeIII	GTNAC	3 cut(s)	386, 707, 818
MalI	GATC	4 cut(s)	17, 253, 257, 953
MbiI	CCGCTC	1 cut(s)	205
MboI	GATC	4 cut(s)	15, 251, 255, 951
MboII	GAAGA	6 cut(s)	82, 85, 129, 166, 499, 723
MluCI	AATT	4 cut(s)	92, 559, 637, 664
MlyI	GAGTC	3 cut(s)	5, 287, 637
MmeI	TCCRAC	3 cut(s)	33, 176, 229
MroXI	GAANNNNTTC	1 cut(s)	680
MseI	TTAA	1 cut(s)	964
MslI	CAYNNNNRTG	1 cut(s)	276
MspA1I	CMGCKG	2 cut(s)	384, 672
MspI	CCGG	3 cut(s)	357, 399, 855
MspR9I	CCNGG	4 cut(s)	55, 82, 437, 855
MvaI	CCWGG	3 cut(s)	55, 82, 437
MvnI	CGCG	1 cut(s)	123
MwoI	GCNNNNNNNGC	9 cut(s)	86, 106, 366, 375, 378, 470, 514, 658, 855
NciI	CCSGG	1 cut(s)	855
NcoI	CCATGG	1 cut(s)	907
NdeII	GATC	4 cut(s)	15, 251, 255, 951
NlaIII	CATG	5 cut(s)	281, 521, 911, 945, 952
NlaIV	GGNNCC	4 cut(s)	42, 228, 361, 540
NmuCI	GTSAC	2 cut(s)	386, 818
NspV	TTCGAA	1 cut(s)	563
PceI	AGGCCT	1 cut(s)	604
PcsI	WCGNNNNNNNCGW	2 cut(s)	120, 302
PdmI	GAANNNNTTC	1 cut(s)	680
PfeI	GAWTC	5 cut(s)	341, 496, 681, 798, 829
PleI	GAGTC	3 cut(s)	5, 287, 636
PpsI	GAGTC	3 cut(s)	5, 287, 636
PshAI	GACNNNNGTC	1 cut(s)	902
Psp1406I	AACGTT	1 cut(s)	24
Psp6I	CCWGG	3 cut(s)	53, 80, 435
PspGI	CCWGG	3 cut(s)	53, 80, 435
PspN4I	GGNNCC	4 cut(s)	42, 228, 361, 540
PspPI	GGNCC	3 cut(s)	40, 78, 227
PstI	CTGCAG	1 cut(s)	863
PstNI	CAGNNNCTG	2 cut(s)	631, 807
RseI	CAYNNNNRTG	1 cut(s)	276
SaqAI	TTAA	1 cut(s)	964
Sau3AI	GATC	4 cut(s)	15, 251, 255, 951
Sau96I	GGNCC	3 cut(s)	40, 78, 227
SchI	GAGTC	3 cut(s)	5, 287, 637
ScrFI	CCNGG	4 cut(s)	55, 82, 437, 855
SfaNI	GCATC	1 cut(s)	601
SfcI	CTRYAG	1 cut(s)	859
SfuI	TTCGAA	1 cut(s)	563
SmiMI	CAYNNNNRTG	1 cut(s)	276
SmlI	CTYRAG	1 cut(s)	833
SmoI	CTYRAG	1 cut(s)	833
Sse9I	AATT	4 cut(s)	92, 559, 637, 664
SseBI	AGGCCT	1 cut(s)	604
SspMI	CTAG	4 cut(s)	216, 231, 546, 579
StuI	AGGCCT	1 cut(s)	604
StyD4I	CCNGG	4 cut(s)	53, 80, 435, 853
StyI	CCWWGG	3 cut(s)	215, 465, 907
TaaI	ACNGT	3 cut(s)	302, 392, 713
TaiI	ACGT	3 cut(s)	27, 117, 249
TaqI	TCGA	4 cut(s)	14, 254, 296, 563
TasI	AATT	4 cut(s)	92, 559, 637, 664
TauI	GCSGC	4 cut(s)	123, 336, 473, 508
TfiI	GAWTC	5 cut(s)	341, 496, 681, 798, 829
Tru1I	TTAA	1 cut(s)	964
Tru9I	TTAA	1 cut(s)	964
TscAI	CASTG	3 cut(s)	107, 578, 718
TseFI	GTSAC	2 cut(s)	386, 818
TseI	GCWGC	7 cut(s)	366, 369, 378, 381, 432, 649, 858
Tsp45I	GTSAC	2 cut(s)	386, 818
TspDTI	ATGAA	2 cut(s)	534, 930
TspGWI	ACGGA	1 cut(s)	294
TspRI	CASTG	3 cut(s)	107, 578, 718
XagI	CCTNNNNNAGG	1 cut(s)	234
XapI	RAATTY	2 cut(s)	559, 664
XmaJI	CCTAGG	1 cut(s)	215
XmnI	GAANNNNTTC	1 cut(s)	680
XspI	CTAG	4 cut(s)	216, 231, 546, 579

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.