AT3G48120

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
3
OG0011067
Physical Location & Seq
Forward (+)
17772057 .. 17774739
2683 bp
Loading structure...
UTR
Exon/CDS
Intron
AT3G48120.2

Sequence Viewer

Length: 987 bp
ATGGAGGAAGAAAAAGCGGCAGCTTACTACGACGAGCTCACGCGTAAAGGAGAAGGAGCTGCTCGCTTCAAGCAAGGTCTCGGCTTCTCCACCGGAGCCAACGCTGTTCCGGAGAGAGGATCGGCGATCGCATCGTCGTCTTCGTTTCTCAACCAATTCGTCAAGGCTTCTAACCATACTAAATCCACTGATAACAAGGATTCCGAGATCCGGTCCATCAGAGATAAATTGAAGAAGAAACCTGAAGATCCTAGGGTGCCGGAGAGGAGCTATAGAGAGTCGAGTGAACGGCGTCGTTATCGGAGTAGAGAGAGGGATGAGAGAGATAAAAGCCATAGAAGGAGAAGCAGGAGTTCAGAGAGACGTAGTAGTTATGTGGATAGAGAGAGACGGAGAAGCAGGAGCAGGAGTGCAGAGAGGCGTAATAGGTACGGGGATAGAGAGAGCCGGAGGAGGAGTAACCGAAGCAGAAGTTTGTCGCCGAGGAGAGAGCGGAGGAGCAGAGAAGATGTTAAGGAGAAGAAGCCTGATTACTCGCGGTTAATCAAAGGCTACGATGAGATGTCAGCTGCTGAAAAAGTGAAAGCCAAGATGAAGCTTCAGCTTGATGAAACGGCTGAGAAAGATACCAGTAAGGGTGCAGGATGGGAAAGATTTGAATTCGACAAAGAGGCCCCAGTTGATGATGAGGAACTAGAAGAAGGTGCTGATGATGATGCTGCCTTGGTCAAGCGCATGGGACAAAGTTATAGGTTTTCCGCCATCGAGGCAAAAAGGGAAGAGCAGTTGAAAGCCGCCCACGATGAGGCCATGTTTGGAGTACCCACAGGCCAAACTCCTACCGAGAACACCGGCGATGATGTTACAGAGATAACTAATGTAAAGGACGATGAAGGAGAAAGCAACAGTGGCGCGATAAGTCTTCTAAGTGAAAAGGTGCTTGCAAAACAGCAAGGATCTTGGCGTGACAGAGCTCGCAAGTCATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

328

Amino Acids

37.84

Weight (kDa)

9.6

Isoelectric Point (pI)

74.93

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0011067)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G48120 AT3G48120
fragaria_vesca FvH4_5g16290
malus_domestica MD06G1182300.v1.1 MD14G1188300.v1.1
prunus_persica Prupe.5G180400_v2.0.a1
pyrus_communis pycom06g16120
rosa_chinensis RchiOBHm_Chr7g0179841
rosa_laevigata RLG00000005319
rosa_multiflora Rmu_sc0001754.1_g000002 Rmu_sc0004156.1_g000013 Rmu_sc0035735.1_g000001
rosa_roxburghii Rroxscaffold_3G00273410
rosa_rugosa Rorug06G0428800
rosa_samantha Rh7AG028500 Rh7BG027500 Rh7BG027600 Rh7CG029400 Rh7DG028800
rosa_wichuraiana Rw7G002280

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 256
AccBSI CCGCTC 1 cut(s) 493
AccII CGCG 3 cut(s) 43, 538, 914
AccIII TCCGGA 1 cut(s) 109
AciI CCGC 5 cut(s) 17, 493, 538, 759, 795
AclWI GGATC 4 cut(s) 127, 202, 242, 964
AcsI RAATTY 1 cut(s) 659
AcuI CTGAAG 2 cut(s) 264, 584
AcyI GRCGYC 1 cut(s) 292
AfaI GTAC 2 cut(s) 431, 822
AfiI CCNNNNNNNGG 3 cut(s) 116, 210, 805
AflIII ACRYGT 1 cut(s) 41
AgsI TTSAA 4 cut(s) 70, 232, 659, 790
AluBI AGCT 8 cut(s) 23, 37, 59, 270, 569, 598, 604, 974
AluI AGCT 8 cut(s) 23, 37, 59, 270, 569, 598, 604, 974
Alw21I GWGCWC 2 cut(s) 39, 976
Alw26I GTCTC 3 cut(s) 83, 355, 382
AlwI GGATC 4 cut(s) 127, 202, 242, 964
AlwNI CAGNNNCTG 1 cut(s) 572
Aor13HI TCCGGA 1 cut(s) 109
AoxI GGCC 3 cut(s) 672, 807, 829
ApeKI GCWGC 4 cut(s) 20, 59, 569, 719
ApoI RAATTY 1 cut(s) 659
AsiSI GCGATCGC 1 cut(s) 129
AspA2I CCTAGG 1 cut(s) 251
AspLEI GCGC 2 cut(s) 735, 914
AspS9I GGNCC 2 cut(s) 213, 673
AvaII GGWCC 1 cut(s) 213
AvrII CCTAGG 1 cut(s) 251
BanI GGYRCC 1 cut(s) 256
BanII GRGCYC 2 cut(s) 39, 976
BarI GAAGNNNNNNTAC 2 cut(s) 515, 547
BbsI GAAGAC 2 cut(s) 132, 914
Bbv12I GWGCWC 2 cut(s) 39, 976
BbvI GCAGC 4 cut(s) 32, 46, 556, 706
BccI CCATC 3 cut(s) 224, 639, 770
BceAI ACGGC 2 cut(s) 305, 630
BcoDI GTCTC 3 cut(s) 83, 355, 382
BfaI CTAG 2 cut(s) 252, 695
BfmI CTRYAG 1 cut(s) 271
BglI GCCNNNNNGGC 1 cut(s) 767
BisI GCNGC 6 cut(s) 18, 21, 60, 570, 720, 795
BlnI CCTAGG 1 cut(s) 251
BlsI GCNGC 6 cut(s) 19, 22, 61, 571, 721, 796
Bme18I GGWCC 1 cut(s) 213
BmgT120I GGNCC 2 cut(s) 213, 673
BmiI GGNNCC 3 cut(s) 97, 258, 675
BmrI ACTGGG 1 cut(s) 671
BmsI GCATC 2 cut(s) 140, 706
BmuI ACTGGG 1 cut(s) 671
BpiI GAAGAC 2 cut(s) 132, 914
BsaHI GRCGYC 1 cut(s) 292
BsaI GGTCTC 1 cut(s) 83
BsaJI CCNNGG 3 cut(s) 251, 482, 723
BsaWI WCCGGW 3 cut(s) 92, 109, 210
BsaXI ACNNNNNCTCC 4 cut(s) 394, 424, 442, 472
Bsc4I CCNNNNNNNGG 3 cut(s) 116, 210, 805
Bse118I RCCGGY 1 cut(s) 851
Bse1I ACTGG 2 cut(s) 630, 677
BseAI TCCGGA 1 cut(s) 109
BseDI CCNNGG 3 cut(s) 251, 482, 723
BseGI GGATG 2 cut(s) 322, 650
BseLI CCNNNNNNNGG 3 cut(s) 116, 210, 805
BseMII CTCAG 1 cut(s) 609
BseNI ACTGG 2 cut(s) 630, 677
BseRI GAGGAG 5 cut(s) 280, 466, 469, 499, 511
BseXI GCAGC 4 cut(s) 32, 46, 556, 706
BsgI GTGCAG 2 cut(s) 432, 660
Bsh1236I CGCG 3 cut(s) 43, 538, 914
Bsh1285I CGRYCG 1 cut(s) 129
BshFI GGCC 3 cut(s) 674, 809, 831
BshNI GGYRCC 1 cut(s) 256
BsiEI CGRYCG 1 cut(s) 129
BsiHKAI GWGCWC 2 cut(s) 39, 976
BsiSI CCGG 6 cut(s) 93, 110, 211, 260, 448, 852
BslFI GGGAC 1 cut(s) 753
BslI CCNNNNNNNGG 3 cut(s) 116, 210, 805
BsmAI GTCTC 3 cut(s) 83, 355, 382
BsmBI CGTCTC 2 cut(s) 355, 382
BsmFI GGGAC 1 cut(s) 753
BsnI GGCC 3 cut(s) 674, 809, 831
Bso31I GGTCTC 1 cut(s) 83
Bsp1286I GDGCHC 2 cut(s) 39, 976
Bsp13I TCCGGA 1 cut(s) 109
Bsp143I GATC 5 cut(s) 119, 126, 207, 247, 956
BspACI CCGC 5 cut(s) 17, 493, 538, 759, 795
BspANI GGCC 3 cut(s) 674, 809, 831
BspCNI CTCAG 1 cut(s) 610
BspEI TCCGGA 1 cut(s) 109
BspFNI CGCG 3 cut(s) 43, 538, 914
BspHI TCATGA 1 cut(s) 983
BspLI GGNNCC 3 cut(s) 97, 258, 675
BspPI GGATC 4 cut(s) 127, 202, 242, 964
BspQI GCTCTTC 1 cut(s) 774
BspT107I GGYRCC 1 cut(s) 256
BspTNI GGTCTC 1 cut(s) 83
BsrBI CCGCTC 1 cut(s) 493
BsrFI RCCGGY 1 cut(s) 851
BsrI ACTGG 2 cut(s) 630, 677
BssAI RCCGGY 1 cut(s) 851
BssECI CCNNGG 3 cut(s) 251, 482, 723
BssMI GATC 5 cut(s) 119, 126, 207, 247, 956
BssNI GRCGYC 1 cut(s) 292
BssT1I CCWWGG 2 cut(s) 251, 723
Bst4CI ACNGT 1 cut(s) 908
Bst6I CTCTTC 1 cut(s) 774
BstACI GRCGYC 1 cut(s) 292
BstC8I GCNNGC 3 cut(s) 64, 942, 976
BstDEI CTNAG 2 cut(s) 618, 926
BstF5I GGATG 2 cut(s) 322, 650
BstFNI CGCG 3 cut(s) 43, 538, 914
BstHHI GCGC 2 cut(s) 735, 914
BstKTI GATC 5 cut(s) 122, 129, 210, 250, 959
BstMAI GTCTC 3 cut(s) 83, 355, 382
BstMBI GATC 5 cut(s) 119, 126, 207, 247, 956
BstMCI CGRYCG 1 cut(s) 129
BstMWI GCNNNNNNNGC 2 cut(s) 767, 909
BstSFI CTRYAG 1 cut(s) 271
BstUI CGCG 3 cut(s) 43, 538, 914
BstV1I GCAGC 4 cut(s) 32, 46, 556, 706
BstV2I GAAGAC 2 cut(s) 132, 914
BstX2I RGATCY 3 cut(s) 207, 247, 956
BstYI RGATCY 3 cut(s) 207, 247, 956
BsuRI GGCC 3 cut(s) 674, 809, 831
BtgZI GCGATG 1 cut(s) 870
BtsCI GGATG 2 cut(s) 322, 650
BtsIMutI CAGTG 2 cut(s) 186, 913
Cac8I GCNNGC 3 cut(s) 64, 942, 976
CaiI CAGNNNCTG 1 cut(s) 572
CciI TCATGA 1 cut(s) 983
CfoI GCGC 2 cut(s) 735, 914
Cfr10I RCCGGY 1 cut(s) 851
Cfr13I GGNCC 2 cut(s) 213, 673
CseI GACGC 1 cut(s) 281
Csp6I GTAC 2 cut(s) 430, 821
CviAII CATG 3 cut(s) 736, 811, 984
CviQI GTAC 2 cut(s) 430, 821
DdeI CTNAG 2 cut(s) 618, 926
DpnI GATC 5 cut(s) 121, 128, 209, 249, 958
DpnII GATC 5 cut(s) 119, 126, 207, 247, 956
Eam1104I CTCTTC 1 cut(s) 774
EarI CTCTTC 1 cut(s) 774
EciI GGCGGA 1 cut(s) 748
Ecl136II GAGCTC 2 cut(s) 37, 974
Eco130I CCWWGG 2 cut(s) 251, 723
Eco24I GRGCYC 2 cut(s) 39, 976
Eco31I GGTCTC 1 cut(s) 83
Eco47I GGWCC 1 cut(s) 213
Eco53kI GAGCTC 2 cut(s) 37, 974
Eco57I CTGAAG 2 cut(s) 264, 584
EcoICRI GAGCTC 2 cut(s) 37, 974
EcoO109I RGGNCCY 1 cut(s) 673
EcoRI GAATTC 1 cut(s) 659
EcoT14I CCWWGG 2 cut(s) 251, 723
EcoT38I GRGCYC 2 cut(s) 39, 976
ErhI CCWWGG 2 cut(s) 251, 723
Esp3I CGTCTC 2 cut(s) 355, 382
FaeI CATG 3 cut(s) 739, 814, 987
FaiI YATR 8 cut(s) 177, 273, 336, 375, 737, 750, 812, 985
FaqI GGGAC 1 cut(s) 753
FatI CATG 3 cut(s) 735, 810, 983
Fnu4HI GCNGC 6 cut(s) 18, 21, 60, 570, 720, 795
FokI GGATG 2 cut(s) 329, 657
FriOI GRGCYC 2 cut(s) 39, 976
Fsp4HI GCNGC 6 cut(s) 18, 21, 60, 570, 720, 795
FspBI CTAG 2 cut(s) 252, 695
GlaI GCGC 2 cut(s) 734, 913
GluI GCNGC 6 cut(s) 18, 21, 60, 570, 720, 795
HaeIII GGCC 3 cut(s) 674, 809, 831
HapII CCGG 6 cut(s) 93, 110, 211, 260, 448, 852
HgaI GACGC 1 cut(s) 281
HhaI GCGC 2 cut(s) 735, 914
Hin1I GRCGYC 1 cut(s) 292
Hin1II CATG 3 cut(s) 739, 814, 987
Hin6I GCGC 2 cut(s) 733, 912
HinP1I GCGC 2 cut(s) 733, 912
HindIII AAGCTT 1 cut(s) 596
HinfI GANTC 2 cut(s) 200, 278
HpaII CCGG 6 cut(s) 93, 110, 211, 260, 448, 852
Hpy166II GTNNAC 1 cut(s) 287
Hpy188I TCNGA 4 cut(s) 205, 221, 303, 358
Hpy188III TCNNGA 2 cut(s) 110, 984
Hpy8I GTNNAC 1 cut(s) 287
Hpy99I CGWCG 3 cut(s) 35, 139, 297
HpyAV CCTTC 4 cut(s) 47, 333, 695, 887
HpyCH4III ACNGT 1 cut(s) 908
HpyCH4IV ACGT 1 cut(s) 364
HpyCH4V TGCA 3 cut(s) 413, 641, 944
HpyF10VI GCNNNNNNNGC 2 cut(s) 767, 909
HpyF3I CTNAG 2 cut(s) 618, 926
HpySE526I ACGT 1 cut(s) 364
Hsp92I GRCGYC 1 cut(s) 292
Hsp92II CATG 3 cut(s) 739, 814, 987
HspAI GCGC 2 cut(s) 733, 912
Kpn2I TCCGGA 1 cut(s) 109
Kzo9I GATC 5 cut(s) 119, 126, 207, 247, 956
LguI GCTCTTC 1 cut(s) 774
LmnI GCTCC 5 cut(s) 56, 95, 267, 402, 498
Lsp1109I GCAGC 4 cut(s) 32, 46, 556, 706
LweI GCATC 2 cut(s) 140, 706
MaeI CTAG 2 cut(s) 252, 695
MaeII ACGT 1 cut(s) 364
MaeIII GTNAC 3 cut(s) 458, 862, 965
MalI GATC 5 cut(s) 121, 128, 209, 249, 958
MbiI CCGCTC 1 cut(s) 493
MboI GATC 5 cut(s) 119, 126, 207, 247, 956
MflI RGATCY 3 cut(s) 207, 247, 956
MhlI GDGCHC 2 cut(s) 39, 976
MluCI AATT 3 cut(s) 155, 227, 659
MluI ACGCGT 1 cut(s) 41
MlyI GAGTC 1 cut(s) 287
MroI TCCGGA 1 cut(s) 109
MseI TTAA 2 cut(s) 513, 542
MspA1I CMGCKG 1 cut(s) 569
MspI CCGG 6 cut(s) 93, 110, 211, 260, 448, 852
MvnI CGCG 3 cut(s) 43, 538, 914
MwoI GCNNNNNNNGC 2 cut(s) 767, 909
NdeII GATC 5 cut(s) 119, 126, 207, 247, 956
NlaIII CATG 3 cut(s) 739, 814, 987
NlaIV GGNNCC 3 cut(s) 97, 258, 675
NmeAIII GCCGAG 2 cut(s) 60, 507
NmuCI GTSAC 1 cut(s) 965
PagI TCATGA 1 cut(s) 983
PciSI GCTCTTC 1 cut(s) 774
PcsI WCGNNNNNNNCGW 1 cut(s) 140
PfeI GAWTC 1 cut(s) 200
PkrI GCNGC 6 cut(s) 19, 22, 61, 571, 721, 796
Ple19I CGATCG 1 cut(s) 129
PleI GAGTC 1 cut(s) 286
PpsI GAGTC 1 cut(s) 286
Psp124BI GAGCTC 2 cut(s) 39, 976
PspN4I GGNNCC 3 cut(s) 97, 258, 675
PspPI GGNCC 2 cut(s) 213, 673
PstNI CAGNNNCTG 1 cut(s) 572
PsuI RGATCY 3 cut(s) 207, 247, 956
PvuI CGATCG 1 cut(s) 129
PvuII CAGCTG 1 cut(s) 569
RgaI GCGATCGC 1 cut(s) 129
RsaI GTAC 2 cut(s) 431, 822
RsaNI GTAC 2 cut(s) 430, 821
SacI GAGCTC 2 cut(s) 39, 976
SapI GCTCTTC 1 cut(s) 774
SaqAI TTAA 2 cut(s) 513, 542
SatI GCNGC 6 cut(s) 18, 21, 60, 570, 720, 795
Sau3AI GATC 5 cut(s) 119, 126, 207, 247, 956
Sau96I GGNCC 2 cut(s) 213, 673
SchI GAGTC 1 cut(s) 287
SduI GDGCHC 2 cut(s) 39, 976
SfaAI GCGATCGC 1 cut(s) 129
SfaNI GCATC 2 cut(s) 140, 706
SfcI CTRYAG 1 cut(s) 271
SgfI GCGATCGC 1 cut(s) 129
SgrAI CRCCGGYG 1 cut(s) 851
SinI GGWCC 1 cut(s) 213
Sse9I AATT 3 cut(s) 155, 227, 659
SsiI CCGC 5 cut(s) 17, 493, 538, 759, 795
SspMI CTAG 2 cut(s) 252, 695
SstI GAGCTC 2 cut(s) 39, 976
StyI CCWWGG 2 cut(s) 251, 723
TaaI ACNGT 1 cut(s) 908
TaiI ACGT 1 cut(s) 367
TaqI TCGA 3 cut(s) 281, 663, 765
TasI AATT 3 cut(s) 155, 227, 659
TauI GCSGC 2 cut(s) 20, 797
TfiI GAWTC 1 cut(s) 200
Tru1I TTAA 2 cut(s) 513, 542
Tru9I TTAA 2 cut(s) 513, 542
TscAI CASTG 2 cut(s) 193, 913
TseFI GTSAC 1 cut(s) 965
TseI GCWGC 4 cut(s) 20, 59, 569, 719
Tsp45I GTSAC 1 cut(s) 965
TspDTI ATGAA 3 cut(s) 608, 624, 906
TspGWI ACGGA 1 cut(s) 406
TspRI CASTG 2 cut(s) 193, 913
VpaK11BI GGWCC 1 cut(s) 213
XapI RAATTY 1 cut(s) 659
XmaJI CCTAGG 1 cut(s) 251
XspI CTAG 2 cut(s) 252, 695
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.