AT5G62910

RING/Ubox like zinc-binding domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
5
OG0005751
Physical Location & Seq
Forward (+)
25250256 .. 25252354
2099 bp
Loading structure...
UTR
Exon/CDS
Intron
AT5G62910.1

Sequence Viewer

Length: 984 bp
ATGATTACAGATTCGATCACCAACGCTTCTGCTACTTCAGCTCCGAGAGATTCCGGAAAGAAGAAGAGGAACAATAAGTCGGCTAAGATGAAGCAGAACAAGCTTGGTCTCCGTCGTGAGCAATGGCTTTCTCAAGTTGCGGTGAGCAATAAGGAAGTTAAAGAGGAGAGGAGTGTTAATCGTAGTCAAAAGCCTCATCATGAGAGTTCAGATAAGGTGCGTAGAGAAGAGGATAACAATGGTGGGAATAATCTTCTTCATCATGAGAGTTTTATGGAGTCACCTTCAAATAGCTCTGTTGGTGGTACATATTCGAGCACTAACTTCAGTGGGAGAAGTAGCAGGAGTAGTAGTAGCAGCAGTGGCTTTTGCTCTGGTAATATAACAGAAGAGGAAAATGTAGACGATGATGATGATGGGTGTGTGGATGATTGGGAAGCTGTTGCTGATGCGTTAGCGGCTGAGGAAGAGATTGAGAAAAAGAGTCGTCCTCTTGAGTCTGTGAAAGAGCAAGTGAGTGTTGGACAATCAGCTTCTAATGTGTGTGATTCGTCGATTAGTGATGCATCAGATGTTGTGGGTGTTGAAGATCCAAAGCAGGAATGCTTGAGAGTGTCATCAAGGAAGCAGACTAGTAATAGAGCTTGGAGGCTAGATGATGACCTTCGCCCACAGGGGTTACCTAATTTGGCGAAGCAGCTTAGTTTTCCGGAGTTAGACAAGCGTTTTAGCTCTGTGGCGATTCCGTCTTCATGTCCCATATGCTACGAAGACTTGGACTTGACGGATTCGAATTTCCTCCCCTGTCCTTGTGGATTTCGGCTCTGTCTGTTCTGCCACAAGACCATTTGCGATGGAGATGGGCGTTGTCCAGGCTGCAGGAAACCCTATGAACGGAATATGGTCAAGGCTGAGACTAGTATTCAAGGTGGTGGTCTAACAATTCGGTTGGCTCGTTCGTCTAGCATGTTTTGCAAGTTTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000075 GO:0000077 GO:0000278 GO:0000288 GO:0000289 GO:0000956 GO:0002682 GO:0003674 GO:0003824 GO:0004842 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006139 GO:0006401 GO:0006402 GO:0006464 GO:0006508 GO:0006511 GO:0006725 GO:0006807 GO:0006950 GO:0006974 GO:0006977 GO:0007049 GO:0007093 GO:0007154 GO:0007165 GO:0007346 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009892 GO:0009987 GO:0010468 GO:0010564 GO:0010605 GO:0010629 GO:0010948 GO:0016070 GO:0016071 GO:0016567 GO:0016740 GO:0019222 GO:0019439 GO:0019538 GO:0019787 GO:0019941 GO:0022402 GO:0023052 GO:0030163 GO:0030330 GO:0031570 GO:0031571 GO:0032446 GO:0033554 GO:0034641 GO:0034655 GO:0035556 GO:0036211 GO:0042770 GO:0043170 GO:0043412 GO:0043632 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0044270 GO:0044424 GO:0044444 GO:0044464 GO:0044773 GO:0044774 GO:0044783 GO:0044819 GO:0045595 GO:0045637 GO:0045652 GO:0045786 GO:0045787 GO:0045930 GO:0046483 GO:0046700 GO:0048518 GO:0048519 GO:0048522 GO:0048523 GO:0050789 GO:0050793 GO:0050794 GO:0050896 GO:0051239 GO:0051603 GO:0051716 GO:0051726 GO:0051865 GO:0060255 GO:0065007 GO:0070647 GO:0071156 GO:0071158 GO:0071704 GO:0072331 GO:0072395 GO:0072401 GO:0072413 GO:0072422 GO:0072431 GO:0090068 GO:0090304 GO:0140096 GO:1901360 GO:1901361 GO:1901564 GO:1901565 GO:1901575 GO:1901987 GO:1901988 GO:1901990 GO:1901991 GO:1902400 GO:1902402 GO:1902403 GO:1902806 GO:1902807 GO:1903047 GO:1903706 GO:2000026 GO:2000045 GO:2000134
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
zf-RING_4

Protein Analysis

327

Amino Acids

35.98

Weight (kDa)

5.72

Isoelectric Point (pI)

70.24

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
zf-RING_4 PF14570 252 - 298 3.3e-17 RING/Ubox like zinc-binding domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 402
AccIII TCCGGA 2 cut(s) 53, 709
AciI CCGC 2 cut(s) 140, 458
AclWI GGATC 1 cut(s) 584
AcsI RAATTY 1 cut(s) 793
AcuI CTGAAG 2 cut(s) 21, 310
AfaI GTAC 1 cut(s) 307
AfiI CCNNNNNNNGG 1 cut(s) 894
AgsI TTSAA 3 cut(s) 288, 587, 926
AhlI ACTAGT 2 cut(s) 632, 917
AjnI CCWGG 1 cut(s) 871
AluBI AGCT 8 cut(s) 41, 103, 294, 440, 533, 644, 700, 732
AluI AGCT 8 cut(s) 41, 103, 294, 440, 533, 644, 700, 732
Alw21I GWGCWC 1 cut(s) 320
Alw26I GTCTC 2 cut(s) 113, 908
AlwI GGATC 1 cut(s) 584
Aor13HI TCCGGA 2 cut(s) 53, 709
ApeKI GCWGC 3 cut(s) 357, 697, 876
ApoI RAATTY 1 cut(s) 793
AsuHPI GGTGA 3 cut(s) 10, 154, 273
AsuII TTCGAA 1 cut(s) 791
BbsI GAAGAC 2 cut(s) 741, 777
Bbv12I GWGCWC 1 cut(s) 320
BbvCI CCTCAGC 1 cut(s) 462
BbvI GCAGC 3 cut(s) 369, 709, 863
BccI CCATC 3 cut(s) 410, 848, 854
BciT130I CCWGG 1 cut(s) 873
BcoDI GTCTC 2 cut(s) 113, 908
BcuI ACTAGT 2 cut(s) 632, 917
BfaI CTAG 4 cut(s) 633, 653, 918, 963
BfmI CTRYAG 1 cut(s) 877
BisI GCNGC 4 cut(s) 358, 459, 698, 877
BlsI GCNGC 4 cut(s) 359, 460, 699, 878
Bme1390I CCNGG 1 cut(s) 873
BmrFI CCNGG 1 cut(s) 873
BmsI GCATC 3 cut(s) 439, 553, 575
BpiI GAAGAC 2 cut(s) 741, 777
BplI GAGNNNNNCTC 2 cut(s) 475, 507
Bpu10I CCTNAGC 1 cut(s) 462
Bpu14I TTCGAA 1 cut(s) 791
BpuEI CTTGAG 3 cut(s) 117, 515, 628
BsaI GGTCTC 1 cut(s) 113
BsaWI WCCGGW 2 cut(s) 53, 709
BsaXI ACNNNNNCTCC 4 cut(s) 25, 55, 337, 367
Bsc4I CCNNNNNNNGG 1 cut(s) 894
Bse3DI GCAATG 1 cut(s) 128
BseAI TCCGGA 2 cut(s) 53, 709
BseBI CCWGG 1 cut(s) 873
BseGI GGATG 1 cut(s) 433
BseLI CCNNNNNNNGG 1 cut(s) 894
BseMI GCAATG 1 cut(s) 128
BseMII CTCAG 2 cut(s) 453, 903
BseRI GAGGAG 2 cut(s) 179, 184
BseXI GCAGC 3 cut(s) 369, 709, 863
BsiHKAI GWGCWC 1 cut(s) 320
BsiSI CCGG 2 cut(s) 54, 710
BslFI GGGAC 1 cut(s) 741
BslI CCNNNNNNNGG 1 cut(s) 894
BsmAI GTCTC 2 cut(s) 113, 908
BsmFI GGGAC 1 cut(s) 741
BsmI GAATGC 1 cut(s) 608
Bso31I GGTCTC 1 cut(s) 113
Bsp119I TTCGAA 1 cut(s) 791
Bsp1286I GDGCHC 1 cut(s) 320
Bsp13I TCCGGA 2 cut(s) 53, 709
Bsp143I GATC 2 cut(s) 15, 589
BspACI CCGC 2 cut(s) 140, 458
BspCNI CTCAG 2 cut(s) 454, 904
BspEI TCCGGA 2 cut(s) 53, 709
BspHI TCATGA 2 cut(s) 199, 262
BspMAI CTGCAG 1 cut(s) 881
BspPI GGATC 1 cut(s) 584
BspT104I TTCGAA 1 cut(s) 791
BspTNI GGTCTC 1 cut(s) 113
BsrDI GCAATG 1 cut(s) 128
BssMI GATC 2 cut(s) 15, 589
Bst2UI CCWGG 1 cut(s) 873
Bst6I CTCTTC 4 cut(s) 59, 222, 384, 462
BstAPI GCANNNNNTGC 1 cut(s) 972
BstBI TTCGAA 1 cut(s) 791
BstDEI CTNAG 4 cut(s) 84, 462, 701, 912
BstEII GGTNACC 1 cut(s) 678
BstF5I GGATG 1 cut(s) 433
BstKTI GATC 2 cut(s) 18, 592
BstMAI GTCTC 2 cut(s) 113, 908
BstMBI GATC 2 cut(s) 15, 589
BstMWI GCNNNNNNNGC 5 cut(s) 38, 100, 363, 458, 972
BstNI CCWGG 1 cut(s) 873
BstNSI RCATGY 1 cut(s) 970
BstPI GGTNACC 1 cut(s) 678
BstSCI CCNGG 1 cut(s) 871
BstSFI CTRYAG 1 cut(s) 877
BstV1I GCAGC 3 cut(s) 369, 709, 863
BstV2I GAAGAC 2 cut(s) 741, 777
BstX2I RGATCY 1 cut(s) 589
BstYI RGATCY 1 cut(s) 589
BtgZI GCGATG 1 cut(s) 867
BtsCI GGATG 1 cut(s) 433
BtsI GCAGTG 1 cut(s) 367
BtsIMutI CAGTG 2 cut(s) 334, 367
CciI TCATGA 2 cut(s) 199, 262
Csp6I GTAC 1 cut(s) 306
CviAII CATG 4 cut(s) 200, 263, 753, 967
CviQI GTAC 1 cut(s) 306
DdeI CTNAG 4 cut(s) 84, 462, 701, 912
DpnI GATC 2 cut(s) 17, 591
DpnII GATC 2 cut(s) 15, 589
Eam1104I CTCTTC 4 cut(s) 59, 222, 384, 462
EarI CTCTTC 4 cut(s) 59, 222, 384, 462
Eco31I GGTCTC 1 cut(s) 113
Eco57I CTGAAG 2 cut(s) 21, 310
Eco91I GGTNACC 1 cut(s) 678
EcoO65I GGTNACC 1 cut(s) 678
EcoRII CCWGG 1 cut(s) 871
EcoT22I ATGCAT 1 cut(s) 568
FaeI CATG 4 cut(s) 203, 266, 756, 970
FaqI GGGAC 1 cut(s) 741
FatI CATG 4 cut(s) 199, 262, 752, 966
FauNDI CATATG 1 cut(s) 761
FblI GTMKAC 1 cut(s) 402
Fnu4HI GCNGC 4 cut(s) 358, 459, 698, 877
FokI GGATG 1 cut(s) 440
Fsp4HI GCNGC 4 cut(s) 358, 459, 698, 877
FspBI CTAG 4 cut(s) 633, 653, 918, 963
GluI GCNGC 4 cut(s) 358, 459, 698, 877
HapII CCGG 2 cut(s) 54, 710
Hin1II CATG 4 cut(s) 203, 266, 756, 970
HindIII AAGCTT 1 cut(s) 101
HinfI GANTC 8 cut(s) 11, 50, 278, 484, 497, 548, 742, 788
HpaII CCGG 2 cut(s) 54, 710
HphI GGTGA 3 cut(s) 10, 154, 273
Hpy166II GTNNAC 1 cut(s) 403
Hpy188I TCNGA 3 cut(s) 45, 211, 571
Hpy188III TCNNGA 6 cut(s) 54, 116, 200, 263, 494, 710
Hpy8I GTNNAC 1 cut(s) 403
Hpy99I CGWCG 2 cut(s) 117, 556
HpyAV CCTTC 2 cut(s) 294, 674
HpyCH4V TGCA 3 cut(s) 566, 879, 975
HpyF10VI GCNNNNNNNGC 5 cut(s) 38, 100, 363, 458, 972
HpyF3I CTNAG 4 cut(s) 84, 462, 701, 912
Hsp92II CATG 4 cut(s) 203, 266, 756, 970
Kpn2I TCCGGA 2 cut(s) 53, 709
Kzo9I GATC 2 cut(s) 15, 589
LmnI GCTCC 1 cut(s) 46
Lsp1109I GCAGC 3 cut(s) 369, 709, 863
LweI GCATC 3 cut(s) 439, 553, 575
MaeI CTAG 4 cut(s) 633, 653, 918, 963
MaeIII GTNAC 2 cut(s) 279, 678
MalI GATC 2 cut(s) 17, 591
MboI GATC 2 cut(s) 15, 589
MflI RGATCY 1 cut(s) 589
MhlI GDGCHC 1 cut(s) 320
MluCI AATT 3 cut(s) 685, 793, 942
MlyI GAGTC 3 cut(s) 287, 493, 506
MmeI TCCRAC 1 cut(s) 502
Mph1103I ATGCAT 1 cut(s) 568
MroI TCCGGA 2 cut(s) 53, 709
MseI TTAA 3 cut(s) 159, 177, 982
MspI CCGG 2 cut(s) 54, 710
MspR9I CCNGG 1 cut(s) 873
Mva1269I GAATGC 1 cut(s) 608
MvaI CCWGG 1 cut(s) 873
MwoI GCNNNNNNNGC 5 cut(s) 38, 100, 363, 458, 972
NdeI CATATG 1 cut(s) 761
NdeII GATC 2 cut(s) 15, 589
NlaIII CATG 4 cut(s) 203, 266, 756, 970
NmuCI GTSAC 1 cut(s) 279
NsiI ATGCAT 1 cut(s) 568
NspI RCATGY 1 cut(s) 970
NspV TTCGAA 1 cut(s) 791
PagI TCATGA 2 cut(s) 199, 262
PcsI WCGNNNNNNNCGW 1 cut(s) 952
PctI GAATGC 1 cut(s) 608
PfeI GAWTC 5 cut(s) 11, 50, 548, 742, 788
PkrI GCNGC 4 cut(s) 359, 460, 699, 878
PleI GAGTC 3 cut(s) 286, 492, 505
PpsI GAGTC 3 cut(s) 286, 492, 505
Psp6I CCWGG 1 cut(s) 871
PspEI GGTNACC 1 cut(s) 678
PspGI CCWGG 1 cut(s) 871
PstI CTGCAG 1 cut(s) 881
PsuI RGATCY 1 cut(s) 589
RsaI GTAC 1 cut(s) 307
RsaNI GTAC 1 cut(s) 306
SaqAI TTAA 3 cut(s) 159, 177, 982
SatI GCNGC 4 cut(s) 358, 459, 698, 877
Sau3AI GATC 2 cut(s) 15, 589
SchI GAGTC 3 cut(s) 287, 493, 506
ScrFI CCNGG 1 cut(s) 873
SduI GDGCHC 1 cut(s) 320
SfaNI GCATC 3 cut(s) 439, 553, 575
SfcI CTRYAG 1 cut(s) 877
SfuI TTCGAA 1 cut(s) 791
SmlI CTYRAG 3 cut(s) 132, 494, 607
SmoI CTYRAG 3 cut(s) 132, 494, 607
SpeI ACTAGT 2 cut(s) 632, 917
Sse9I AATT 3 cut(s) 685, 793, 942
SsiI CCGC 2 cut(s) 140, 458
SspMI CTAG 4 cut(s) 633, 653, 918, 963
StyD4I CCNGG 1 cut(s) 871
TaqI TCGA 4 cut(s) 14, 314, 554, 791
TasI AATT 3 cut(s) 685, 793, 942
TauI GCSGC 1 cut(s) 461
TfiI GAWTC 5 cut(s) 11, 50, 548, 742, 788
Tru1I TTAA 3 cut(s) 159, 177, 982
Tru9I TTAA 3 cut(s) 159, 177, 982
TscAI CASTG 2 cut(s) 334, 367
TseFI GTSAC 1 cut(s) 279
TseI GCWGC 3 cut(s) 357, 697, 876
Tsp45I GTSAC 1 cut(s) 279
TspDTI ATGAA 4 cut(s) 104, 248, 741, 906
TspGWI ACGGA 4 cut(s) 101, 735, 800, 910
TspRI CASTG 2 cut(s) 334, 367
XapI RAATTY 1 cut(s) 793
XceI RCATGY 1 cut(s) 970
XmiI GTMKAC 1 cut(s) 402
XspI CTAG 4 cut(s) 633, 653, 918, 963
Zsp2I ATGCAT 1 cut(s) 568
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.