FvH4_5g16290

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb5
OG0011067
Physical Location & Seq
Forward (+)
9284784 .. 9287778
2995 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_5g16290.t1

Sequence Viewer

Length: 1047 bp
ATGGAGGAAGCGAAAGCGGCGGCGTACTACGAAGACCTAACCCGGCGCGGCGAGGGCGCCGCCAGGTTCAAACAAGGCCTCGGCTTCTCTTCGGCCAAGTCCGACTCCGAAAATGCCCCCGCGCGCGGCTCGGCGCTGGCGTATAGTTCCTCGTCTTCGTTCATGAGCAAATTCGTCAAGGCCTCCAGCCCTAGCAAGACGTCGGAGCTCGAAAAGCAGGCGCAGATTCAGTCGATTCAGAGCAAGCTGAAGAGGAAGAAGCCGGAGGAGCTGGCCGGAGAGGAGGAGAAGCGGCGGCCTAGGGTTTCGGAGAGGGATAGGGATTCGAGGAAGCGGAGTAGAAGCAGAGAGAGGCATTCGAGGCATCGGAGTAGGAGCAGAGAGAGACACAGTGATAGAGATAGAGAGAGAAGGAGGAGGAGAAGGAGCAGGTCTGGAAGTGAATCTGACGACGGAGGCAGGAGACGAAGGAGTCGGTCTCCTCGGAATCGGAGAAATGAGCGGCGGAGGAGCCGGAGCCGGAGCTCGTCGCCACCTAGGGAGAGGGGTTTGGAGAAGAGCAGAGGTAAATTGGAGAAGGAGAGGAGTGGTGGTCATGACTATCAGAAATTGATTCAAGGCTATGACAAAATGTCTGCAGCCGAGAGAGTAAAAGCAAAGATGAAACTCCAACTTGCTGAAACTGCTGAGAAGGACACAACCAAAGGCATGGATGGTTGGGAAAGATTTGATTTTGATAAACATGCACCACTTGACGATGATGAAATTGAAGTTGCTGAAGACGATGCAGCACTCGTCAATCACATTGGCAAAAGCTTTCGGTTTTCAGCATATGAGACAAAAAGGGAGGAGCGGATCAAAGCTGCTCATGATGAGGCAATGTTTGGTGCATCAGATAATCGACCATCCATTATGATAAACGGTGAGGTTGAGGCAGAGAATGATAGTAAGGACTGCAAAGAAAGTGAGCCTCCAAGCCTCTTAAGCGAGAAGGTACTTGCTAAAAAACAAGGTTCGTGGCGTGATCGTATACGCCACAACAATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

349

Amino Acids

40.13

Weight (kDa)

10.11

Isoelectric Point (pI)

93.05

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0011067)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G48120 AT3G48120
fragaria_vesca FvH4_5g16290
malus_domestica MD06G1182300.v1.1 MD14G1188300.v1.1
prunus_persica Prupe.5G180400_v2.0.a1
pyrus_communis pycom06g16120
rosa_chinensis RchiOBHm_Chr7g0179841
rosa_laevigata RLG00000005319
rosa_multiflora Rmu_sc0001754.1_g000002 Rmu_sc0004156.1_g000013 Rmu_sc0035735.1_g000001
rosa_roxburghii Rroxscaffold_3G00273410
rosa_rugosa Rorug06G0428800
rosa_samantha Rh7AG028500 Rh7BG027500 Rh7BG027600 Rh7CG029400 Rh7DG028800
rosa_wichuraiana Rw7G002280

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 471
AatII GACGTC 1 cut(s) 203
Acc36I ACCTGC 1 cut(s) 420
AccB1I GGYRCC 1 cut(s) 56
AccBSI CCGCTC 2 cut(s) 502, 853
AccI GTMKAC 1 cut(s) 1030
AccII CGCG 4 cut(s) 48, 122, 124, 126
AclWI GGATC 1 cut(s) 863
AcoI YGGCCR 2 cut(s) 93, 273
AcsI RAATTY 1 cut(s) 170
AcuI CTGAAG 2 cut(s) 269, 798
AcyI GRCGYC 2 cut(s) 57, 200
AfaI GTAC 2 cut(s) 26, 996
AfiI CCNNNNNNNGG 1 cut(s) 125
AflII CTTAAG 1 cut(s) 982
AgsI TTSAA 3 cut(s) 70, 617, 770
AhdI GACNNNNNGTC 1 cut(s) 631
AjnI CCWGG 1 cut(s) 62
AluBI AGCT 6 cut(s) 208, 247, 271, 525, 816, 863
AluI AGCT 6 cut(s) 208, 247, 271, 525, 816, 863
Alw21I GWGCWC 2 cut(s) 210, 527
Alw26I GTCTC 4 cut(s) 379, 457, 483, 830
AlwI GGATC 1 cut(s) 863
AoxI GGCC 5 cut(s) 76, 93, 180, 273, 296
ApeKI GCWGC 3 cut(s) 638, 788, 863
ApoI RAATTY 1 cut(s) 170
AspA2I CCTAGG 2 cut(s) 299, 536
AspLEI GCGC 6 cut(s) 48, 59, 124, 126, 136, 223
AsuC2I CCSGG 1 cut(s) 43
AsuHPI GGTGA 1 cut(s) 935
AvrII CCTAGG 2 cut(s) 299, 536
BanI GGYRCC 1 cut(s) 56
BanII GRGCYC 2 cut(s) 210, 527
BbsI GAAGAC 3 cut(s) 39, 147, 786
Bbv12I GWGCWC 2 cut(s) 210, 527
BbvI GCAGC 3 cut(s) 650, 800, 850
BccI CCATC 2 cut(s) 707, 913
BciT130I CCWGG 1 cut(s) 64
BcnI CCSGG 1 cut(s) 43
BcoDI GTCTC 4 cut(s) 379, 457, 483, 830
BfaI CTAG 3 cut(s) 192, 300, 537
BfmI CTRYAG 1 cut(s) 636
BfoI RGCGCY 2 cut(s) 60, 137
BfrI CTTAAG 1 cut(s) 982
BfuAI ACCTGC 1 cut(s) 420
BlnI CCTAGG 2 cut(s) 299, 536
Bme1390I CCNGG 2 cut(s) 43, 64
BmeRI GACNNNNNGTC 1 cut(s) 631
BmiI GGNNCC 3 cut(s) 58, 512, 518
BmrFI CCNGG 2 cut(s) 43, 64
BmsI GCATC 3 cut(s) 373, 775, 899
BpiI GAAGAC 3 cut(s) 39, 147, 786
BplI GAGNNNNNCTC 2 cut(s) 463, 495
BpmI CTGGAG 1 cut(s) 169
BpuMI CCSGG 1 cut(s) 43
BsaHI GRCGYC 2 cut(s) 57, 200
BsaI GGTCTC 1 cut(s) 483
BsaJI CCNNGG 4 cut(s) 79, 299, 482, 536
BsaXI ACNNNNNCTCC 2 cut(s) 577, 607
Bsc4I CCNNNNNNNGG 1 cut(s) 125
Bse3DI GCAATG 1 cut(s) 885
BseBI CCWGG 1 cut(s) 64
BseDI CCNNGG 4 cut(s) 79, 299, 482, 536
BseGI GGATG 2 cut(s) 718, 905
BseLI CCNNNNNNNGG 1 cut(s) 125
BseMI GCAATG 1 cut(s) 885
BseMII CTCAG 1 cut(s) 678
BsePI GCGCGC 1 cut(s) 122
BseRI GAGGAG 9 cut(s) 281, 296, 299, 430, 433, 471, 523, 598, 863
BseXI GCAGC 3 cut(s) 650, 800, 850
Bsh1236I CGCG 4 cut(s) 48, 122, 124, 126
BshFI GGCC 5 cut(s) 78, 95, 182, 275, 298
BshNI GGYRCC 1 cut(s) 56
BsiHKAI GWGCWC 2 cut(s) 210, 527
BsiSI CCGG 5 cut(s) 43, 263, 276, 514, 520
BslI CCNNNNNNNGG 1 cut(s) 125
BsmAI GTCTC 4 cut(s) 379, 457, 483, 830
BsmBI CGTCTC 1 cut(s) 457
BsmI GAATGC 1 cut(s) 355
BsnI GGCC 5 cut(s) 78, 95, 182, 275, 298
Bso31I GGTCTC 1 cut(s) 483
Bsp1286I GDGCHC 2 cut(s) 210, 527
Bsp143I GATC 2 cut(s) 855, 1024
BspANI GGCC 5 cut(s) 78, 95, 182, 275, 298
BspCNI CTCAG 1 cut(s) 679
BspFNI CGCG 4 cut(s) 48, 122, 124, 126
BspHI TCATGA 3 cut(s) 162, 595, 868
BspLI GGNNCC 3 cut(s) 58, 512, 518
BspMAI CTGCAG 1 cut(s) 640
BspMI ACCTGC 1 cut(s) 420
BspPI GGATC 1 cut(s) 863
BspQI GCTCTTC 1 cut(s) 551
BspT107I GGYRCC 1 cut(s) 56
BspTI CTTAAG 1 cut(s) 982
BspTNI GGTCTC 1 cut(s) 483
BsrBI CCGCTC 2 cut(s) 502, 853
BsrDI GCAATG 1 cut(s) 885
BssECI CCNNGG 4 cut(s) 79, 299, 482, 536
BssHII GCGCGC 1 cut(s) 122
BssMI GATC 2 cut(s) 855, 1024
BssNAI GTATAC 1 cut(s) 1031
BssNI GRCGYC 2 cut(s) 57, 200
BssT1I CCWWGG 2 cut(s) 299, 536
Bst1107I GTATAC 1 cut(s) 1031
Bst2UI CCWGG 1 cut(s) 64
Bst4CI ACNGT 2 cut(s) 392, 923
Bst6I CTCTTC 3 cut(s) 94, 245, 551
BstACI GRCGYC 2 cut(s) 57, 200
BstAFI CTTAAG 1 cut(s) 982
BstC8I GCNNGC 5 cut(s) 124, 138, 219, 245, 273
BstDEI CTNAG 1 cut(s) 687
BstF5I GGATG 2 cut(s) 718, 905
BstFNI CGCG 4 cut(s) 48, 122, 124, 126
BstH2I RGCGCY 2 cut(s) 60, 137
BstHHI GCGC 6 cut(s) 48, 59, 124, 126, 136, 223
BstKTI GATC 2 cut(s) 858, 1027
BstMAI GTCTC 4 cut(s) 379, 457, 483, 830
BstMBI GATC 2 cut(s) 855, 1024
BstMWI GCNNNNNNNGC 7 cut(s) 17, 54, 214, 268, 361, 683, 984
BstNI CCWGG 1 cut(s) 64
BstNSI RCATGY 1 cut(s) 746
BstSCI CCNGG 2 cut(s) 41, 62
BstSFI CTRYAG 1 cut(s) 636
BstUI CGCG 4 cut(s) 48, 122, 124, 126
BstV1I GCAGC 3 cut(s) 650, 800, 850
BstV2I GAAGAC 3 cut(s) 39, 147, 786
BstXI CCANNNNNNTGG 1 cut(s) 709
BstZ17I GTATAC 1 cut(s) 1031
BsuRI GGCC 5 cut(s) 78, 95, 182, 275, 298
BtsCI GGATG 2 cut(s) 718, 905
BtsIMutI CAGTG 1 cut(s) 397
BveI ACCTGC 1 cut(s) 420
Cac8I GCNNGC 5 cut(s) 124, 138, 219, 245, 273
CciI TCATGA 3 cut(s) 162, 595, 868
CfoI GCGC 6 cut(s) 48, 59, 124, 126, 136, 223
Csp6I GTAC 2 cut(s) 25, 995
CspCI CAANNNNNGTGG 3 cut(s) 998, 1025, 1033
CviAII CATG 5 cut(s) 163, 596, 709, 743, 869
CviQI GTAC 2 cut(s) 25, 995
DdeI CTNAG 1 cut(s) 687
DinI GGCGCC 1 cut(s) 58
DpnI GATC 2 cut(s) 857, 1026
DpnII GATC 2 cut(s) 855, 1024
DrdI GACNNNNNNGTC 1 cut(s) 471
DriI GACNNNNNGTC 1 cut(s) 631
DseDI GACNNNNNNGTC 1 cut(s) 471
EaeI YGGCCR 2 cut(s) 93, 273
Eam1104I CTCTTC 3 cut(s) 94, 245, 551
Eam1105I GACNNNNNGTC 1 cut(s) 631
EarI CTCTTC 3 cut(s) 94, 245, 551
EciI GGCGGA 1 cut(s) 520
Ecl136II GAGCTC 2 cut(s) 208, 525
Eco130I CCWWGG 2 cut(s) 299, 536
Eco147I AGGCCT 2 cut(s) 78, 182
Eco24I GRGCYC 2 cut(s) 210, 527
Eco31I GGTCTC 1 cut(s) 483
Eco53kI GAGCTC 2 cut(s) 208, 525
Eco57I CTGAAG 2 cut(s) 269, 798
EcoICRI GAGCTC 2 cut(s) 208, 525
EcoRII CCWGG 1 cut(s) 62
EcoT14I CCWWGG 2 cut(s) 299, 536
EcoT38I GRGCYC 2 cut(s) 210, 527
EgeI GGCGCC 1 cut(s) 58
EheI GGCGCC 1 cut(s) 58
ErhI CCWWGG 2 cut(s) 299, 536
Esp3I CGTCTC 1 cut(s) 457
FaeI CATG 5 cut(s) 166, 599, 712, 746, 872
FatI CATG 5 cut(s) 162, 595, 708, 742, 868
FauI CCCGC 1 cut(s) 127
FauNDI CATATG 1 cut(s) 832
FblI GTMKAC 1 cut(s) 1030
FokI GGATG 2 cut(s) 725, 892
FriOI GRGCYC 2 cut(s) 210, 527
FspBI CTAG 3 cut(s) 192, 300, 537
GlaI GCGC 6 cut(s) 47, 58, 123, 125, 135, 222
GsuI CTGGAG 1 cut(s) 169
HaeII RGCGCY 2 cut(s) 60, 137
HaeIII GGCC 5 cut(s) 78, 95, 182, 275, 298
HapII CCGG 5 cut(s) 43, 263, 276, 514, 520
HhaI GCGC 6 cut(s) 48, 59, 124, 126, 136, 223
Hin1I GRCGYC 2 cut(s) 57, 200
Hin1II CATG 5 cut(s) 166, 599, 712, 746, 872
Hin6I GCGC 6 cut(s) 46, 57, 122, 124, 134, 221
HinP1I GCGC 6 cut(s) 46, 57, 122, 124, 134, 221
HindIII AAGCTT 1 cut(s) 814
HinfI GANTC 8 cut(s) 104, 226, 235, 323, 443, 472, 487, 613
HpaII CCGG 5 cut(s) 43, 263, 276, 514, 520
HphI GGTGA 1 cut(s) 935
Hpy166II GTNNAC 1 cut(s) 1031
Hpy188III TCNNGA 4 cut(s) 163, 435, 596, 869
Hpy8I GTNNAC 1 cut(s) 1031
Hpy99I CGWCG 3 cut(s) 205, 455, 532
HpyAV CCTTC 6 cut(s) 405, 417, 462, 571, 685, 985
HpyCH4III ACNGT 2 cut(s) 392, 923
HpyCH4IV ACGT 1 cut(s) 200
HpyCH4V TGCA 5 cut(s) 638, 746, 788, 890, 957
HpyF10VI GCNNNNNNNGC 7 cut(s) 17, 54, 214, 268, 361, 683, 984
HpyF3I CTNAG 1 cut(s) 687
HpySE526I ACGT 1 cut(s) 200
Hsp92I GRCGYC 2 cut(s) 57, 200
Hsp92II CATG 5 cut(s) 166, 599, 712, 746, 872
HspAI GCGC 6 cut(s) 46, 57, 122, 124, 134, 221
KasI GGCGCC 1 cut(s) 56
Kzo9I GATC 2 cut(s) 855, 1024
LguI GCTCTTC 1 cut(s) 551
LmnI GCTCC 8 cut(s) 205, 268, 375, 426, 510, 516, 522, 850
Lsp1109I GCAGC 3 cut(s) 650, 800, 850
LweI GCATC 3 cut(s) 373, 775, 899
MaeI CTAG 3 cut(s) 192, 300, 537
MaeII ACGT 1 cut(s) 200
MalI GATC 2 cut(s) 857, 1026
MauBI CGCGCGCG 1 cut(s) 122
MbiI CCGCTC 2 cut(s) 502, 853
MboI GATC 2 cut(s) 855, 1024
MboII GAAGA 7 cut(s) 44, 81, 147, 262, 268, 568, 791
MfeI CAATTG 1 cut(s) 1042
MhlI GDGCHC 2 cut(s) 210, 527
MluCI AATT 5 cut(s) 170, 569, 608, 765, 1042
Mly113I GGCGCC 1 cut(s) 57
MlyI GAGTC 2 cut(s) 98, 481
MmeI TCCRAC 3 cut(s) 126, 183, 694
MseI TTAA 1 cut(s) 983
MspCI CTTAAG 1 cut(s) 982
MspI CCGG 5 cut(s) 43, 263, 276, 514, 520
MspR9I CCNGG 2 cut(s) 43, 64
MunI CAATTG 1 cut(s) 1042
Mva1269I GAATGC 1 cut(s) 355
MvaI CCWGG 1 cut(s) 64
MvnI CGCG 4 cut(s) 48, 122, 124, 126
MwoI GCNNNNNNNGC 7 cut(s) 17, 54, 214, 268, 361, 683, 984
NarI GGCGCC 1 cut(s) 57
NciI CCSGG 1 cut(s) 43
NdeI CATATG 1 cut(s) 832
NdeII GATC 2 cut(s) 855, 1024
NlaIII CATG 5 cut(s) 166, 599, 712, 746, 872
NlaIV GGNNCC 3 cut(s) 58, 512, 518
NmeAIII GCCGAG 3 cut(s) 60, 110, 667
NspI RCATGY 1 cut(s) 746
PagI TCATGA 3 cut(s) 162, 595, 868
PauI GCGCGC 1 cut(s) 122
PceI AGGCCT 2 cut(s) 78, 182
PciSI GCTCTTC 1 cut(s) 551
PcsI WCGNNNNNNNCGW 1 cut(s) 137
PctI GAATGC 1 cut(s) 355
PfeI GAWTC 6 cut(s) 226, 235, 323, 443, 487, 613
PleI GAGTC 2 cut(s) 98, 480
PluTI GGCGCC 1 cut(s) 60
PpsI GAGTC 2 cut(s) 98, 480
Psp124BI GAGCTC 2 cut(s) 210, 527
Psp6I CCWGG 1 cut(s) 62
PspGI CCWGG 1 cut(s) 62
PspN4I GGNNCC 3 cut(s) 58, 512, 518
PstI CTGCAG 1 cut(s) 640
PteI GCGCGC 1 cut(s) 122
RsaI GTAC 2 cut(s) 26, 996
RsaNI GTAC 2 cut(s) 25, 995
SacI GAGCTC 2 cut(s) 210, 527
SapI GCTCTTC 1 cut(s) 551
SaqAI TTAA 1 cut(s) 983
Sau3AI GATC 2 cut(s) 855, 1024
SchI GAGTC 2 cut(s) 98, 481
ScrFI CCNGG 2 cut(s) 43, 64
SduI GDGCHC 2 cut(s) 210, 527
SfaNI GCATC 3 cut(s) 373, 775, 899
SfcI CTRYAG 1 cut(s) 636
SfoI GGCGCC 1 cut(s) 58
SmlI CTYRAG 1 cut(s) 982
SmoI CTYRAG 1 cut(s) 982
Sse9I AATT 5 cut(s) 170, 569, 608, 765, 1042
SseBI AGGCCT 2 cut(s) 78, 182
SspDI GGCGCC 1 cut(s) 56
SspMI CTAG 3 cut(s) 192, 300, 537
SstI GAGCTC 2 cut(s) 210, 527
StuI AGGCCT 2 cut(s) 78, 182
StyD4I CCNGG 2 cut(s) 41, 62
StyI CCWWGG 2 cut(s) 299, 536
TaaI ACNGT 2 cut(s) 392, 923
TaiI ACGT 1 cut(s) 203
TaqI TCGA 5 cut(s) 210, 233, 326, 359, 901
TaqII GACCGA 1 cut(s) 465
TasI AATT 5 cut(s) 170, 569, 608, 765, 1042
TauI GCSGC 8 cut(s) 20, 23, 51, 62, 129, 295, 298, 505
TfiI GAWTC 6 cut(s) 226, 235, 323, 443, 487, 613
Tru1I TTAA 1 cut(s) 983
Tru9I TTAA 1 cut(s) 983
TscAI CASTG 1 cut(s) 397
TseI GCWGC 3 cut(s) 638, 788, 863
TspDTI ATGAA 3 cut(s) 151, 677, 777
TspGWI ACGGA 1 cut(s) 468
TspRI CASTG 1 cut(s) 397
Vha464I CTTAAG 1 cut(s) 982
XapI RAATTY 1 cut(s) 170
XceI RCATGY 1 cut(s) 746
XmaJI CCTAGG 2 cut(s) 299, 536
XmiI GTMKAC 1 cut(s) 1030
XspI CTAG 3 cut(s) 192, 300, 537
ZraI GACGTC 1 cut(s) 201
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.