Rh7CG029700

RING/Ubox like zinc-binding domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7C
OG0005751
Physical Location & Seq
Reverse (-)
2112538 .. 2118774
6237 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7CG029700.1

Sequence Viewer

Length: 738 bp
ATGGGGCCTAGGGAAGGAGAGAACGTCGGATCGATCCTCCACCACCACCACCATGACAGCGATTTGGACTCGAACAGTCCGTCCAGCTTCACGAGTAGTGTGTTGGGCGGCCACGATTCGGAGACTTTCACCGGCTCCAGCAGCAGTAGCAGCAGCGGTGACTGTTGCTCCGGTAATATCACCGAGGAGGATGAGGATGATGGCTGCCTGGATGATTGGGAGGCTGTGGCGGACGCCTTGGCGGCGGATGAGAAGCCGAAGAACCAGAATCCAGAGCCGCAAAGGGAGCATGAAGCGATTGCGAAATCGGTTCCTGCTAGTCAGATTGAGAATTCGAAACCTCAGTGTGCTAGAGCTATGCCGAAAGCGTGGAGGCCTGATGATGCTTTTCGTCCCCAGAGTCTGCCCAATTTGGCTAAGCAGCTCAGCTTGCCGAATTCCAGCGGGAAACGATTCGGTGGTGCTGTTGCGTGGGGCTGTAACAGTGTGGTATCTCCGCCGTCTTCGTGTCCTATATGCTACGAGGATTTGGACTTGACAGACACCAGCTTCTTGCCATGCTTGTGTGGATTCAGGCTCTGCCTTTTCTGTCACAAGAGGATTCTTGAGGGGGATGGTCGCTGTCCCGGCTGCAGGAAGCCCTATGAGAATGAGCCTGTTGAGGCAGAGACAAGTGTCCATGGAGGTAGTCTTACATTCAGGTTGCCTCGATCATGTAGCATGATCACAAGGTCTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000075 GO:0000077 GO:0000278 GO:0000288 GO:0000289 GO:0000956 GO:0002682 GO:0003674 GO:0003824 GO:0004842 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006139 GO:0006401 GO:0006402 GO:0006464 GO:0006508 GO:0006511 GO:0006725 GO:0006807 GO:0006950 GO:0006974 GO:0006977 GO:0007049 GO:0007093 GO:0007154 GO:0007165 GO:0007346 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009892 GO:0009987 GO:0010468 GO:0010564 GO:0010605 GO:0010629 GO:0010948 GO:0016070 GO:0016071 GO:0016567 GO:0016740 GO:0019222 GO:0019439 GO:0019538 GO:0019787 GO:0019941 GO:0022402 GO:0023052 GO:0030163 GO:0030330 GO:0031570 GO:0031571 GO:0032446 GO:0033554 GO:0034641 GO:0034655 GO:0035556 GO:0036211 GO:0042770 GO:0043170 GO:0043412 GO:0043632 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0044270 GO:0044424 GO:0044444 GO:0044464 GO:0044773 GO:0044774 GO:0044783 GO:0044819 GO:0045595 GO:0045637 GO:0045652 GO:0045786 GO:0045787 GO:0045930 GO:0046483 GO:0046700 GO:0048518 GO:0048519 GO:0048522 GO:0048523 GO:0050789 GO:0050793 GO:0050794 GO:0050896 GO:0051239 GO:0051603 GO:0051716 GO:0051726 GO:0051865 GO:0060255 GO:0065007 GO:0070647 GO:0071156 GO:0071158 GO:0071704 GO:0072331 GO:0072395 GO:0072401 GO:0072413 GO:0072422 GO:0072431 GO:0090068 GO:0090304 GO:0140096 GO:1901360 GO:1901361 GO:1901564 GO:1901565 GO:1901575 GO:1901987 GO:1901988 GO:1901990 GO:1901991 GO:1902400 GO:1902402 GO:1902403 GO:1902806 GO:1902807 GO:1903047 GO:1903706 GO:2000026 GO:2000045 GO:2000134
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
zf-RING_4

Protein Analysis

245

Amino Acids

26.4

Weight (kDa)

5.0

Isoelectric Point (pI)

63.25

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
zf-RING_4 PF14570 170 - 216 1.9e-18 RING/Ubox like zinc-binding domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 8 cut(s) 108, 156, 230, 242, 245, 278, 444, 497
AclWI GGATC 2 cut(s) 28, 37
AcoI YGGCCR 1 cut(s) 109
AcsI RAATTY 2 cut(s) 331, 436
AcyI GRCGYC 1 cut(s) 234
AfiI CCNNNNNNNGG 3 cut(s) 14, 118, 633
AjnI CCWGG 1 cut(s) 207
AloI GAACNNNNNNTCC 2 cut(s) 65, 97
AluBI AGCT 5 cut(s) 87, 356, 424, 429, 549
AluI AGCT 5 cut(s) 87, 356, 424, 429, 549
Alw26I GTCTC 2 cut(s) 116, 662
AlwI GGATC 2 cut(s) 28, 37
AlwNI CAGNNNCTG 2 cut(s) 403, 579
AoxI GGCC 3 cut(s) 5, 109, 374
ApeKI GCWGC 6 cut(s) 141, 150, 153, 204, 421, 630
ApoI RAATTY 2 cut(s) 331, 436
ArsI GACNNNNNNTTYG 2 cut(s) 65, 97
Asp700I GAANNNNTTC 1 cut(s) 452
AspA2I CCTAGG 1 cut(s) 8
AspS9I GGNCC 1 cut(s) 5
AsuC2I CCSGG 1 cut(s) 627
AsuHPI GGTGA 3 cut(s) 121, 170, 172
AsuII TTCGAA 1 cut(s) 335
AvrII CCTAGG 1 cut(s) 8
BauI CACGAG 1 cut(s) 91
BbsI GAAGAC 1 cut(s) 495
BbvI GCAGC 6 cut(s) 153, 162, 165, 191, 433, 617
BccI CCATC 2 cut(s) 194, 608
BceAI ACGGC 1 cut(s) 484
BciT130I CCWGG 1 cut(s) 209
BclI TGATCA 1 cut(s) 723
BcnI CCSGG 1 cut(s) 627
BcoDI GTCTC 2 cut(s) 116, 662
BfaI CTAG 3 cut(s) 9, 318, 351
BfmI CTRYAG 1 cut(s) 631
BglI GCCNNNNNGGC 1 cut(s) 242
BisI GCNGC 9 cut(s) 109, 142, 151, 154, 205, 243, 278, 422, 631
BlnI CCTAGG 1 cut(s) 8
BlpI GCTNAGC 2 cut(s) 417, 425
BlsI GCNGC 9 cut(s) 110, 143, 152, 155, 206, 244, 279, 423, 632
Bme1390I CCNGG 2 cut(s) 209, 627
BmgT120I GGNCC 1 cut(s) 5
BmiI GGNNCC 3 cut(s) 6, 136, 312
BmrFI CCNGG 2 cut(s) 209, 627
BmsI GCATC 1 cut(s) 373
BoxI GACNNNNGTC 1 cut(s) 674
BpiI GAAGAC 1 cut(s) 495
BpmI CTGGAG 1 cut(s) 121
Bpu1102I GCTNAGC 2 cut(s) 417, 425
Bpu14I TTCGAA 1 cut(s) 335
BpuEI CTTGAG 1 cut(s) 626
BpuMI CCSGG 1 cut(s) 627
Bsa29I ATCGAT 1 cut(s) 32
BsaHI GRCGYC 1 cut(s) 234
BsaJI CCNNGG 4 cut(s) 8, 183, 237, 679
BsaWI WCCGGW 1 cut(s) 170
BsaXI ACNNNNNCTCC 4 cut(s) 9, 39, 152, 182
Bsc4I CCNNNNNNNGG 3 cut(s) 14, 118, 633
Bse118I RCCGGY 1 cut(s) 131
BseBI CCWGG 1 cut(s) 209
BseCI ATCGAT 1 cut(s) 32
BseDI CCNNGG 4 cut(s) 8, 183, 237, 679
BseGI GGATG 5 cut(s) 196, 202, 217, 253, 619
BseLI CCNNNNNNNGG 3 cut(s) 14, 118, 633
BseMII CTCAG 2 cut(s) 356, 439
BseRI GAGGAG 1 cut(s) 200
BseXI GCAGC 6 cut(s) 153, 162, 165, 191, 433, 617
BshFI GGCC 3 cut(s) 7, 111, 376
BshVI ATCGAT 1 cut(s) 32
BsiSI CCGG 3 cut(s) 132, 171, 627
BslFI GGGAC 2 cut(s) 378, 609
BslI CCNNNNNNNGG 3 cut(s) 14, 118, 633
BsmAI GTCTC 2 cut(s) 116, 662
BsmFI GGGAC 2 cut(s) 378, 609
BsnI GGCC 3 cut(s) 7, 111, 376
Bsp119I TTCGAA 1 cut(s) 335
Bsp143I GATC 4 cut(s) 29, 33, 710, 723
Bsp1720I GCTNAGC 2 cut(s) 417, 425
Bsp19I CCATGG 1 cut(s) 679
BspACI CCGC 8 cut(s) 108, 156, 230, 242, 245, 278, 444, 497
BspANI GGCC 3 cut(s) 7, 111, 376
BspCNI CTCAG 2 cut(s) 355, 438
BspDI ATCGAT 1 cut(s) 32
BspLI GGNNCC 3 cut(s) 6, 136, 312
BspMAI CTGCAG 1 cut(s) 635
BspPI GGATC 2 cut(s) 28, 37
BspT104I TTCGAA 1 cut(s) 335
BsrFI RCCGGY 1 cut(s) 131
BssAI RCCGGY 1 cut(s) 131
BssECI CCNNGG 4 cut(s) 8, 183, 237, 679
BssMI GATC 4 cut(s) 29, 33, 710, 723
BssNI GRCGYC 1 cut(s) 234
BssSI CACGAG 1 cut(s) 91
BssT1I CCWWGG 3 cut(s) 8, 237, 679
Bst2BI CACGAG 1 cut(s) 91
Bst2UI CCWGG 1 cut(s) 209
Bst4CI ACNGT 3 cut(s) 77, 164, 485
BstACI GRCGYC 1 cut(s) 234
BstBI TTCGAA 1 cut(s) 335
BstC8I GCNNGC 1 cut(s) 431
BstDEI CTNAG 3 cut(s) 342, 417, 425
BstDSI CCRYGG 1 cut(s) 679
BstENI CCTNNNNNAGG 1 cut(s) 12
BstF5I GGATG 5 cut(s) 196, 202, 217, 253, 619
BstKTI GATC 4 cut(s) 32, 36, 713, 726
BstMAI GTCTC 2 cut(s) 116, 662
BstMBI GATC 4 cut(s) 29, 33, 710, 723
BstMWI GCNNNNNNNGC 7 cut(s) 141, 147, 150, 242, 286, 430, 627
BstNI CCWGG 1 cut(s) 209
BstPAI GACNNNNGTC 1 cut(s) 674
BstSCI CCNGG 2 cut(s) 207, 625
BstSFI CTRYAG 1 cut(s) 631
BstV1I GCAGC 6 cut(s) 153, 162, 165, 191, 433, 617
BstV2I GAAGAC 1 cut(s) 495
Bsu15I ATCGAT 1 cut(s) 32
BsuRI GGCC 3 cut(s) 7, 111, 376
BsuTUI ATCGAT 1 cut(s) 32
BtgI CCRYGG 1 cut(s) 679
BtsCI GGATG 5 cut(s) 196, 202, 217, 253, 619
BtsIMutI CAGTG 2 cut(s) 350, 490
Cac8I GCNNGC 1 cut(s) 431
CaiI CAGNNNCTG 2 cut(s) 403, 579
Cfr10I RCCGGY 1 cut(s) 131
Cfr13I GGNCC 1 cut(s) 5
ClaI ATCGAT 1 cut(s) 32
CseI GACGC 1 cut(s) 242
CviAII CATG 6 cut(s) 53, 290, 558, 680, 714, 721
DdeI CTNAG 3 cut(s) 342, 417, 425
DpnI GATC 4 cut(s) 31, 35, 712, 725
DpnII GATC 4 cut(s) 29, 33, 710, 723
EaeI YGGCCR 1 cut(s) 109
EciI GGCGGA 3 cut(s) 245, 260, 486
Eco130I CCWWGG 3 cut(s) 8, 237, 679
Eco147I AGGCCT 1 cut(s) 376
EcoNI CCTNNNNNAGG 1 cut(s) 12
EcoO109I RGGNCCY 1 cut(s) 5
EcoRI GAATTC 2 cut(s) 331, 436
EcoRII CCWGG 1 cut(s) 207
EcoT14I CCWWGG 3 cut(s) 8, 237, 679
ErhI CCWWGG 3 cut(s) 8, 237, 679
FaeI CATG 6 cut(s) 56, 293, 561, 683, 717, 724
FaqI GGGAC 2 cut(s) 378, 609
FatI CATG 6 cut(s) 52, 289, 557, 679, 713, 720
FauI CCCGC 1 cut(s) 437
FbaI TGATCA 1 cut(s) 723
Fnu4HI GCNGC 9 cut(s) 109, 142, 151, 154, 205, 243, 278, 422, 631
FokI GGATG 5 cut(s) 203, 209, 224, 260, 626
Fsp4HI GCNGC 9 cut(s) 109, 142, 151, 154, 205, 243, 278, 422, 631
FspBI CTAG 3 cut(s) 9, 318, 351
GluI GCNGC 9 cut(s) 109, 142, 151, 154, 205, 243, 278, 422, 631
GsuI CTGGAG 1 cut(s) 121
HaeIII GGCC 3 cut(s) 7, 111, 376
HapII CCGG 3 cut(s) 132, 171, 627
HgaI GACGC 1 cut(s) 242
Hin1I GRCGYC 1 cut(s) 234
Hin1II CATG 6 cut(s) 56, 293, 561, 683, 717, 724
HinfI GANTC 7 cut(s) 68, 116, 268, 400, 453, 570, 601
HpaII CCGG 3 cut(s) 132, 171, 627
HphI GGTGA 3 cut(s) 121, 170, 172
Hpy188I TCNGA 3 cut(s) 29, 121, 324
Hpy188III TCNNGA 3 cut(s) 91, 272, 605
Hpy99I CGWCG 1 cut(s) 29
HpyAV CCTTC 1 cut(s) 8
HpyCH4III ACNGT 3 cut(s) 77, 164, 485
HpyCH4IV ACGT 1 cut(s) 24
HpyCH4V TGCA 1 cut(s) 633
HpyF10VI GCNNNNNNNGC 7 cut(s) 141, 147, 150, 242, 286, 430, 627
HpyF3I CTNAG 3 cut(s) 342, 417, 425
HpySE526I ACGT 1 cut(s) 24
Hsp92I GRCGYC 1 cut(s) 234
Hsp92II CATG 6 cut(s) 56, 293, 561, 683, 717, 724
Ksp22I TGATCA 1 cut(s) 723
Kzo9I GATC 4 cut(s) 29, 33, 710, 723
LmnI GCTCC 3 cut(s) 140, 173, 286
Lsp1109I GCAGC 6 cut(s) 153, 162, 165, 191, 433, 617
LweI GCATC 1 cut(s) 373
MaeI CTAG 3 cut(s) 9, 318, 351
MaeII ACGT 1 cut(s) 24
MaeIII GTNAC 3 cut(s) 158, 479, 590
MalI GATC 4 cut(s) 31, 35, 712, 725
MboI GATC 4 cut(s) 29, 33, 710, 723
MboII GAAGA 2 cut(s) 271, 495
MluCI AATT 3 cut(s) 331, 409, 436
MlyI GAGTC 2 cut(s) 62, 409
MmeI TCCRAC 1 cut(s) 7
MroXI GAANNNNTTC 1 cut(s) 452
MseI TTAA 1 cut(s) 736
MslI CAYNNNNRTG 2 cut(s) 51, 562
MspA1I CMGCKG 2 cut(s) 156, 444
MspI CCGG 3 cut(s) 132, 171, 627
MspR9I CCNGG 2 cut(s) 209, 627
MvaI CCWGG 1 cut(s) 209
MwoI GCNNNNNNNGC 7 cut(s) 141, 147, 150, 242, 286, 430, 627
NciI CCSGG 1 cut(s) 627
NcoI CCATGG 1 cut(s) 679
NdeII GATC 4 cut(s) 29, 33, 710, 723
NlaIII CATG 6 cut(s) 56, 293, 561, 683, 717, 724
NlaIV GGNNCC 3 cut(s) 6, 136, 312
NmuCI GTSAC 2 cut(s) 158, 590
NspV TTCGAA 1 cut(s) 335
PceI AGGCCT 1 cut(s) 376
PcsI WCGNNNNNNNCGW 1 cut(s) 77
PdmI GAANNNNTTC 1 cut(s) 452
PfeI GAWTC 5 cut(s) 116, 268, 453, 570, 601
PkrI GCNGC 9 cut(s) 110, 143, 152, 155, 206, 244, 279, 423, 632
PleI GAGTC 2 cut(s) 62, 408
PpsI GAGTC 2 cut(s) 62, 408
PshAI GACNNNNGTC 1 cut(s) 674
Psp6I CCWGG 1 cut(s) 207
PspGI CCWGG 1 cut(s) 207
PspN4I GGNNCC 3 cut(s) 6, 136, 312
PspPI GGNCC 1 cut(s) 5
PstI CTGCAG 1 cut(s) 635
PstNI CAGNNNCTG 2 cut(s) 403, 579
RseI CAYNNNNRTG 2 cut(s) 51, 562
SaqAI TTAA 1 cut(s) 736
SatI GCNGC 9 cut(s) 109, 142, 151, 154, 205, 243, 278, 422, 631
Sau3AI GATC 4 cut(s) 29, 33, 710, 723
Sau96I GGNCC 1 cut(s) 5
SchI GAGTC 2 cut(s) 62, 409
ScrFI CCNGG 2 cut(s) 209, 627
SfaNI GCATC 1 cut(s) 373
SfcI CTRYAG 1 cut(s) 631
SfuI TTCGAA 1 cut(s) 335
SmiMI CAYNNNNRTG 2 cut(s) 51, 562
SmlI CTYRAG 1 cut(s) 605
SmoI CTYRAG 1 cut(s) 605
Sse9I AATT 3 cut(s) 331, 409, 436
SseBI AGGCCT 1 cut(s) 376
SsiI CCGC 8 cut(s) 108, 156, 230, 242, 245, 278, 444, 497
SspMI CTAG 3 cut(s) 9, 318, 351
StuI AGGCCT 1 cut(s) 376
StyD4I CCNGG 2 cut(s) 207, 625
StyI CCWWGG 3 cut(s) 8, 237, 679
TaaI ACNGT 3 cut(s) 77, 164, 485
TaiI ACGT 1 cut(s) 27
TaqI TCGA 4 cut(s) 32, 71, 335, 709
TasI AATT 3 cut(s) 331, 409, 436
TauI GCSGC 3 cut(s) 111, 245, 280
TfiI GAWTC 5 cut(s) 116, 268, 453, 570, 601
Tru1I TTAA 1 cut(s) 736
Tru9I TTAA 1 cut(s) 736
TscAI CASTG 2 cut(s) 350, 490
TseFI GTSAC 2 cut(s) 158, 590
TseI GCWGC 6 cut(s) 141, 150, 153, 204, 421, 630
Tsp45I GTSAC 2 cut(s) 158, 590
TspDTI ATGAA 1 cut(s) 306
TspGWI ACGGA 1 cut(s) 69
TspRI CASTG 2 cut(s) 350, 490
XagI CCTNNNNNAGG 1 cut(s) 12
XapI RAATTY 2 cut(s) 331, 436
XmaJI CCTAGG 1 cut(s) 8
XmnI GAANNNNTTC 1 cut(s) 452
XspI CTAG 3 cut(s) 9, 318, 351
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.