FvH4_5g16220

RING/Ubox like zinc-binding domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb5
OG0005751
Physical Location & Seq
Forward (+)
9253308 .. 9256063
2756 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_5g16220.t3

Sequence Viewer

Length: 963 bp
ATGGTTTCCGATTCGATCACCAACGTCTCCATTCCTTCCGCCCCAATCAACAGCAAAAGCGCCCGCGATTTGAGCAAGAAGAAGAGGGCGAGGTCAGCCAAATTGAAGCAGTGCAAGCTGGACGTTCGCCGCGAGCAGTGGCTTTCTTCAGGTGCGGTGAAGAATAAGGACGGCAAGGAGGAGCAGCACGGCGGCGTTCAAGGCCGCAGAGAGCGGAGTAGCCCTCGGTCCTTGCAGGAAATGGGGCCGAGAGAGGGAGAGAACGTCGGATCGATCCCTCGGCAGCACCACCACCACCACCATGACAGTGATTTGGAATCGAACAGTCCGTCCAGCTTCACGAGTAGTGTGCTGGGCGGCCATGATTCGGAGACTTTCACCGGCTCCAGCAGCAGTAGCAGCAGCAGCGGAGACTGTTGCTCTGGTAATATCACCGAGGAGGATGAGGATGATGGCTGCCTGGATGATTGGGAGGCCGTGGCGGATGCGTTGGCGGCGGATGAGAAGCCGAAGGAACCACCCCGGGAGCGTGAGGCGGTTGTGAAAACGGTTCCTCCTCGTCAGACTGAGAATTCGAAGCCTCAGTGTGGGAGAGCTATGCCTAAAGCTTGGAGGCCTGATGATGCTTTTCGCCCCCATTGTCTGCCCAATTTGGCTAAGCAGCTCAGCTTGCCGAATAATAGCGGGAAACGATTTGGTGGTGGTGTTCCGTGGGCCTGTAACAGTGTGGCGTCTCCTCCCTCTTCGTGTCCTATATGCTATGAAGATTTGGACTTGACAGACACCAGCTTTTTGCCGTGCTTGTGTGGATTCAGGCTCTGCCTTTTCTGCCACAAGAGGATTCTTGAGGGGGATGGTCGCTGTCCTGGCTGCAGGAAGCCCTATGAGAATGAGCCTATTGAGGCGGAGACAAGTGTCCATGGAGAAGGCATCATTGTAAATGAGTGGTTCGTAACGGTCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000075 GO:0000077 GO:0000278 GO:0000288 GO:0000289 GO:0000956 GO:0002682 GO:0003674 GO:0003824 GO:0004842 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006139 GO:0006401 GO:0006402 GO:0006464 GO:0006508 GO:0006511 GO:0006725 GO:0006807 GO:0006950 GO:0006974 GO:0006977 GO:0007049 GO:0007093 GO:0007154 GO:0007165 GO:0007346 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009892 GO:0009987 GO:0010468 GO:0010564 GO:0010605 GO:0010629 GO:0010948 GO:0016070 GO:0016071 GO:0016567 GO:0016740 GO:0019222 GO:0019439 GO:0019538 GO:0019787 GO:0019941 GO:0022402 GO:0023052 GO:0030163 GO:0030330 GO:0031570 GO:0031571 GO:0032446 GO:0033554 GO:0034641 GO:0034655 GO:0035556 GO:0036211 GO:0042770 GO:0043170 GO:0043412 GO:0043632 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0044270 GO:0044424 GO:0044444 GO:0044464 GO:0044773 GO:0044774 GO:0044783 GO:0044819 GO:0045595 GO:0045637 GO:0045652 GO:0045786 GO:0045787 GO:0045930 GO:0046483 GO:0046700 GO:0048518 GO:0048519 GO:0048522 GO:0048523 GO:0050789 GO:0050793 GO:0050794 GO:0050896 GO:0051239 GO:0051603 GO:0051716 GO:0051726 GO:0051865 GO:0060255 GO:0065007 GO:0070647 GO:0071156 GO:0071158 GO:0071704 GO:0072331 GO:0072395 GO:0072401 GO:0072413 GO:0072422 GO:0072431 GO:0090068 GO:0090304 GO:0140096 GO:1901360 GO:1901361 GO:1901564 GO:1901565 GO:1901575 GO:1901987 GO:1901988 GO:1901990 GO:1901991 GO:1902400 GO:1902402 GO:1902403 GO:1902806 GO:1902807 GO:1903047 GO:1903706 GO:2000026 GO:2000045 GO:2000134
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
zf-RING_4

Protein Analysis

321

Amino Acids

34.99

Weight (kDa)

6.02

Isoelectric Point (pI)

60.94

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
zf-RING_4 PF14570 250 - 296 2.9e-18 RING/Ubox like zinc-binding domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 214
AccII CGCG 2 cut(s) 66, 132
AclWI GGATC 2 cut(s) 268, 277
AcoI YGGCCR 1 cut(s) 358
AcsI RAATTY 1 cut(s) 571
AcuI CTGAAG 1 cut(s) 132
AcyI GRCGYC 1 cut(s) 731
AfiI CCNNNNNNNGG 3 cut(s) 254, 367, 587
AgsI TTSAA 2 cut(s) 106, 200
AjnI CCWGG 2 cut(s) 459, 865
AloI GAACNNNNNNTCC 2 cut(s) 314, 346
AluBI AGCT 7 cut(s) 118, 336, 596, 608, 664, 669, 789
AluI AGCT 7 cut(s) 118, 336, 596, 608, 664, 669, 789
Alw26I GTCTC 5 cut(s) 31, 365, 405, 738, 902
AlwI GGATC 2 cut(s) 268, 277
AlwNI CAGNNNCTG 1 cut(s) 819
Ama87I CYCGRG 1 cut(s) 522
AoxI GGCC 6 cut(s) 202, 245, 358, 474, 614, 714
ApeKI GCWGC 9 cut(s) 184, 283, 390, 399, 402, 405, 456, 661, 870
ApoI RAATTY 1 cut(s) 571
ArsI GACNNNNNNTTYG 4 cut(s) 314, 346, 556, 588
AspLEI GCGC 1 cut(s) 62
AspS9I GGNCC 3 cut(s) 228, 245, 714
AsuC2I CCSGG 2 cut(s) 523, 524
AsuHPI GGTGA 4 cut(s) 10, 169, 370, 424
AsuII TTCGAA 1 cut(s) 575
AvaI CYCGRG 1 cut(s) 522
AvaII GGWCC 1 cut(s) 228
BauI CACGAG 1 cut(s) 340
BbvI GCAGC 9 cut(s) 196, 295, 402, 411, 414, 417, 443, 673, 857
BccI CCATC 2 cut(s) 446, 848
BceAI ACGGC 4 cut(s) 187, 205, 461, 781
BcgI CGANNNNNNTGC 2 cut(s) 331, 365
BciT130I CCWGG 2 cut(s) 461, 867
BcnI CCSGG 2 cut(s) 523, 524
BcoDI GTCTC 5 cut(s) 31, 365, 405, 738, 902
BfmI CTRYAG 1 cut(s) 871
BfoI RGCGCY 1 cut(s) 63
BlpI GCTNAGC 2 cut(s) 657, 665
Bme1390I CCNGG 4 cut(s) 461, 523, 524, 867
Bme18I GGWCC 1 cut(s) 228
BmeT110I CYCGRG 1 cut(s) 522
BmgT120I GGNCC 3 cut(s) 228, 245, 714
BmiI GGNNCC 4 cut(s) 246, 385, 516, 552
BmrFI CCNGG 4 cut(s) 461, 523, 524, 867
BmsI GCATC 3 cut(s) 475, 613, 939
BoxI GACNNNNGTC 1 cut(s) 914
BplI GAGNNNNNCTC 2 cut(s) 208, 240
BpmI CTGGAG 1 cut(s) 370
Bpu1102I GCTNAGC 2 cut(s) 657, 665
Bpu14I TTCGAA 1 cut(s) 575
BpuEI CTTGAG 1 cut(s) 866
BpuMI CCSGG 2 cut(s) 523, 524
Bsa29I ATCGAT 1 cut(s) 272
BsaHI GRCGYC 1 cut(s) 731
BsaJI CCNNGG 8 cut(s) 224, 278, 435, 477, 521, 522, 710, 919
BsaXI ACNNNNNCTCC 4 cut(s) 249, 279, 538, 568
Bsc4I CCNNNNNNNGG 3 cut(s) 254, 367, 587
Bse118I RCCGGY 1 cut(s) 380
BseBI CCWGG 2 cut(s) 461, 867
BseCI ATCGAT 1 cut(s) 272
BseDI CCNNGG 8 cut(s) 224, 278, 435, 477, 521, 522, 710, 919
BseGI GGATG 6 cut(s) 448, 454, 469, 490, 505, 859
BseLI CCNNNNNNNGG 3 cut(s) 254, 367, 587
BseMII CTCAG 3 cut(s) 558, 596, 679
BseRI GAGGAG 4 cut(s) 194, 452, 546, 726
BseXI GCAGC 9 cut(s) 196, 295, 402, 411, 414, 417, 443, 673, 857
BseYI CCCAGC 1 cut(s) 352
Bsh1236I CGCG 2 cut(s) 66, 132
BshFI GGCC 6 cut(s) 204, 247, 360, 476, 616, 716
BshVI ATCGAT 1 cut(s) 272
BsiHKCI CYCGRG 1 cut(s) 522
BsiSI CCGG 2 cut(s) 381, 523
BslI CCNNNNNNNGG 3 cut(s) 254, 367, 587
BsmAI GTCTC 5 cut(s) 31, 365, 405, 738, 902
BsmBI CGTCTC 2 cut(s) 31, 738
BsnI GGCC 6 cut(s) 204, 247, 360, 476, 616, 716
BsoBI CYCGRG 1 cut(s) 522
Bsp119I TTCGAA 1 cut(s) 575
Bsp143I GATC 3 cut(s) 15, 269, 273
Bsp1720I GCTNAGC 2 cut(s) 657, 665
Bsp19I CCATGG 1 cut(s) 919
BspANI GGCC 6 cut(s) 204, 247, 360, 476, 616, 716
BspCNI CTCAG 3 cut(s) 559, 595, 678
BspDI ATCGAT 1 cut(s) 272
BspFNI CGCG 2 cut(s) 66, 132
BspLI GGNNCC 4 cut(s) 246, 385, 516, 552
BspMAI CTGCAG 1 cut(s) 875
BspPI GGATC 2 cut(s) 268, 277
BspT104I TTCGAA 1 cut(s) 575
BsrBI CCGCTC 1 cut(s) 214
BsrFI RCCGGY 1 cut(s) 380
BssAI RCCGGY 1 cut(s) 380
BssECI CCNNGG 8 cut(s) 224, 278, 435, 477, 521, 522, 710, 919
BssMI GATC 3 cut(s) 15, 269, 273
BssNI GRCGYC 1 cut(s) 731
BssSI CACGAG 1 cut(s) 340
BssT1I CCWWGG 1 cut(s) 919
Bst2BI CACGAG 1 cut(s) 340
Bst2UI CCWGG 2 cut(s) 461, 867
Bst4CI ACNGT 6 cut(s) 308, 326, 416, 550, 725, 958
Bst6I CTCTTC 2 cut(s) 77, 748
BstACI GRCGYC 1 cut(s) 731
BstBI TTCGAA 1 cut(s) 575
BstC8I GCNNGC 4 cut(s) 64, 116, 134, 671
BstDEI CTNAG 4 cut(s) 567, 582, 657, 665
BstDSI CCRYGG 3 cut(s) 477, 710, 919
BstF5I GGATG 6 cut(s) 448, 454, 469, 490, 505, 859
BstFNI CGCG 2 cut(s) 66, 132
BstH2I RGCGCY 1 cut(s) 63
BstHHI GCGC 1 cut(s) 62
BstKTI GATC 3 cut(s) 18, 272, 276
BstMAI GTCTC 5 cut(s) 31, 365, 405, 738, 902
BstMBI GATC 3 cut(s) 15, 269, 273
BstNI CCWGG 2 cut(s) 461, 867
BstPAI GACNNNNGTC 1 cut(s) 914
BstSCI CCNGG 4 cut(s) 459, 521, 522, 865
BstSFI CTRYAG 1 cut(s) 871
BstUI CGCG 2 cut(s) 66, 132
BstV1I GCAGC 9 cut(s) 196, 295, 402, 411, 414, 417, 443, 673, 857
Bsu15I ATCGAT 1 cut(s) 272
BsuRI GGCC 6 cut(s) 204, 247, 360, 476, 616, 716
BsuTUI ATCGAT 1 cut(s) 272
BtgI CCRYGG 3 cut(s) 477, 710, 919
BtsCI GGATG 6 cut(s) 448, 454, 469, 490, 505, 859
BtsI GCAGTG 2 cut(s) 116, 143
BtsIMutI CAGTG 5 cut(s) 116, 143, 313, 590, 730
Cac8I GCNNGC 4 cut(s) 64, 116, 134, 671
CaiI CAGNNNCTG 1 cut(s) 819
CfoI GCGC 1 cut(s) 62
Cfr10I RCCGGY 1 cut(s) 380
Cfr13I GGNCC 3 cut(s) 228, 245, 714
Cfr9I CCCGGG 1 cut(s) 522
ClaI ATCGAT 1 cut(s) 272
CseI GACGC 1 cut(s) 720
CviAII CATG 3 cut(s) 302, 362, 920
DdeI CTNAG 4 cut(s) 567, 582, 657, 665
DpnI GATC 3 cut(s) 17, 271, 275
DpnII GATC 3 cut(s) 15, 269, 273
EaeI YGGCCR 1 cut(s) 358
Eam1104I CTCTTC 2 cut(s) 77, 748
EarI CTCTTC 2 cut(s) 77, 748
EciI GGCGGA 4 cut(s) 28, 497, 512, 920
Eco130I CCWWGG 1 cut(s) 919
Eco147I AGGCCT 1 cut(s) 616
Eco47I GGWCC 1 cut(s) 228
Eco57I CTGAAG 1 cut(s) 132
Eco88I CYCGRG 1 cut(s) 522
EcoRI GAATTC 1 cut(s) 571
EcoRII CCWGG 2 cut(s) 459, 865
EcoT14I CCWWGG 1 cut(s) 919
ErhI CCWWGG 1 cut(s) 919
Esp3I CGTCTC 2 cut(s) 31, 738
FaeI CATG 3 cut(s) 305, 365, 923
FaiI YATR 8 cut(s) 303, 363, 599, 755, 757, 762, 885, 921
FatI CATG 3 cut(s) 301, 361, 919
FauI CCCGC 2 cut(s) 71, 677
FokI GGATG 6 cut(s) 455, 461, 476, 497, 512, 866
GlaI GCGC 1 cut(s) 61
GsaI CCCAGC 1 cut(s) 356
GsuI CTGGAG 1 cut(s) 370
HaeII RGCGCY 1 cut(s) 63
HaeIII GGCC 6 cut(s) 204, 247, 360, 476, 616, 716
HapII CCGG 2 cut(s) 381, 523
HgaI GACGC 1 cut(s) 720
HhaI GCGC 1 cut(s) 62
Hin1I GRCGYC 1 cut(s) 731
Hin1II CATG 3 cut(s) 305, 365, 923
Hin6I GCGC 1 cut(s) 60
HinP1I GCGC 1 cut(s) 60
HindIII AAGCTT 1 cut(s) 606
HinfI GANTC 5 cut(s) 11, 317, 365, 810, 841
HpaII CCGG 2 cut(s) 381, 523
HphI GGTGA 4 cut(s) 10, 169, 370, 424
Hpy188I TCNGA 4 cut(s) 10, 269, 370, 564
Hpy188III TCNNGA 2 cut(s) 340, 845
Hpy99I CGWCG 1 cut(s) 269
HpyAV CCTTC 3 cut(s) 45, 505, 920
HpyCH4III ACNGT 6 cut(s) 308, 326, 416, 550, 725, 958
HpyCH4IV ACGT 3 cut(s) 24, 123, 264
HpyCH4V TGCA 3 cut(s) 114, 235, 873
HpyF3I CTNAG 4 cut(s) 567, 582, 657, 665
HpySE526I ACGT 3 cut(s) 24, 123, 264
Hsp92I GRCGYC 1 cut(s) 731
Hsp92II CATG 3 cut(s) 305, 365, 923
HspAI GCGC 1 cut(s) 60
Kzo9I GATC 3 cut(s) 15, 269, 273
LmnI GCTCC 3 cut(s) 181, 389, 526
Lsp1109I GCAGC 9 cut(s) 196, 295, 402, 411, 414, 417, 443, 673, 857
LweI GCATC 3 cut(s) 475, 613, 939
MaeII ACGT 3 cut(s) 24, 123, 264
MaeIII GTNAC 2 cut(s) 719, 952
MalI GATC 3 cut(s) 17, 271, 275
MbiI CCGCTC 1 cut(s) 214
MboI GATC 3 cut(s) 15, 269, 273
MboII GAAGA 6 cut(s) 91, 94, 138, 172, 735, 776
MluCI AATT 3 cut(s) 101, 571, 649
MmeI TCCRAC 1 cut(s) 247
MslI CAYNNNNRTG 2 cut(s) 300, 306
MspA1I CMGCKG 1 cut(s) 408
MspI CCGG 2 cut(s) 381, 523
MspR9I CCNGG 4 cut(s) 461, 523, 524, 867
MvaI CCWGG 2 cut(s) 461, 867
MvnI CGCG 2 cut(s) 66, 132
NciI CCSGG 2 cut(s) 523, 524
NcoI CCATGG 1 cut(s) 919
NdeII GATC 3 cut(s) 15, 269, 273
NlaIII CATG 3 cut(s) 305, 365, 923
NlaIV GGNNCC 4 cut(s) 246, 385, 516, 552
NmeAIII GCCGAG 2 cut(s) 259, 273
NspV TTCGAA 1 cut(s) 575
PceI AGGCCT 1 cut(s) 616
PcsI WCGNNNNNNNCGW 2 cut(s) 129, 326
PfeI GAWTC 5 cut(s) 11, 317, 365, 810, 841
PshAI GACNNNNGTC 1 cut(s) 914
Psp6I CCWGG 2 cut(s) 459, 865
PspFI CCCAGC 1 cut(s) 352
PspGI CCWGG 2 cut(s) 459, 865
PspN4I GGNNCC 4 cut(s) 246, 385, 516, 552
PspPI GGNCC 3 cut(s) 228, 245, 714
PstI CTGCAG 1 cut(s) 875
PstNI CAGNNNCTG 1 cut(s) 819
RseI CAYNNNNRTG 2 cut(s) 300, 306
Sau3AI GATC 3 cut(s) 15, 269, 273
Sau96I GGNCC 3 cut(s) 228, 245, 714
ScrFI CCNGG 4 cut(s) 461, 523, 524, 867
SfaNI GCATC 3 cut(s) 475, 613, 939
SfcI CTRYAG 1 cut(s) 871
SfuI TTCGAA 1 cut(s) 575
SinI GGWCC 1 cut(s) 228
SmaI CCCGGG 1 cut(s) 524
SmiMI CAYNNNNRTG 2 cut(s) 300, 306
SmlI CTYRAG 1 cut(s) 845
SmoI CTYRAG 1 cut(s) 845
Sse9I AATT 3 cut(s) 101, 571, 649
SseBI AGGCCT 1 cut(s) 616
StuI AGGCCT 1 cut(s) 616
StyD4I CCNGG 4 cut(s) 459, 521, 522, 865
StyI CCWWGG 1 cut(s) 919
TaaI ACNGT 6 cut(s) 308, 326, 416, 550, 725, 958
TaiI ACGT 3 cut(s) 27, 126, 267
TaqI TCGA 4 cut(s) 14, 272, 320, 575
TaqII GACCGA 1 cut(s) 216
TasI AATT 3 cut(s) 101, 571, 649
TauI GCSGC 5 cut(s) 132, 195, 207, 360, 497
TfiI GAWTC 5 cut(s) 11, 317, 365, 810, 841
TscAI CASTG 5 cut(s) 116, 143, 313, 590, 730
TseI GCWGC 9 cut(s) 184, 283, 390, 399, 402, 405, 456, 661, 870
TspDTI ATGAA 1 cut(s) 777
TspGWI ACGGA 2 cut(s) 318, 699
TspMI CCCGGG 1 cut(s) 522
TspRI CASTG 5 cut(s) 116, 143, 313, 590, 730
VpaK11BI GGWCC 1 cut(s) 228
XapI RAATTY 1 cut(s) 571
XmaI CCCGGG 1 cut(s) 522
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.