RLG00000005315

RING/Ubox like zinc-binding domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr1
OG0005751
Physical Location & Seq
Forward (+)
66738327 .. 66739516
1190 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000005315

Sequence Viewer

Length: 963 bp
ATGGTTTCCGATTCGATCACCAACGCTTCCATTCCTTCGGCCCCAAAAAGCGCCAGGGATTTGGGCAAGAAGAAGAGGGCCAGGTCGGCGAAATTGAAGCAGTGCAAGCTGGACGTTCGCCGCGAGCAATGGCTTTCTTCAGGTGCGGTGGTGAAGAAGGAGTGCAAGGAGGAACAGAACGGCGGTGTTCAAGGTCGGAGAGAGCGGGATAGCCCTAGGGAAATGGGGCCTAGAGAAGGAGAGAACGTCGGATCGATCCACCAGCCCCATCACCACCATGACAGCGATTTGGACTCGAACAGTCCGTCCAGCTTCACGAGTAGTGTGTTGGGCTGCCACGATTCGGAGACTTTCACCGGCTCCAGCAGCAGTAGCAGCAGCGGTGACTGTTGCTCCGGTAATATCACCGAGGAGGATGAGGATGATGGCTGCCTGGATGATTGGGAGGCTGTGGCGGATGCCTTGGCGGCCGATGAGATGCCGAAAAACCAGAATCCAGAGCCGCAAAGGGAGCATGAAGCGATTGCGAAATCGGTTCCTGCTCGTCAGATTGAGAATTCGAAACCTCAGTGTGGTAGAGCTATGCCGAAAGCGTGGAGGCCTGATGATGCTTTTCGTCCCCAGAGTCTGCCCAATTTGGCGAAGCAGCTCAGCTTGCCGAATTCCAGCGGGAAACGGTTCGGTGGTGGTGTTGCGTGGAGCTGTAACAGTGTGGTATCTCCGCCGTCTTCGTGTCCTATATGCTACGAGGATTTGGACTTAACAGACACCAGCTTCTTGCCGTGCTTGTGTGGATTCAGGCTCTGCCTTTTCTGTCACAAGAGGATTCTTGAGGGGGATGGTCGCTGTCCCGGCTGCAGGAAGCCCTATGAGAATGAGCCTTTTGAGGCAGAGACAAGTGTCCATGGAGGTAGTCTTACATTCAGGTTGCCTCGTTCATGTAGCATGATCACAAGGTCTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000075 GO:0000077 GO:0000278 GO:0000288 GO:0000289 GO:0000956 GO:0002682 GO:0003674 GO:0003824 GO:0004842 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006139 GO:0006401 GO:0006402 GO:0006464 GO:0006508 GO:0006511 GO:0006725 GO:0006807 GO:0006950 GO:0006974 GO:0006977 GO:0007049 GO:0007093 GO:0007154 GO:0007165 GO:0007346 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009892 GO:0009987 GO:0010468 GO:0010564 GO:0010605 GO:0010629 GO:0010948 GO:0016070 GO:0016071 GO:0016567 GO:0016740 GO:0019222 GO:0019439 GO:0019538 GO:0019787 GO:0019941 GO:0022402 GO:0023052 GO:0030163 GO:0030330 GO:0031570 GO:0031571 GO:0032446 GO:0033554 GO:0034641 GO:0034655 GO:0035556 GO:0036211 GO:0042770 GO:0043170 GO:0043412 GO:0043632 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0044270 GO:0044424 GO:0044444 GO:0044464 GO:0044773 GO:0044774 GO:0044783 GO:0044819 GO:0045595 GO:0045637 GO:0045652 GO:0045786 GO:0045787 GO:0045930 GO:0046483 GO:0046700 GO:0048518 GO:0048519 GO:0048522 GO:0048523 GO:0050789 GO:0050793 GO:0050794 GO:0050896 GO:0051239 GO:0051603 GO:0051716 GO:0051726 GO:0051865 GO:0060255 GO:0065007 GO:0070647 GO:0071156 GO:0071158 GO:0071704 GO:0072331 GO:0072395 GO:0072401 GO:0072413 GO:0072422 GO:0072431 GO:0090068 GO:0090304 GO:0140096 GO:1901360 GO:1901361 GO:1901564 GO:1901565 GO:1901575 GO:1901987 GO:1901988 GO:1901990 GO:1901991 GO:1902400 GO:1902402 GO:1902403 GO:1902806 GO:1902807 GO:1903047 GO:1903706 GO:2000026 GO:2000045 GO:2000134
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
zf-RING_4

Protein Analysis

321

Amino Acids

34.93

Weight (kDa)

6.03

Isoelectric Point (pI)

67.93

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
zf-RING_4 PF14570 245 - 291 2.9e-18 RING/Ubox like zinc-binding domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 205
AccII CGCG 1 cut(s) 123
AclWI GGATC 2 cut(s) 250, 259
AcoI YGGCCR 1 cut(s) 468
AcsI RAATTY 2 cut(s) 556, 661
AcuI CTGAAG 1 cut(s) 123
AfiI CCNNNNNNNGG 4 cut(s) 236, 343, 572, 858
AgsI TTSAA 2 cut(s) 97, 191
AjnI CCWGG 3 cut(s) 53, 80, 432
AloI GAACNNNNNNTCC 2 cut(s) 290, 322
AluBI AGCT 7 cut(s) 109, 312, 581, 649, 654, 702, 774
AluI AGCT 7 cut(s) 109, 312, 581, 649, 654, 702, 774
Alw26I GTCTC 2 cut(s) 341, 887
AlwI GGATC 2 cut(s) 250, 259
AlwNI CAGNNNCTG 2 cut(s) 628, 804
AoxI GGCC 5 cut(s) 39, 78, 227, 468, 599
ApeKI GCWGC 7 cut(s) 333, 366, 375, 378, 429, 646, 855
ApoI RAATTY 2 cut(s) 556, 661
ArsI GACNNNNNNTTYG 2 cut(s) 290, 322
Asp700I GAANNNNTTC 1 cut(s) 677
AspA2I CCTAGG 1 cut(s) 215
AspLEI GCGC 1 cut(s) 53
AspS9I GGNCC 3 cut(s) 40, 78, 227
AsuC2I CCSGG 1 cut(s) 852
AsuHPI GGTGA 6 cut(s) 10, 163, 263, 346, 395, 397
AsuII TTCGAA 1 cut(s) 560
AvrII CCTAGG 1 cut(s) 215
BauI CACGAG 1 cut(s) 316
BbsI GAAGAC 1 cut(s) 720
BbvI GCAGC 7 cut(s) 320, 378, 387, 390, 416, 658, 842
BccI CCATC 3 cut(s) 276, 419, 833
BceAI ACGGC 3 cut(s) 196, 709, 766
BciT130I CCWGG 3 cut(s) 55, 82, 434
BclI TGATCA 1 cut(s) 948
BcnI CCSGG 1 cut(s) 852
BcoDI GTCTC 2 cut(s) 341, 887
BfaI CTAG 2 cut(s) 216, 231
BfmI CTRYAG 1 cut(s) 856
BfoI RGCGCY 1 cut(s) 54
BglI GCCNNNNNGGC 2 cut(s) 86, 467
BlnI CCTAGG 1 cut(s) 215
BlpI GCTNAGC 1 cut(s) 650
Bme1390I CCNGG 4 cut(s) 55, 82, 434, 852
BmgT120I GGNCC 3 cut(s) 40, 78, 227
BmiI GGNNCC 4 cut(s) 42, 228, 361, 537
BmrFI CCNGG 4 cut(s) 55, 82, 434, 852
BmsI GCATC 3 cut(s) 448, 468, 598
BoxI GACNNNNGTC 1 cut(s) 899
BpiI GAAGAC 1 cut(s) 720
BpmI CTGGAG 1 cut(s) 346
Bpu1102I GCTNAGC 1 cut(s) 650
Bpu14I TTCGAA 1 cut(s) 560
BpuEI CTTGAG 1 cut(s) 851
BpuMI CCSGG 1 cut(s) 852
Bsa29I ATCGAT 1 cut(s) 254
BsaJI CCNNGG 5 cut(s) 54, 215, 408, 462, 904
BsaWI WCCGGW 1 cut(s) 395
BsaXI ACNNNNNCTCC 4 cut(s) 231, 261, 377, 407
Bsc4I CCNNNNNNNGG 4 cut(s) 236, 343, 572, 858
Bse118I RCCGGY 1 cut(s) 356
Bse3DI GCAATG 1 cut(s) 134
BseBI CCWGG 3 cut(s) 55, 82, 434
BseCI ATCGAT 1 cut(s) 254
BseDI CCNNGG 5 cut(s) 54, 215, 408, 462, 904
BseGI GGATG 5 cut(s) 421, 427, 442, 463, 844
BseLI CCNNNNNNNGG 4 cut(s) 236, 343, 572, 858
BseMI GCAATG 1 cut(s) 134
BseMII CTCAG 2 cut(s) 581, 664
BseRI GAGGAG 1 cut(s) 425
BseX3I CGGCCG 1 cut(s) 468
BseXI GCAGC 7 cut(s) 320, 378, 387, 390, 416, 658, 842
Bsh1236I CGCG 1 cut(s) 123
Bsh1285I CGRYCG 1 cut(s) 471
BshFI GGCC 5 cut(s) 41, 80, 229, 470, 601
BshVI ATCGAT 1 cut(s) 254
BsiEI CGRYCG 1 cut(s) 471
BsiSI CCGG 3 cut(s) 357, 396, 852
BslFI GGGAC 2 cut(s) 603, 834
BslI CCNNNNNNNGG 4 cut(s) 236, 343, 572, 858
BsmAI GTCTC 2 cut(s) 341, 887
BsmFI GGGAC 2 cut(s) 603, 834
BsnI GGCC 5 cut(s) 41, 80, 229, 470, 601
Bsp119I TTCGAA 1 cut(s) 560
Bsp143I GATC 4 cut(s) 15, 251, 255, 948
Bsp1720I GCTNAGC 1 cut(s) 650
Bsp19I CCATGG 1 cut(s) 904
BspANI GGCC 5 cut(s) 41, 80, 229, 470, 601
BspCNI CTCAG 2 cut(s) 580, 663
BspDI ATCGAT 1 cut(s) 254
BspFNI CGCG 1 cut(s) 123
BspLI GGNNCC 4 cut(s) 42, 228, 361, 537
BspMAI CTGCAG 1 cut(s) 860
BspPI GGATC 2 cut(s) 250, 259
BspT104I TTCGAA 1 cut(s) 560
BsrBI CCGCTC 1 cut(s) 205
BsrDI GCAATG 1 cut(s) 134
BsrFI RCCGGY 1 cut(s) 356
BssAI RCCGGY 1 cut(s) 356
BssECI CCNNGG 5 cut(s) 54, 215, 408, 462, 904
BssMI GATC 4 cut(s) 15, 251, 255, 948
BssSI CACGAG 1 cut(s) 316
BssT1I CCWWGG 3 cut(s) 215, 462, 904
Bst2BI CACGAG 1 cut(s) 316
Bst2UI CCWGG 3 cut(s) 55, 82, 434
Bst4CI ACNGT 4 cut(s) 302, 389, 678, 710
Bst6I CTCTTC 1 cut(s) 68
BstBI TTCGAA 1 cut(s) 560
BstC8I GCNNGC 3 cut(s) 107, 125, 656
BstDEI CTNAG 2 cut(s) 567, 650
BstDSI CCRYGG 1 cut(s) 904
BstENI CCTNNNNNAGG 1 cut(s) 234
BstF5I GGATG 5 cut(s) 421, 427, 442, 463, 844
BstFNI CGCG 1 cut(s) 123
BstH2I RGCGCY 1 cut(s) 54
BstHHI GCGC 1 cut(s) 53
BstKTI GATC 4 cut(s) 18, 254, 258, 951
BstMAI GTCTC 2 cut(s) 341, 887
BstMBI GATC 4 cut(s) 15, 251, 255, 948
BstMCI CGRYCG 1 cut(s) 471
BstMWI GCNNNNNNNGC 9 cut(s) 86, 106, 366, 372, 375, 467, 511, 655, 852
BstNI CCWGG 3 cut(s) 55, 82, 434
BstPAI GACNNNNGTC 1 cut(s) 899
BstSCI CCNGG 4 cut(s) 53, 80, 432, 850
BstSFI CTRYAG 1 cut(s) 856
BstUI CGCG 1 cut(s) 123
BstV1I GCAGC 7 cut(s) 320, 378, 387, 390, 416, 658, 842
BstV2I GAAGAC 1 cut(s) 720
BstXI CCANNNNNNTGG 1 cut(s) 61
BstZI CGGCCG 1 cut(s) 468
Bsu15I ATCGAT 1 cut(s) 254
BsuRI GGCC 5 cut(s) 41, 80, 229, 470, 601
BsuTUI ATCGAT 1 cut(s) 254
BtgI CCRYGG 1 cut(s) 904
BtsCI GGATG 5 cut(s) 421, 427, 442, 463, 844
BtsI GCAGTG 1 cut(s) 107
BtsIMutI CAGTG 3 cut(s) 107, 575, 715
Cac8I GCNNGC 3 cut(s) 107, 125, 656
CaiI CAGNNNCTG 2 cut(s) 628, 804
CfoI GCGC 1 cut(s) 53
Cfr10I RCCGGY 1 cut(s) 356
Cfr13I GGNCC 3 cut(s) 40, 78, 227
ClaI ATCGAT 1 cut(s) 254
CviAII CATG 5 cut(s) 278, 515, 905, 939, 946
DdeI CTNAG 2 cut(s) 567, 650
DpnI GATC 4 cut(s) 17, 253, 257, 950
DpnII GATC 4 cut(s) 15, 251, 255, 948
EaeI YGGCCR 1 cut(s) 468
EagI CGGCCG 1 cut(s) 468
Eam1104I CTCTTC 1 cut(s) 68
EarI CTCTTC 1 cut(s) 68
EciI GGCGGA 2 cut(s) 470, 711
EclXI CGGCCG 1 cut(s) 468
Eco130I CCWWGG 3 cut(s) 215, 462, 904
Eco147I AGGCCT 1 cut(s) 601
Eco52I CGGCCG 1 cut(s) 468
Eco57I CTGAAG 1 cut(s) 123
EcoNI CCTNNNNNAGG 1 cut(s) 234
EcoO109I RGGNCCY 1 cut(s) 227
EcoRI GAATTC 2 cut(s) 556, 661
EcoRII CCWGG 3 cut(s) 53, 80, 432
EcoT14I CCWWGG 3 cut(s) 215, 462, 904
ErhI CCWWGG 3 cut(s) 215, 462, 904
FaeI CATG 5 cut(s) 281, 518, 908, 942, 949
FaiI YATR 9 cut(s) 279, 516, 584, 740, 742, 870, 906, 940, 947
FaqI GGGAC 2 cut(s) 603, 834
FatI CATG 5 cut(s) 277, 514, 904, 938, 945
FauI CCCGC 2 cut(s) 198, 662
FbaI TGATCA 1 cut(s) 948
FokI GGATG 5 cut(s) 428, 434, 449, 470, 851
FspBI CTAG 2 cut(s) 216, 231
GlaI GCGC 1 cut(s) 52
GsuI CTGGAG 1 cut(s) 346
HaeII RGCGCY 1 cut(s) 54
HaeIII GGCC 5 cut(s) 41, 80, 229, 470, 601
HapII CCGG 3 cut(s) 357, 396, 852
HhaI GCGC 1 cut(s) 53
Hin1II CATG 5 cut(s) 281, 518, 908, 942, 949
Hin6I GCGC 1 cut(s) 51
HinP1I GCGC 1 cut(s) 51
HinfI GANTC 7 cut(s) 11, 293, 341, 493, 625, 795, 826
HpaII CCGG 3 cut(s) 357, 396, 852
HphI GGTGA 6 cut(s) 10, 163, 263, 346, 395, 397
Hpy188I TCNGA 5 cut(s) 10, 198, 251, 346, 549
Hpy188III TCNNGA 3 cut(s) 316, 497, 830
Hpy99I CGWCG 1 cut(s) 251
HpyAV CCTTC 3 cut(s) 45, 151, 230
HpyCH4III ACNGT 4 cut(s) 302, 389, 678, 710
HpyCH4IV ACGT 2 cut(s) 114, 246
HpyCH4V TGCA 3 cut(s) 105, 165, 858
HpyF10VI GCNNNNNNNGC 9 cut(s) 86, 106, 366, 372, 375, 467, 511, 655, 852
HpyF3I CTNAG 2 cut(s) 567, 650
HpySE526I ACGT 2 cut(s) 114, 246
Hsp92II CATG 5 cut(s) 281, 518, 908, 942, 949
HspAI GCGC 1 cut(s) 51
Ksp22I TGATCA 1 cut(s) 948
Kzo9I GATC 4 cut(s) 15, 251, 255, 948
LmnI GCTCC 4 cut(s) 365, 398, 511, 699
Lsp1109I GCAGC 7 cut(s) 320, 378, 387, 390, 416, 658, 842
LweI GCATC 3 cut(s) 448, 468, 598
MaeI CTAG 2 cut(s) 216, 231
MaeII ACGT 2 cut(s) 114, 246
MaeIII GTNAC 3 cut(s) 383, 704, 815
MalI GATC 4 cut(s) 17, 253, 257, 950
MbiI CCGCTC 1 cut(s) 205
MboI GATC 4 cut(s) 15, 251, 255, 948
MboII GAAGA 5 cut(s) 82, 85, 129, 166, 720
MluCI AATT 4 cut(s) 92, 556, 634, 661
MlyI GAGTC 2 cut(s) 287, 634
MmeI TCCRAC 2 cut(s) 176, 229
MroXI GAANNNNTTC 1 cut(s) 677
MseI TTAA 2 cut(s) 761, 961
MslI CAYNNNNRTG 1 cut(s) 276
MspA1I CMGCKG 2 cut(s) 381, 669
MspI CCGG 3 cut(s) 357, 396, 852
MspR9I CCNGG 4 cut(s) 55, 82, 434, 852
MvaI CCWGG 3 cut(s) 55, 82, 434
MvnI CGCG 1 cut(s) 123
MwoI GCNNNNNNNGC 9 cut(s) 86, 106, 366, 372, 375, 467, 511, 655, 852
NciI CCSGG 1 cut(s) 852
NcoI CCATGG 1 cut(s) 904
NdeII GATC 4 cut(s) 15, 251, 255, 948
NlaIII CATG 5 cut(s) 281, 518, 908, 942, 949
NlaIV GGNNCC 4 cut(s) 42, 228, 361, 537
NmuCI GTSAC 2 cut(s) 383, 815
NspV TTCGAA 1 cut(s) 560
PceI AGGCCT 1 cut(s) 601
PcsI WCGNNNNNNNCGW 2 cut(s) 120, 302
PdmI GAANNNNTTC 1 cut(s) 677
PfeI GAWTC 5 cut(s) 11, 341, 493, 795, 826
PleI GAGTC 2 cut(s) 287, 633
PpsI GAGTC 2 cut(s) 287, 633
PshAI GACNNNNGTC 1 cut(s) 899
Psp6I CCWGG 3 cut(s) 53, 80, 432
PspGI CCWGG 3 cut(s) 53, 80, 432
PspN4I GGNNCC 4 cut(s) 42, 228, 361, 537
PspPI GGNCC 3 cut(s) 40, 78, 227
PstI CTGCAG 1 cut(s) 860
PstNI CAGNNNCTG 2 cut(s) 628, 804
RseI CAYNNNNRTG 1 cut(s) 276
SaqAI TTAA 2 cut(s) 761, 961
Sau3AI GATC 4 cut(s) 15, 251, 255, 948
Sau96I GGNCC 3 cut(s) 40, 78, 227
SchI GAGTC 2 cut(s) 287, 634
ScrFI CCNGG 4 cut(s) 55, 82, 434, 852
SfaNI GCATC 3 cut(s) 448, 468, 598
SfcI CTRYAG 1 cut(s) 856
SfuI TTCGAA 1 cut(s) 560
SmiMI CAYNNNNRTG 1 cut(s) 276
SmlI CTYRAG 1 cut(s) 830
SmoI CTYRAG 1 cut(s) 830
Sse9I AATT 4 cut(s) 92, 556, 634, 661
SseBI AGGCCT 1 cut(s) 601
SspMI CTAG 2 cut(s) 216, 231
StuI AGGCCT 1 cut(s) 601
StyD4I CCNGG 4 cut(s) 53, 80, 432, 850
StyI CCWWGG 3 cut(s) 215, 462, 904
TaaI ACNGT 4 cut(s) 302, 389, 678, 710
TaiI ACGT 2 cut(s) 117, 249
TaqI TCGA 4 cut(s) 14, 254, 296, 560
TasI AATT 4 cut(s) 92, 556, 634, 661
TauI GCSGC 3 cut(s) 123, 470, 505
TfiI GAWTC 5 cut(s) 11, 341, 493, 795, 826
Tru1I TTAA 2 cut(s) 761, 961
Tru9I TTAA 2 cut(s) 761, 961
TscAI CASTG 3 cut(s) 107, 575, 715
TseFI GTSAC 2 cut(s) 383, 815
TseI GCWGC 7 cut(s) 333, 366, 375, 378, 429, 646, 855
Tsp45I GTSAC 2 cut(s) 383, 815
TspDTI ATGAA 2 cut(s) 531, 927
TspGWI ACGGA 1 cut(s) 294
TspRI CASTG 3 cut(s) 107, 575, 715
XagI CCTNNNNNAGG 1 cut(s) 234
XapI RAATTY 2 cut(s) 556, 661
XmaJI CCTAGG 1 cut(s) 215
XmnI GAANNNNTTC 1 cut(s) 677
XspI CTAG 2 cut(s) 216, 231
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.