Rroxscaffold_3G00273370

RING/Ubox like zinc-binding domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000003
OG0005751
Physical Location & Seq
Forward (+)
65153967 .. 65155399
1433 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_3G00273370.1

Sequence Viewer

Length: 963 bp
ATGGTTTCCGACTCGATCACCAACGTTTCCATTCCCTCGGCCCCAAAAAGCGCCAGGGATTTGGGCAAGAAGAAGAGGGCCAGGTCGGCGAAATTGAAGCAGTGCAAGCTGGACGTTCGCCGCGAGCAATGGCTTTCTTCAGGTGCGGTGGTGAAGAAGGAGTGCAGGGAGGAACAGAACGGCGGTGTTCAAGGTCGCAGAGAGCGGAATAGCCCTAGGGAAATGGGGCCAAGAGAAGGAGAGAACGTCGGATCGATCCACCAGCACCAGCACCAACACCAACACCACCACCATGACAGCGATTTGGACTCGAACAGTCCGTCCAGCTTCACGAGTAGTGTGTTGGGCGGCCACGATTCGGAGACTTTCACCGGCTCCAGCAGCAGTAGCAGCAGCGGTGACTGTTGCTCCGGTAATATCACCGAGGAGGATGAGGATGATGGCTGCCTGGATGATTGGGAGGCTGTGGCGGACGCCTTGGCGGCGGATGAGAAGTCGAAAAACCAGAATCCAGAGTCGCAAAGGGAGCATGAAGCGATTGTGAAATCGGTTCCTGCTAGTCAGATTGAGAATTCGAAACCTCAGTGTGCTAGAGCTATGCCGAAAGCGTGGAGGCCTGATGATGCTTTTCGTCCCCAGAGTCTGCCCAATTTGGCGAAGCAGCTCAGCTTGCCAAATTCCAGCGGGAAACGGTTCGGTGGCGGTGTTGCGTGGGGATGCAACAGTGTGGTATCTCCGCCGTCTTCGTGTCCTATATGCTACGAGGATTTGGACTTGACAGACACCAGCTTCTTGCCGTGCTTGTGTGGATTCAGGCTCTGCCTTTTCTGTCACAAGAGGATTCTTGAGGGGACGGTCGCTGTCCCGGCTGCAGGAAGCCCTATGAGAATGAGCCTGTTGAGGCAGAGACAAGTGTCCATGGAGGTAGTCTTACATTCAGGTTGCCTCGTTCGTGTAGCATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000075 GO:0000077 GO:0000278 GO:0000288 GO:0000289 GO:0000956 GO:0002682 GO:0003674 GO:0003824 GO:0004842 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006139 GO:0006401 GO:0006402 GO:0006464 GO:0006508 GO:0006511 GO:0006725 GO:0006807 GO:0006950 GO:0006974 GO:0006977 GO:0007049 GO:0007093 GO:0007154 GO:0007165 GO:0007346 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009892 GO:0009987 GO:0010468 GO:0010564 GO:0010605 GO:0010629 GO:0010948 GO:0016070 GO:0016071 GO:0016567 GO:0016740 GO:0019222 GO:0019439 GO:0019538 GO:0019787 GO:0019941 GO:0022402 GO:0023052 GO:0030163 GO:0030330 GO:0031570 GO:0031571 GO:0032446 GO:0033554 GO:0034641 GO:0034655 GO:0035556 GO:0036211 GO:0042770 GO:0043170 GO:0043412 GO:0043632 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0044270 GO:0044424 GO:0044444 GO:0044464 GO:0044773 GO:0044774 GO:0044783 GO:0044819 GO:0045595 GO:0045637 GO:0045652 GO:0045786 GO:0045787 GO:0045930 GO:0046483 GO:0046700 GO:0048518 GO:0048519 GO:0048522 GO:0048523 GO:0050789 GO:0050793 GO:0050794 GO:0050896 GO:0051239 GO:0051603 GO:0051716 GO:0051726 GO:0051865 GO:0060255 GO:0065007 GO:0070647 GO:0071156 GO:0071158 GO:0071704 GO:0072331 GO:0072395 GO:0072401 GO:0072413 GO:0072422 GO:0072431 GO:0090068 GO:0090304 GO:0140096 GO:1901360 GO:1901361 GO:1901564 GO:1901565 GO:1901575 GO:1901987 GO:1901988 GO:1901990 GO:1901991 GO:1902400 GO:1902402 GO:1902403 GO:1902806 GO:1902807 GO:1903047 GO:1903706 GO:2000026 GO:2000045 GO:2000134
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
zf-RING_4

Protein Analysis

320

Amino Acids

34.83

Weight (kDa)

6.63

Isoelectric Point (pI)

62.88

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
zf-RING_4 PF14570 250 - 284 4e-12 RING/Ubox like zinc-binding domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 205
AccII CGCG 1 cut(s) 123
AclI AACGTT 1 cut(s) 24
AclWI GGATC 2 cut(s) 250, 259
AcoI YGGCCR 1 cut(s) 349
AcsI RAATTY 2 cut(s) 571, 676
AcuI CTGAAG 1 cut(s) 123
AcyI GRCGYC 1 cut(s) 474
AfiI CCNNNNNNNGG 3 cut(s) 236, 358, 872
AgsI TTSAA 2 cut(s) 97, 191
AjnI CCWGG 3 cut(s) 53, 80, 447
AloI GAACNNNNNNTCC 2 cut(s) 305, 337
AluBI AGCT 6 cut(s) 109, 327, 596, 664, 669, 789
AluI AGCT 6 cut(s) 109, 327, 596, 664, 669, 789
Alw26I GTCTC 2 cut(s) 356, 901
AlwI GGATC 2 cut(s) 250, 259
AlwNI CAGNNNCTG 2 cut(s) 643, 819
AoxI GGCC 5 cut(s) 39, 78, 227, 349, 614
ApeKI GCWGC 6 cut(s) 381, 390, 393, 444, 661, 869
ApoI RAATTY 2 cut(s) 571, 676
ArsI GACNNNNNNTTYG 2 cut(s) 305, 337
Asp700I GAANNNNTTC 1 cut(s) 692
AspA2I CCTAGG 1 cut(s) 215
AspLEI GCGC 1 cut(s) 53
AspS9I GGNCC 3 cut(s) 40, 78, 227
AsuC2I CCSGG 1 cut(s) 866
AsuHPI GGTGA 5 cut(s) 10, 163, 361, 410, 412
AsuII TTCGAA 1 cut(s) 575
AvrII CCTAGG 1 cut(s) 215
BauI CACGAG 1 cut(s) 331
BbsI GAAGAC 1 cut(s) 735
BbvI GCAGC 6 cut(s) 393, 402, 405, 431, 673, 856
BccI CCATC 1 cut(s) 434
BceAI ACGGC 3 cut(s) 196, 724, 781
BciT130I CCWGG 3 cut(s) 55, 82, 449
BcnI CCSGG 1 cut(s) 866
BcoDI GTCTC 2 cut(s) 356, 901
BfaI CTAG 3 cut(s) 216, 558, 591
BfmI CTRYAG 1 cut(s) 870
BfoI RGCGCY 1 cut(s) 54
BglI GCCNNNNNGGC 2 cut(s) 86, 482
BisI GCNGC 9 cut(s) 121, 349, 382, 391, 394, 445, 483, 662, 870
BlnI CCTAGG 1 cut(s) 215
BlpI GCTNAGC 1 cut(s) 665
BlsI GCNGC 9 cut(s) 122, 350, 383, 392, 395, 446, 484, 663, 871
Bme1390I CCNGG 4 cut(s) 55, 82, 449, 866
BmgT120I GGNCC 3 cut(s) 40, 78, 227
BmiI GGNNCC 4 cut(s) 42, 228, 376, 552
BmrFI CCNGG 4 cut(s) 55, 82, 449, 866
BmsI GCATC 2 cut(s) 613, 707
BoxI GACNNNNGTC 1 cut(s) 913
BpiI GAAGAC 1 cut(s) 735
BpmI CTGGAG 1 cut(s) 361
Bpu1102I GCTNAGC 1 cut(s) 665
Bpu14I TTCGAA 1 cut(s) 575
BpuEI CTTGAG 1 cut(s) 866
BpuMI CCSGG 1 cut(s) 866
Bsa29I ATCGAT 1 cut(s) 254
BsaHI GRCGYC 1 cut(s) 474
BsaJI CCNNGG 6 cut(s) 36, 54, 215, 423, 477, 918
BsaWI WCCGGW 1 cut(s) 410
BsaXI ACNNNNNCTCC 4 cut(s) 231, 261, 392, 422
Bsc4I CCNNNNNNNGG 3 cut(s) 236, 358, 872
Bse118I RCCGGY 1 cut(s) 371
Bse3DI GCAATG 1 cut(s) 134
BseBI CCWGG 3 cut(s) 55, 82, 449
BseCI ATCGAT 1 cut(s) 254
BseDI CCNNGG 6 cut(s) 36, 54, 215, 423, 477, 918
BseGI GGATG 5 cut(s) 436, 442, 457, 493, 722
BseLI CCNNNNNNNGG 3 cut(s) 236, 358, 872
BseMI GCAATG 1 cut(s) 134
BseMII CTCAG 2 cut(s) 596, 679
BseRI GAGGAG 1 cut(s) 440
BseXI GCAGC 6 cut(s) 393, 402, 405, 431, 673, 856
BsgI GTGCAG 1 cut(s) 184
Bsh1236I CGCG 1 cut(s) 123
Bsh1285I CGRYCG 1 cut(s) 858
BshFI GGCC 5 cut(s) 41, 80, 229, 351, 616
BshVI ATCGAT 1 cut(s) 254
BsiEI CGRYCG 1 cut(s) 858
BsiSI CCGG 3 cut(s) 372, 411, 866
BslFI GGGAC 3 cut(s) 618, 848, 865
BslI CCNNNNNNNGG 3 cut(s) 236, 358, 872
BsmAI GTCTC 2 cut(s) 356, 901
BsmFI GGGAC 3 cut(s) 618, 848, 865
BsnI GGCC 5 cut(s) 41, 80, 229, 351, 616
Bsp119I TTCGAA 1 cut(s) 575
Bsp143I GATC 3 cut(s) 15, 251, 255
Bsp1720I GCTNAGC 1 cut(s) 665
Bsp19I CCATGG 1 cut(s) 918
BspANI GGCC 5 cut(s) 41, 80, 229, 351, 616
BspCNI CTCAG 2 cut(s) 595, 678
BspDI ATCGAT 1 cut(s) 254
BspFNI CGCG 1 cut(s) 123
BspLI GGNNCC 4 cut(s) 42, 228, 376, 552
BspMAI CTGCAG 1 cut(s) 874
BspPI GGATC 2 cut(s) 250, 259
BspT104I TTCGAA 1 cut(s) 575
BsrBI CCGCTC 1 cut(s) 205
BsrDI GCAATG 1 cut(s) 134
BsrFI RCCGGY 1 cut(s) 371
BssAI RCCGGY 1 cut(s) 371
BssECI CCNNGG 6 cut(s) 36, 54, 215, 423, 477, 918
BssMI GATC 3 cut(s) 15, 251, 255
BssNI GRCGYC 1 cut(s) 474
BssSI CACGAG 1 cut(s) 331
BssT1I CCWWGG 3 cut(s) 215, 477, 918
Bst2BI CACGAG 1 cut(s) 331
Bst2UI CCWGG 3 cut(s) 55, 82, 449
Bst4CI ACNGT 5 cut(s) 317, 404, 693, 725, 856
Bst6I CTCTTC 1 cut(s) 68
BstACI GRCGYC 1 cut(s) 474
BstBI TTCGAA 1 cut(s) 575
BstC8I GCNNGC 3 cut(s) 107, 125, 671
BstDEI CTNAG 2 cut(s) 582, 665
BstDSI CCRYGG 1 cut(s) 918
BstF5I GGATG 5 cut(s) 436, 442, 457, 493, 722
BstFNI CGCG 1 cut(s) 123
BstH2I RGCGCY 1 cut(s) 54
BstHHI GCGC 1 cut(s) 53
BstKTI GATC 3 cut(s) 18, 254, 258
BstMAI GTCTC 2 cut(s) 356, 901
BstMBI GATC 3 cut(s) 15, 251, 255
BstMCI CGRYCG 1 cut(s) 858
BstMWI GCNNNNNNNGC 9 cut(s) 86, 106, 381, 387, 390, 482, 526, 670, 866
BstNI CCWGG 3 cut(s) 55, 82, 449
BstPAI GACNNNNGTC 1 cut(s) 913
BstSCI CCNGG 4 cut(s) 53, 80, 447, 864
BstSFI CTRYAG 1 cut(s) 870
BstUI CGCG 1 cut(s) 123
BstV1I GCAGC 6 cut(s) 393, 402, 405, 431, 673, 856
BstV2I GAAGAC 1 cut(s) 735
BstXI CCANNNNNNTGG 1 cut(s) 61
Bsu15I ATCGAT 1 cut(s) 254
BsuRI GGCC 5 cut(s) 41, 80, 229, 351, 616
BsuTUI ATCGAT 1 cut(s) 254
BtgI CCRYGG 1 cut(s) 918
BtsCI GGATG 5 cut(s) 436, 442, 457, 493, 722
BtsI GCAGTG 1 cut(s) 107
BtsIMutI CAGTG 3 cut(s) 107, 590, 730
Cac8I GCNNGC 3 cut(s) 107, 125, 671
CaiI CAGNNNCTG 2 cut(s) 643, 819
CfoI GCGC 1 cut(s) 53
Cfr10I RCCGGY 1 cut(s) 371
Cfr13I GGNCC 3 cut(s) 40, 78, 227
ClaI ATCGAT 1 cut(s) 254
CseI GACGC 1 cut(s) 482
CviAII CATG 4 cut(s) 293, 530, 919, 960
DdeI CTNAG 2 cut(s) 582, 665
DpnI GATC 3 cut(s) 17, 253, 257
DpnII GATC 3 cut(s) 15, 251, 255
EaeI YGGCCR 1 cut(s) 349
Eam1104I CTCTTC 1 cut(s) 68
EarI CTCTTC 1 cut(s) 68
EciI GGCGGA 3 cut(s) 485, 500, 726
Eco130I CCWWGG 3 cut(s) 215, 477, 918
Eco147I AGGCCT 1 cut(s) 616
Eco57I CTGAAG 1 cut(s) 123
EcoRI GAATTC 1 cut(s) 571
EcoRII CCWGG 3 cut(s) 53, 80, 447
EcoT14I CCWWGG 3 cut(s) 215, 477, 918
ErhI CCWWGG 3 cut(s) 215, 477, 918
FaeI CATG 4 cut(s) 296, 533, 922, 963
FaiI YATR 8 cut(s) 294, 531, 599, 755, 757, 884, 920, 961
FaqI GGGAC 3 cut(s) 618, 848, 865
FatI CATG 4 cut(s) 292, 529, 918, 959
FauI CCCGC 1 cut(s) 677
Fnu4HI GCNGC 9 cut(s) 121, 349, 382, 391, 394, 445, 483, 662, 870
FokI GGATG 5 cut(s) 443, 449, 464, 500, 729
Fsp4HI GCNGC 9 cut(s) 121, 349, 382, 391, 394, 445, 483, 662, 870
FspBI CTAG 3 cut(s) 216, 558, 591
GlaI GCGC 1 cut(s) 52
GluI GCNGC 9 cut(s) 121, 349, 382, 391, 394, 445, 483, 662, 870
GsuI CTGGAG 1 cut(s) 361
HaeII RGCGCY 1 cut(s) 54
HaeIII GGCC 5 cut(s) 41, 80, 229, 351, 616
HapII CCGG 3 cut(s) 372, 411, 866
HgaI GACGC 1 cut(s) 482
HhaI GCGC 1 cut(s) 53
Hin1I GRCGYC 1 cut(s) 474
Hin1II CATG 4 cut(s) 296, 533, 922, 963
Hin6I GCGC 1 cut(s) 51
HinP1I GCGC 1 cut(s) 51
HinfI GANTC 8 cut(s) 11, 308, 356, 508, 515, 640, 810, 841
HpaII CCGG 3 cut(s) 372, 411, 866
HphI GGTGA 5 cut(s) 10, 163, 361, 410, 412
Hpy188I TCNGA 4 cut(s) 10, 251, 361, 564
Hpy188III TCNNGA 3 cut(s) 331, 512, 845
Hpy99I CGWCG 1 cut(s) 251
HpyAV CCTTC 2 cut(s) 151, 230
HpyCH4III ACNGT 5 cut(s) 317, 404, 693, 725, 856
HpyCH4IV ACGT 3 cut(s) 24, 114, 246
HpyCH4V TGCA 4 cut(s) 105, 165, 720, 872
HpyF10VI GCNNNNNNNGC 9 cut(s) 86, 106, 381, 387, 390, 482, 526, 670, 866
HpyF3I CTNAG 2 cut(s) 582, 665
HpySE526I ACGT 3 cut(s) 24, 114, 246
Hsp92I GRCGYC 1 cut(s) 474
Hsp92II CATG 4 cut(s) 296, 533, 922, 963
HspAI GCGC 1 cut(s) 51
Kzo9I GATC 3 cut(s) 15, 251, 255
LmnI GCTCC 3 cut(s) 380, 413, 526
Lsp1109I GCAGC 6 cut(s) 393, 402, 405, 431, 673, 856
LweI GCATC 2 cut(s) 613, 707
MaeI CTAG 3 cut(s) 216, 558, 591
MaeII ACGT 3 cut(s) 24, 114, 246
MaeIII GTNAC 2 cut(s) 398, 830
MalI GATC 3 cut(s) 17, 253, 257
MbiI CCGCTC 1 cut(s) 205
MboI GATC 3 cut(s) 15, 251, 255
MboII GAAGA 5 cut(s) 82, 85, 129, 166, 735
MluCI AATT 4 cut(s) 92, 571, 649, 676
MlyI GAGTC 4 cut(s) 5, 302, 524, 649
MmeI TCCRAC 2 cut(s) 33, 229
MroXI GAANNNNTTC 1 cut(s) 692
MslI CAYNNNNRTG 1 cut(s) 291
MspA1I CMGCKG 2 cut(s) 396, 684
MspI CCGG 3 cut(s) 372, 411, 866
MspR9I CCNGG 4 cut(s) 55, 82, 449, 866
MvaI CCWGG 3 cut(s) 55, 82, 449
MvnI CGCG 1 cut(s) 123
MwoI GCNNNNNNNGC 9 cut(s) 86, 106, 381, 387, 390, 482, 526, 670, 866
NciI CCSGG 1 cut(s) 866
NcoI CCATGG 1 cut(s) 918
NdeII GATC 3 cut(s) 15, 251, 255
NlaIII CATG 4 cut(s) 296, 533, 922, 963
NlaIV GGNNCC 4 cut(s) 42, 228, 376, 552
NmeAIII GCCGAG 1 cut(s) 17
NmuCI GTSAC 2 cut(s) 398, 830
NspV TTCGAA 1 cut(s) 575
PceI AGGCCT 1 cut(s) 616
PcsI WCGNNNNNNNCGW 2 cut(s) 120, 317
PdmI GAANNNNTTC 1 cut(s) 692
PfeI GAWTC 4 cut(s) 356, 508, 810, 841
PkrI GCNGC 9 cut(s) 122, 350, 383, 392, 395, 446, 484, 663, 871
PleI GAGTC 4 cut(s) 5, 302, 523, 648
PpsI GAGTC 4 cut(s) 5, 302, 523, 648
PshAI GACNNNNGTC 1 cut(s) 913
Psp1406I AACGTT 1 cut(s) 24
Psp6I CCWGG 3 cut(s) 53, 80, 447
PspGI CCWGG 3 cut(s) 53, 80, 447
PspN4I GGNNCC 4 cut(s) 42, 228, 376, 552
PspPI GGNCC 3 cut(s) 40, 78, 227
PstI CTGCAG 1 cut(s) 874
PstNI CAGNNNCTG 2 cut(s) 643, 819
RseI CAYNNNNRTG 1 cut(s) 291
SatI GCNGC 9 cut(s) 121, 349, 382, 391, 394, 445, 483, 662, 870
Sau3AI GATC 3 cut(s) 15, 251, 255
Sau96I GGNCC 3 cut(s) 40, 78, 227
SchI GAGTC 4 cut(s) 5, 302, 524, 649
ScrFI CCNGG 4 cut(s) 55, 82, 449, 866
SfaNI GCATC 2 cut(s) 613, 707
SfcI CTRYAG 1 cut(s) 870
SfuI TTCGAA 1 cut(s) 575
SmiMI CAYNNNNRTG 1 cut(s) 291
SmlI CTYRAG 1 cut(s) 845
SmoI CTYRAG 1 cut(s) 845
Sse9I AATT 4 cut(s) 92, 571, 649, 676
SseBI AGGCCT 1 cut(s) 616
SspMI CTAG 3 cut(s) 216, 558, 591
StuI AGGCCT 1 cut(s) 616
StyD4I CCNGG 4 cut(s) 53, 80, 447, 864
StyI CCWWGG 3 cut(s) 215, 477, 918
TaaI ACNGT 5 cut(s) 317, 404, 693, 725, 856
TaiI ACGT 3 cut(s) 27, 117, 249
TaqI TCGA 5 cut(s) 14, 254, 311, 497, 575
TasI AATT 4 cut(s) 92, 571, 649, 676
TauI GCSGC 3 cut(s) 123, 351, 485
TfiI GAWTC 4 cut(s) 356, 508, 810, 841
TscAI CASTG 3 cut(s) 107, 590, 730
TseFI GTSAC 2 cut(s) 398, 830
TseI GCWGC 6 cut(s) 381, 390, 393, 444, 661, 869
Tsp45I GTSAC 2 cut(s) 398, 830
TspDTI ATGAA 1 cut(s) 546
TspGWI ACGGA 1 cut(s) 309
TspRI CASTG 3 cut(s) 107, 590, 730
XapI RAATTY 2 cut(s) 571, 676
XmaJI CCTAGG 1 cut(s) 215
XmnI GAANNNNTTC 1 cut(s) 692
XspI CTAG 3 cut(s) 216, 558, 591
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.