Rh7CG029400

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7C
OG0011067
Physical Location & Seq
Reverse (-)
2093725 .. 2101644
7920 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7CG029400.1

Sequence Viewer

Length: 795 bp
ATGGAGGAAGCAAAAGCGGCGGCGTACTACGAAGACCTAACCCGCCGCGGCGAAGGCGCCGCCAGATTCAAACAAGGCCTCGGCTTCTCATCGGCGAAGTCCGATTCCGAAAATGCCCCTGCGCGCGGTTCGGCGGTGGCGTATACTTCCTCGTCTTCCTTCATGAGCAAATTCGTCAAGGCCTCCAGCCCTAGCAAGACGACGGAGGTCGAAAAGCAAGCGCAGATCCAGTCGATCCAGAACAAGCTGAAGAGGAAGAAGCCGGAGGAGCTGGCCGGAGAGGAAGAGAAGCGGCGGCCTAGGGTTTCGGAGAGGGATAAGCGGAGTAGAAGCAGAGAGAGGGAGTCGAGGCGTAGGAGTAGGAGCAGAGAGAGGTATAGAGATAGGGAGAGAAGGAGGAGGAGGAGGAGGAGGAGCAGGTCTGGGAGTGAATCGGACGGAGATAGGAGACGAAGGAGTCGGTCCCCTCGGAATCGGAGAAAGGAACGGCGGAGGAGCCGGAGCTCGTCGCCGCCGAGGGAGAGGGGTTCGGAGAAGAGCAGAGGTAAATTGGAGAAGGAGAGGAGTGGCGGTGGTGCTGACTATTACAAATTGATTCAAGGCTATGACAAAATGTCTGCAGCGGAGAGAGTAAAAGCGAAAATGAAACTCCAACTTGCTGAAACGGCTGAGAAGGACACAACCAAAGGCATGGATGGTTGGGAAAGATTTGAATTCGATAAAGATGCACCACTAGACGATGAGGAGATTGAAGGTAATCAATATAACCATGCTGTGTTGTTTACTAGAAAGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

264

Amino Acids

30.79

Weight (kDa)

10.6

Isoelectric Point (pI)

109.39

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0011067)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G48120 AT3G48120
fragaria_vesca FvH4_5g16290
malus_domestica MD06G1182300.v1.1 MD14G1188300.v1.1
prunus_persica Prupe.5G180400_v2.0.a1
pyrus_communis pycom06g16120
rosa_chinensis RchiOBHm_Chr7g0179841
rosa_laevigata RLG00000005319
rosa_multiflora Rmu_sc0001754.1_g000002 Rmu_sc0004156.1_g000013 Rmu_sc0035735.1_g000001
rosa_roxburghii Rroxscaffold_3G00273410
rosa_rugosa Rorug06G0428800
rosa_samantha Rh7AG028500 Rh7BG027500 Rh7BG027600 Rh7CG029400 Rh7DG028800
rosa_wichuraiana Rw7G002280

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 456
Acc36I ACCTGC 1 cut(s) 408
AccB1I GGYRCC 1 cut(s) 56
AccI GTMKAC 1 cut(s) 143
AccII CGCG 3 cut(s) 48, 124, 126
AclWI GGATC 2 cut(s) 220, 229
AcoI YGGCCR 1 cut(s) 273
AcsI RAATTY 2 cut(s) 170, 713
AcuI CTGAAG 1 cut(s) 269
AcyI GRCGYC 1 cut(s) 57
AfaI GTAC 1 cut(s) 26
AfiI CCNNNNNNNGG 1 cut(s) 125
AgsI TTSAA 4 cut(s) 70, 599, 713, 752
AhdI GACNNNNNGTC 1 cut(s) 613
AluBI AGCT 3 cut(s) 247, 271, 504
AluI AGCT 3 cut(s) 247, 271, 504
Alw21I GWGCWC 1 cut(s) 506
Alw26I GTCTC 1 cut(s) 442
AlwI GGATC 2 cut(s) 220, 229
AoxI GGCC 4 cut(s) 76, 180, 273, 296
ApeKI GCWGC 1 cut(s) 620
ApoI RAATTY 2 cut(s) 170, 713
AspA2I CCTAGG 1 cut(s) 299
AspLEI GCGC 4 cut(s) 59, 124, 126, 223
AspS9I GGNCC 1 cut(s) 462
AvaII GGWCC 1 cut(s) 462
AvrII CCTAGG 1 cut(s) 299
BanI GGYRCC 1 cut(s) 56
BanII GRGCYC 1 cut(s) 506
BbsI GAAGAC 2 cut(s) 39, 147
Bbv12I GWGCWC 1 cut(s) 506
BbvI GCAGC 1 cut(s) 632
BccI CCATC 1 cut(s) 689
BceAI ACGGC 2 cut(s) 503, 681
BcgI CGANNNNNNTGC 2 cut(s) 707, 741
BcoDI GTCTC 1 cut(s) 442
BfaI CTAG 4 cut(s) 192, 300, 734, 786
BfmI CTRYAG 1 cut(s) 618
BfoI RGCGCY 1 cut(s) 60
BfuAI ACCTGC 1 cut(s) 408
BisI GCNGC 9 cut(s) 18, 21, 46, 49, 60, 293, 296, 512, 621
BlnI CCTAGG 1 cut(s) 299
BlsI GCNGC 9 cut(s) 19, 22, 47, 50, 61, 294, 297, 513, 622
Bme18I GGWCC 1 cut(s) 462
BmeRI GACNNNNNGTC 1 cut(s) 613
BmgT120I GGNCC 1 cut(s) 462
BmiI GGNNCC 3 cut(s) 58, 464, 497
BmsI GCATC 1 cut(s) 715
BoxI GACNNNNGTC 1 cut(s) 206
BpiI GAAGAC 2 cut(s) 39, 147
BpmI CTGGAG 1 cut(s) 169
BsaHI GRCGYC 1 cut(s) 57
BsaJI CCNNGG 5 cut(s) 46, 79, 299, 467, 515
BsaXI ACNNNNNCTCC 2 cut(s) 556, 586
Bsc4I CCNNNNNNNGG 1 cut(s) 125
Bse1I ACTGG 1 cut(s) 229
BseDI CCNNGG 5 cut(s) 46, 79, 299, 467, 515
BseGI GGATG 1 cut(s) 700
BseLI CCNNNNNNNGG 1 cut(s) 125
BseMII CTCAG 1 cut(s) 660
BseNI ACTGG 1 cut(s) 229
BsePI GCGCGC 1 cut(s) 122
BseXI GCAGC 1 cut(s) 632
Bsh1236I CGCG 3 cut(s) 48, 124, 126
BshFI GGCC 4 cut(s) 78, 182, 275, 298
BshNI GGYRCC 1 cut(s) 56
BsiHKAI GWGCWC 1 cut(s) 506
BsiSI CCGG 3 cut(s) 263, 276, 499
BslFI GGGAC 1 cut(s) 448
BslI CCNNNNNNNGG 1 cut(s) 125
BsmAI GTCTC 1 cut(s) 442
BsmBI CGTCTC 1 cut(s) 442
BsmFI GGGAC 1 cut(s) 448
BsnI GGCC 4 cut(s) 78, 182, 275, 298
Bsp1286I GDGCHC 1 cut(s) 506
Bsp143I GATC 2 cut(s) 225, 234
BspANI GGCC 4 cut(s) 78, 182, 275, 298
BspCNI CTCAG 1 cut(s) 661
BspFNI CGCG 3 cut(s) 48, 124, 126
BspHI TCATGA 1 cut(s) 162
BspLI GGNNCC 3 cut(s) 58, 464, 497
BspMAI CTGCAG 1 cut(s) 622
BspMI ACCTGC 1 cut(s) 408
BspPI GGATC 2 cut(s) 220, 229
BspQI GCTCTTC 1 cut(s) 530
BspT107I GGYRCC 1 cut(s) 56
BsrI ACTGG 1 cut(s) 229
BssECI CCNNGG 5 cut(s) 46, 79, 299, 467, 515
BssHII GCGCGC 1 cut(s) 122
BssMI GATC 2 cut(s) 225, 234
BssNAI GTATAC 1 cut(s) 144
BssNI GRCGYC 1 cut(s) 57
BssT1I CCWWGG 1 cut(s) 299
Bst1107I GTATAC 1 cut(s) 144
Bst6I CTCTTC 3 cut(s) 245, 279, 530
BstACI GRCGYC 1 cut(s) 57
BstC8I GCNNGC 3 cut(s) 124, 219, 273
BstDEI CTNAG 1 cut(s) 669
BstDSI CCRYGG 1 cut(s) 46
BstF5I GGATG 1 cut(s) 700
BstFNI CGCG 3 cut(s) 48, 124, 126
BstH2I RGCGCY 1 cut(s) 60
BstHHI GCGC 4 cut(s) 59, 124, 126, 223
BstKTI GATC 2 cut(s) 228, 237
BstMAI GTCTC 1 cut(s) 442
BstMBI GATC 2 cut(s) 225, 234
BstMWI GCNNNNNNNGC 4 cut(s) 17, 54, 268, 665
BstPAI GACNNNNGTC 1 cut(s) 206
BstSFI CTRYAG 1 cut(s) 618
BstUI CGCG 3 cut(s) 48, 124, 126
BstV1I GCAGC 1 cut(s) 632
BstV2I GAAGAC 2 cut(s) 39, 147
BstX2I RGATCY 1 cut(s) 225
BstXI CCANNNNNNTGG 1 cut(s) 691
BstYI RGATCY 1 cut(s) 225
BstZ17I GTATAC 1 cut(s) 144
BsuRI GGCC 4 cut(s) 78, 182, 275, 298
BtgI CCRYGG 1 cut(s) 46
BtsCI GGATG 1 cut(s) 700
BveI ACCTGC 1 cut(s) 408
Cac8I GCNNGC 3 cut(s) 124, 219, 273
CciI TCATGA 1 cut(s) 162
CfoI GCGC 4 cut(s) 59, 124, 126, 223
Cfr13I GGNCC 1 cut(s) 462
Cfr42I CCGCGG 1 cut(s) 49
Csp6I GTAC 1 cut(s) 25
CviAII CATG 3 cut(s) 163, 691, 770
CviQI GTAC 1 cut(s) 25
DdeI CTNAG 1 cut(s) 669
DinI GGCGCC 1 cut(s) 58
DpnI GATC 2 cut(s) 227, 236
DpnII GATC 2 cut(s) 225, 234
DrdI GACNNNNNNGTC 1 cut(s) 456
DriI GACNNNNNGTC 1 cut(s) 613
DseDI GACNNNNNNGTC 1 cut(s) 456
EaeI YGGCCR 1 cut(s) 273
Eam1104I CTCTTC 3 cut(s) 245, 279, 530
Eam1105I GACNNNNNGTC 1 cut(s) 613
EarI CTCTTC 3 cut(s) 245, 279, 530
EciI GGCGGA 1 cut(s) 505
Ecl136II GAGCTC 1 cut(s) 504
Eco130I CCWWGG 1 cut(s) 299
Eco147I AGGCCT 2 cut(s) 78, 182
Eco24I GRGCYC 1 cut(s) 506
Eco47I GGWCC 1 cut(s) 462
Eco53kI GAGCTC 1 cut(s) 504
Eco57I CTGAAG 1 cut(s) 269
EcoICRI GAGCTC 1 cut(s) 504
EcoRI GAATTC 1 cut(s) 713
EcoT14I CCWWGG 1 cut(s) 299
EcoT38I GRGCYC 1 cut(s) 506
EgeI GGCGCC 1 cut(s) 58
EheI GGCGCC 1 cut(s) 58
ErhI CCWWGG 1 cut(s) 299
Esp3I CGTCTC 1 cut(s) 442
FaeI CATG 3 cut(s) 166, 694, 773
FaiI YATR 7 cut(s) 144, 164, 378, 606, 692, 765, 771
FaqI GGGAC 1 cut(s) 448
FatI CATG 3 cut(s) 162, 690, 769
FauI CCCGC 1 cut(s) 50
FblI GTMKAC 1 cut(s) 143
Fnu4HI GCNGC 9 cut(s) 18, 21, 46, 49, 60, 293, 296, 512, 621
FokI GGATG 1 cut(s) 707
FriOI GRGCYC 1 cut(s) 506
Fsp4HI GCNGC 9 cut(s) 18, 21, 46, 49, 60, 293, 296, 512, 621
FspBI CTAG 4 cut(s) 192, 300, 734, 786
GlaI GCGC 4 cut(s) 58, 123, 125, 222
GluI GCNGC 9 cut(s) 18, 21, 46, 49, 60, 293, 296, 512, 621
GsuI CTGGAG 1 cut(s) 169
HaeII RGCGCY 1 cut(s) 60
HaeIII GGCC 4 cut(s) 78, 182, 275, 298
HapII CCGG 3 cut(s) 263, 276, 499
HhaI GCGC 4 cut(s) 59, 124, 126, 223
Hin1I GRCGYC 1 cut(s) 57
Hin1II CATG 3 cut(s) 166, 694, 773
Hin6I GCGC 4 cut(s) 57, 122, 124, 221
HinP1I GCGC 4 cut(s) 57, 122, 124, 221
HinfI GANTC 7 cut(s) 66, 104, 344, 431, 457, 472, 595
HpaII CCGG 3 cut(s) 263, 276, 499
Hpy166II GTNNAC 2 cut(s) 144, 783
Hpy188I TCNGA 7 cut(s) 103, 109, 310, 436, 471, 477, 532
Hpy188III TCNNGA 2 cut(s) 163, 238
Hpy8I GTNNAC 2 cut(s) 144, 783
Hpy99I CGWCG 2 cut(s) 205, 511
HpyAV CCTTC 7 cut(s) 47, 169, 387, 447, 550, 667, 746
HpyCH4V TGCA 2 cut(s) 620, 728
HpyF10VI GCNNNNNNNGC 4 cut(s) 17, 54, 268, 665
HpyF3I CTNAG 1 cut(s) 669
Hsp92I GRCGYC 1 cut(s) 57
Hsp92II CATG 3 cut(s) 166, 694, 773
HspAI GCGC 4 cut(s) 57, 122, 124, 221
KasI GGCGCC 1 cut(s) 56
KspI CCGCGG 1 cut(s) 49
Kzo9I GATC 2 cut(s) 225, 234
LguI GCTCTTC 1 cut(s) 530
LmnI GCTCC 5 cut(s) 268, 363, 414, 495, 501
Lsp1109I GCAGC 1 cut(s) 632
LweI GCATC 1 cut(s) 715
MaeI CTAG 4 cut(s) 192, 300, 734, 786
MalI GATC 2 cut(s) 227, 236
MboI GATC 2 cut(s) 225, 234
MboII GAAGA 6 cut(s) 44, 147, 262, 268, 296, 547
MflI RGATCY 1 cut(s) 225
MhlI GDGCHC 1 cut(s) 506
MluCI AATT 4 cut(s) 170, 548, 590, 713
Mly113I GGCGCC 1 cut(s) 57
MlyI GAGTC 2 cut(s) 353, 466
MmeI TCCRAC 1 cut(s) 676
MspA1I CMGCKG 2 cut(s) 48, 623
MspI CCGG 3 cut(s) 263, 276, 499
MvnI CGCG 3 cut(s) 48, 124, 126
MwoI GCNNNNNNNGC 4 cut(s) 17, 54, 268, 665
NarI GGCGCC 1 cut(s) 57
NdeII GATC 2 cut(s) 225, 234
NlaIII CATG 3 cut(s) 166, 694, 773
NlaIV GGNNCC 3 cut(s) 58, 464, 497
NmeAIII GCCGAG 2 cut(s) 60, 540
PagI TCATGA 1 cut(s) 162
PauI GCGCGC 1 cut(s) 122
PceI AGGCCT 2 cut(s) 78, 182
PciSI GCTCTTC 1 cut(s) 530
PcsI WCGNNNNNNNCGW 2 cut(s) 137, 512
PfeI GAWTC 5 cut(s) 66, 104, 431, 472, 595
PkrI GCNGC 9 cut(s) 19, 22, 47, 50, 61, 294, 297, 513, 622
PleI GAGTC 2 cut(s) 352, 465
PluTI GGCGCC 1 cut(s) 60
PpsI GAGTC 2 cut(s) 352, 465
PshAI GACNNNNGTC 1 cut(s) 206
Psp124BI GAGCTC 1 cut(s) 506
PspN4I GGNNCC 3 cut(s) 58, 464, 497
PspPI GGNCC 1 cut(s) 462
PstI CTGCAG 1 cut(s) 622
PsuI RGATCY 1 cut(s) 225
PteI GCGCGC 1 cut(s) 122
RsaI GTAC 1 cut(s) 26
RsaNI GTAC 1 cut(s) 25
SacI GAGCTC 1 cut(s) 506
SacII CCGCGG 1 cut(s) 49
SapI GCTCTTC 1 cut(s) 530
SatI GCNGC 9 cut(s) 18, 21, 46, 49, 60, 293, 296, 512, 621
Sau3AI GATC 2 cut(s) 225, 234
Sau96I GGNCC 1 cut(s) 462
SchI GAGTC 2 cut(s) 353, 466
SduI GDGCHC 1 cut(s) 506
SetI ASST 9 cut(s) 39, 210, 249, 273, 377, 422, 506, 547, 757
SfaNI GCATC 1 cut(s) 715
SfcI CTRYAG 1 cut(s) 618
SfoI GGCGCC 1 cut(s) 58
Sfr303I CCGCGG 1 cut(s) 49
SgrBI CCGCGG 1 cut(s) 49
SinI GGWCC 1 cut(s) 462
Sse9I AATT 4 cut(s) 170, 548, 590, 713
SseBI AGGCCT 2 cut(s) 78, 182
SspDI GGCGCC 1 cut(s) 56
SspMI CTAG 4 cut(s) 192, 300, 734, 786
SstI GAGCTC 1 cut(s) 506
StuI AGGCCT 2 cut(s) 78, 182
StyI CCWWGG 1 cut(s) 299
TaqI TCGA 4 cut(s) 210, 233, 347, 717
TaqII GACCGA 1 cut(s) 450
TasI AATT 4 cut(s) 170, 548, 590, 713
TauI GCSGC 8 cut(s) 20, 23, 48, 51, 62, 295, 298, 514
TfiI GAWTC 5 cut(s) 66, 104, 431, 472, 595
TseI GCWGC 1 cut(s) 620
TspDTI ATGAA 2 cut(s) 151, 659
TspGWI ACGGA 2 cut(s) 218, 453
VpaK11BI GGWCC 1 cut(s) 462
XapI RAATTY 2 cut(s) 170, 713
XmaJI CCTAGG 1 cut(s) 299
XmiI GTMKAC 1 cut(s) 143
XspI CTAG 4 cut(s) 192, 300, 734, 786
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.