RchiOBHm_Chr7g0179841

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
7
OG0011067
Physical Location & Seq
Reverse (-)
1991226 .. 1994400
3175 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ16033

Sequence Viewer

Length: 1047 bp
ATGGAGGAAGCAAAAGCGGCGGCGTACTACGAAGACCTAACCCGCCGAGGCGAAGGCGCCGCCAGATTCAAACAAGGCCTCGGTTTCTCATCGGCGAAGTCCGATTCCGAAAATGCCCCTGCGCGCGGTTCGGCGGTGGCGTATACTTCCTCGTCTTCCTTCATGAGCAAATTCGTCAAGGCCTCCAGCCCTAGCAAGACGACGGAGGTCGAAAAGCAAGCGCAGATCCAGTCGATTCAGAACAAGCTGAAGAGGAAGAAGCCGGAGGAGCTGGCCGGAGAGGAAGAGAAGCGGCGGCCTAGGGTTTCGGAGAGGGATAAGCGGAGTAGAAGCAGAGAGAGGGAGTCGAGGCGTAGGAGTAGGAGCAGAGAGAGGTATAGAGATAGGGAGAGAGATAGAGAGAGAAGCAGGAGGAGGAGGAGGAGGAGCAGGTCTGGGAGTGAATCGGACGGAGATAGGAGACGAAGGAGTCGGTCACCTCGGAATCGGAGAAAGGAACGGCGGAGGAGCCGGAGCCGGAGCTCGTCGCCGCCGAGGGAGAGGCGTTTGGAGAAGAGCAGAGATAAATTGGAGAAGGAGAGGAGTGGCGGTGGTGCTGACTATTACAAATTGATTCAAGGCTATGACAAAATGTCTGCAGCGGAGAGAGTAAAAGCGAAAATGAAACTCCAACTTGCTGAAACGGCTGAGAAGGACACAACCAAAGGCATGGATGGTTGGGAAAGATTTGAATTCGATAAAGATGCACCACTAGATGATGAGGAGATTGAAGTTGCTGAAGACGATGCAGCGCTCGTCAATCACATAGGCAAAAGCTTTCGGTTTTCAGCATTTGAGACAAAAAGGGAGGAGCGGATCAAAGCGGCTCATGATGAGGCAATGTTTGGTGCATCAGATAATCAACCATCCATTATGATAGACAGTGACGTTGAGGCAGAGAATGATAATAAGGACTGCAAAGAAAGTGAGCCTCCAAGCCTCTTGAGTGAGAAGGTACTTGCCAAAAAACAGGGTTCGTGGCGTGATCGTATACGCCACAACAATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

348

Amino Acids

40.43

Weight (kDa)

10.02

Isoelectric Point (pI)

97.39

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0011067)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G48120 AT3G48120
fragaria_vesca FvH4_5g16290
malus_domestica MD06G1182300.v1.1 MD14G1188300.v1.1
prunus_persica Prupe.5G180400_v2.0.a1
pyrus_communis pycom06g16120
rosa_chinensis RchiOBHm_Chr7g0179841
rosa_laevigata RLG00000005319
rosa_multiflora Rmu_sc0001754.1_g000002 Rmu_sc0004156.1_g000013 Rmu_sc0035735.1_g000001
rosa_roxburghii Rroxscaffold_3G00273410
rosa_rugosa Rorug06G0428800
rosa_samantha Rh7AG028500 Rh7BG027500 Rh7BG027600 Rh7CG029400 Rh7DG028800
rosa_wichuraiana Rw7G002280

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 468
Acc36I ACCTGC 1 cut(s) 420
AccB1I GGYRCC 1 cut(s) 56
AccBSI CCGCTC 1 cut(s) 853
AccI GTMKAC 2 cut(s) 143, 1030
AccII CGCG 2 cut(s) 124, 126
AclWI GGATC 2 cut(s) 220, 863
AcoI YGGCCR 1 cut(s) 273
AcsI RAATTY 2 cut(s) 170, 731
AcuI CTGAAG 2 cut(s) 269, 798
AcyI GRCGYC 1 cut(s) 57
AfaI GTAC 2 cut(s) 26, 996
AfeI AGCGCT 1 cut(s) 792
AfiI CCNNNNNNNGG 1 cut(s) 125
AgsI TTSAA 4 cut(s) 70, 617, 731, 770
AhdI GACNNNNNGTC 1 cut(s) 631
AluBI AGCT 4 cut(s) 247, 271, 522, 816
AluI AGCT 4 cut(s) 247, 271, 522, 816
Alw21I GWGCWC 1 cut(s) 524
Alw26I GTCTC 2 cut(s) 454, 830
AlwI GGATC 2 cut(s) 220, 863
Aor51HI AGCGCT 1 cut(s) 792
AoxI GGCC 4 cut(s) 76, 180, 273, 296
ApeKI GCWGC 2 cut(s) 638, 788
ApoI RAATTY 2 cut(s) 170, 731
AspA2I CCTAGG 1 cut(s) 299
AspLEI GCGC 5 cut(s) 59, 124, 126, 223, 793
AsuHPI GGTGA 1 cut(s) 468
AvrII CCTAGG 1 cut(s) 299
BanI GGYRCC 1 cut(s) 56
BanII GRGCYC 1 cut(s) 524
BbsI GAAGAC 3 cut(s) 39, 147, 786
Bbv12I GWGCWC 1 cut(s) 524
BbvI GCAGC 2 cut(s) 650, 800
BccI CCATC 2 cut(s) 707, 913
BceAI ACGGC 2 cut(s) 515, 699
BcgI CGANNNNNNTGC 2 cut(s) 725, 759
BcoDI GTCTC 2 cut(s) 454, 830
BfaI CTAG 3 cut(s) 192, 300, 752
BfmI CTRYAG 1 cut(s) 636
BfoI RGCGCY 2 cut(s) 60, 794
BfuAI ACCTGC 1 cut(s) 420
BisI GCNGC 9 cut(s) 18, 21, 60, 293, 296, 530, 639, 789, 864
BlnI CCTAGG 1 cut(s) 299
BlsI GCNGC 9 cut(s) 19, 22, 61, 294, 297, 531, 640, 790, 865
BmeRI GACNNNNNGTC 1 cut(s) 631
BmiI GGNNCC 3 cut(s) 58, 509, 515
BmsI GCATC 3 cut(s) 733, 775, 899
BoxI GACNNNNGTC 1 cut(s) 206
BpiI GAAGAC 3 cut(s) 39, 147, 786
BpmI CTGGAG 1 cut(s) 169
BpuEI CTTGAG 1 cut(s) 1003
BsaHI GRCGYC 1 cut(s) 57
BsaJI CCNNGG 5 cut(s) 46, 79, 299, 479, 533
BsaXI ACNNNNNCTCC 2 cut(s) 574, 604
Bsc4I CCNNNNNNNGG 1 cut(s) 125
Bse1I ACTGG 1 cut(s) 229
Bse3DI GCAATG 1 cut(s) 885
BseDI CCNNGG 5 cut(s) 46, 79, 299, 479, 533
BseGI GGATG 2 cut(s) 718, 905
BseLI CCNNNNNNNGG 1 cut(s) 125
BseMI GCAATG 1 cut(s) 885
BseMII CTCAG 1 cut(s) 678
BseNI ACTGG 1 cut(s) 229
BsePI GCGCGC 1 cut(s) 122
BseXI GCAGC 2 cut(s) 650, 800
Bsh1236I CGCG 2 cut(s) 124, 126
BshFI GGCC 4 cut(s) 78, 182, 275, 298
BshNI GGYRCC 1 cut(s) 56
BsiHKAI GWGCWC 1 cut(s) 524
BsiSI CCGG 4 cut(s) 263, 276, 511, 517
BslI CCNNNNNNNGG 1 cut(s) 125
BsmAI GTCTC 2 cut(s) 454, 830
BsmBI CGTCTC 1 cut(s) 454
BsnI GGCC 4 cut(s) 78, 182, 275, 298
Bsp1286I GDGCHC 1 cut(s) 524
Bsp143I GATC 3 cut(s) 225, 855, 1024
BspANI GGCC 4 cut(s) 78, 182, 275, 298
BspCNI CTCAG 1 cut(s) 679
BspFNI CGCG 2 cut(s) 124, 126
BspHI TCATGA 2 cut(s) 162, 868
BspLI GGNNCC 3 cut(s) 58, 509, 515
BspMAI CTGCAG 1 cut(s) 640
BspMI ACCTGC 1 cut(s) 420
BspPI GGATC 2 cut(s) 220, 863
BspQI GCTCTTC 1 cut(s) 548
BspT107I GGYRCC 1 cut(s) 56
BsrBI CCGCTC 1 cut(s) 853
BsrDI GCAATG 1 cut(s) 885
BsrI ACTGG 1 cut(s) 229
BssECI CCNNGG 5 cut(s) 46, 79, 299, 479, 533
BssHII GCGCGC 1 cut(s) 122
BssMI GATC 3 cut(s) 225, 855, 1024
BssNAI GTATAC 2 cut(s) 144, 1031
BssNI GRCGYC 1 cut(s) 57
BssT1I CCWWGG 1 cut(s) 299
Bst1107I GTATAC 2 cut(s) 144, 1031
Bst4CI ACNGT 1 cut(s) 923
Bst6I CTCTTC 3 cut(s) 245, 279, 548
BstACI GRCGYC 1 cut(s) 57
BstC8I GCNNGC 3 cut(s) 124, 219, 273
BstDEI CTNAG 1 cut(s) 687
BstEII GGTNACC 1 cut(s) 474
BstF5I GGATG 2 cut(s) 718, 905
BstFNI CGCG 2 cut(s) 124, 126
BstH2I RGCGCY 2 cut(s) 60, 794
BstHHI GCGC 5 cut(s) 59, 124, 126, 223, 793
BstKTI GATC 3 cut(s) 228, 858, 1027
BstMAI GTCTC 2 cut(s) 454, 830
BstMBI GATC 3 cut(s) 225, 855, 1024
BstMWI GCNNNNNNNGC 3 cut(s) 17, 268, 683
BstPAI GACNNNNGTC 1 cut(s) 206
BstPI GGTNACC 1 cut(s) 474
BstSFI CTRYAG 1 cut(s) 636
BstUI CGCG 2 cut(s) 124, 126
BstV1I GCAGC 2 cut(s) 650, 800
BstV2I GAAGAC 3 cut(s) 39, 147, 786
BstX2I RGATCY 1 cut(s) 225
BstXI CCANNNNNNTGG 1 cut(s) 709
BstYI RGATCY 1 cut(s) 225
BstZ17I GTATAC 2 cut(s) 144, 1031
BsuRI GGCC 4 cut(s) 78, 182, 275, 298
BtsCI GGATG 2 cut(s) 718, 905
BtsIMutI CAGTG 1 cut(s) 928
BveI ACCTGC 1 cut(s) 420
Cac8I GCNNGC 3 cut(s) 124, 219, 273
CciI TCATGA 2 cut(s) 162, 868
CfoI GCGC 5 cut(s) 59, 124, 126, 223, 793
Csp6I GTAC 2 cut(s) 25, 995
CspCI CAANNNNNGTGG 1 cut(s) 1025
CviAII CATG 3 cut(s) 163, 709, 869
CviQI GTAC 2 cut(s) 25, 995
DdeI CTNAG 1 cut(s) 687
DinI GGCGCC 1 cut(s) 58
DpnI GATC 3 cut(s) 227, 857, 1026
DpnII GATC 3 cut(s) 225, 855, 1024
DrdI GACNNNNNNGTC 1 cut(s) 468
DriI GACNNNNNGTC 1 cut(s) 631
DseDI GACNNNNNNGTC 1 cut(s) 468
EaeI YGGCCR 1 cut(s) 273
Eam1104I CTCTTC 3 cut(s) 245, 279, 548
Eam1105I GACNNNNNGTC 1 cut(s) 631
EarI CTCTTC 3 cut(s) 245, 279, 548
EciI GGCGGA 1 cut(s) 517
Ecl136II GAGCTC 1 cut(s) 522
Eco130I CCWWGG 1 cut(s) 299
Eco147I AGGCCT 2 cut(s) 78, 182
Eco24I GRGCYC 1 cut(s) 524
Eco47III AGCGCT 1 cut(s) 792
Eco53kI GAGCTC 1 cut(s) 522
Eco57I CTGAAG 2 cut(s) 269, 798
Eco91I GGTNACC 1 cut(s) 474
EcoICRI GAGCTC 1 cut(s) 522
EcoO65I GGTNACC 1 cut(s) 474
EcoRI GAATTC 1 cut(s) 731
EcoT14I CCWWGG 1 cut(s) 299
EcoT38I GRGCYC 1 cut(s) 524
EgeI GGCGCC 1 cut(s) 58
EheI GGCGCC 1 cut(s) 58
ErhI CCWWGG 1 cut(s) 299
Esp3I CGTCTC 1 cut(s) 454
FaeI CATG 3 cut(s) 166, 712, 872
FaiI YATR 9 cut(s) 144, 164, 378, 624, 710, 806, 870, 914, 1031
FatI CATG 3 cut(s) 162, 708, 868
FauI CCCGC 1 cut(s) 50
FblI GTMKAC 2 cut(s) 143, 1030
Fnu4HI GCNGC 9 cut(s) 18, 21, 60, 293, 296, 530, 639, 789, 864
FokI GGATG 2 cut(s) 725, 892
FriOI GRGCYC 1 cut(s) 524
Fsp4HI GCNGC 9 cut(s) 18, 21, 60, 293, 296, 530, 639, 789, 864
FspBI CTAG 3 cut(s) 192, 300, 752
GlaI GCGC 5 cut(s) 58, 123, 125, 222, 792
GluI GCNGC 9 cut(s) 18, 21, 60, 293, 296, 530, 639, 789, 864
GsuI CTGGAG 1 cut(s) 169
HaeII RGCGCY 2 cut(s) 60, 794
HaeIII GGCC 4 cut(s) 78, 182, 275, 298
HapII CCGG 4 cut(s) 263, 276, 511, 517
HhaI GCGC 5 cut(s) 59, 124, 126, 223, 793
Hin1I GRCGYC 1 cut(s) 57
Hin1II CATG 3 cut(s) 166, 712, 872
Hin6I GCGC 5 cut(s) 57, 122, 124, 221, 791
HinP1I GCGC 5 cut(s) 57, 122, 124, 221, 791
HindIII AAGCTT 1 cut(s) 814
HinfI GANTC 8 cut(s) 66, 104, 235, 344, 443, 469, 484, 613
HpaII CCGG 4 cut(s) 263, 276, 511, 517
HphI GGTGA 1 cut(s) 468
Hpy166II GTNNAC 2 cut(s) 144, 1031
Hpy188I TCNGA 8 cut(s) 103, 109, 240, 310, 448, 483, 489, 895
Hpy188III TCNNGA 3 cut(s) 163, 869, 982
Hpy8I GTNNAC 2 cut(s) 144, 1031
Hpy99I CGWCG 2 cut(s) 205, 529
HpyAV CCTTC 6 cut(s) 47, 169, 459, 568, 685, 985
HpyCH4III ACNGT 1 cut(s) 923
HpyCH4IV ACGT 1 cut(s) 927
HpyCH4V TGCA 5 cut(s) 638, 746, 788, 890, 957
HpyF10VI GCNNNNNNNGC 3 cut(s) 17, 268, 683
HpyF3I CTNAG 1 cut(s) 687
HpySE526I ACGT 1 cut(s) 927
Hsp92I GRCGYC 1 cut(s) 57
Hsp92II CATG 3 cut(s) 166, 712, 872
HspAI GCGC 5 cut(s) 57, 122, 124, 221, 791
KasI GGCGCC 1 cut(s) 56
Kzo9I GATC 3 cut(s) 225, 855, 1024
LguI GCTCTTC 1 cut(s) 548
LmnI GCTCC 7 cut(s) 268, 363, 426, 507, 513, 519, 850
Lsp1109I GCAGC 2 cut(s) 650, 800
LweI GCATC 3 cut(s) 733, 775, 899
MaeI CTAG 3 cut(s) 192, 300, 752
MaeII ACGT 1 cut(s) 927
MaeIII GTNAC 2 cut(s) 474, 923
MalI GATC 3 cut(s) 227, 857, 1026
MbiI CCGCTC 1 cut(s) 853
MboI GATC 3 cut(s) 225, 855, 1024
MboII GAAGA 7 cut(s) 44, 147, 262, 268, 296, 565, 791
MfeI CAATTG 1 cut(s) 1042
MflI RGATCY 1 cut(s) 225
MhlI GDGCHC 1 cut(s) 524
MluCI AATT 5 cut(s) 170, 566, 608, 731, 1042
Mly113I GGCGCC 1 cut(s) 57
MlyI GAGTC 2 cut(s) 353, 478
MmeI TCCRAC 1 cut(s) 694
MspA1I CMGCKG 1 cut(s) 641
MspI CCGG 4 cut(s) 263, 276, 511, 517
MunI CAATTG 1 cut(s) 1042
MvnI CGCG 2 cut(s) 124, 126
MwoI GCNNNNNNNGC 3 cut(s) 17, 268, 683
NarI GGCGCC 1 cut(s) 57
NdeII GATC 3 cut(s) 225, 855, 1024
NlaIII CATG 3 cut(s) 166, 712, 872
NlaIV GGNNCC 3 cut(s) 58, 509, 515
NmeAIII GCCGAG 2 cut(s) 71, 558
NmuCI GTSAC 2 cut(s) 474, 923
PagI TCATGA 2 cut(s) 162, 868
PauI GCGCGC 1 cut(s) 122
PceI AGGCCT 2 cut(s) 78, 182
PciSI GCTCTTC 1 cut(s) 548
PcsI WCGNNNNNNNCGW 2 cut(s) 137, 530
PfeI GAWTC 6 cut(s) 66, 104, 235, 443, 484, 613
PkrI GCNGC 9 cut(s) 19, 22, 61, 294, 297, 531, 640, 790, 865
PleI GAGTC 2 cut(s) 352, 477
PluTI GGCGCC 1 cut(s) 60
PpsI GAGTC 2 cut(s) 352, 477
PshAI GACNNNNGTC 1 cut(s) 206
Psp124BI GAGCTC 1 cut(s) 524
PspEI GGTNACC 1 cut(s) 474
PspN4I GGNNCC 3 cut(s) 58, 509, 515
PstI CTGCAG 1 cut(s) 640
PsuI RGATCY 1 cut(s) 225
PteI GCGCGC 1 cut(s) 122
RsaI GTAC 2 cut(s) 26, 996
RsaNI GTAC 2 cut(s) 25, 995
SacI GAGCTC 1 cut(s) 524
SapI GCTCTTC 1 cut(s) 548
SatI GCNGC 9 cut(s) 18, 21, 60, 293, 296, 530, 639, 789, 864
Sau3AI GATC 3 cut(s) 225, 855, 1024
SchI GAGTC 2 cut(s) 353, 478
SduI GDGCHC 1 cut(s) 524
SfaNI GCATC 3 cut(s) 733, 775, 899
SfcI CTRYAG 1 cut(s) 636
SfoI GGCGCC 1 cut(s) 58
SmlI CTYRAG 1 cut(s) 982
SmoI CTYRAG 1 cut(s) 982
Sse9I AATT 5 cut(s) 170, 566, 608, 731, 1042
SseBI AGGCCT 2 cut(s) 78, 182
SspDI GGCGCC 1 cut(s) 56
SspMI CTAG 3 cut(s) 192, 300, 752
SstI GAGCTC 1 cut(s) 524
StuI AGGCCT 2 cut(s) 78, 182
StyI CCWWGG 1 cut(s) 299
TaaI ACNGT 1 cut(s) 923
TaiI ACGT 1 cut(s) 930
TaqI TCGA 4 cut(s) 210, 233, 347, 735
TaqII GACCGA 1 cut(s) 462
TasI AATT 5 cut(s) 170, 566, 608, 731, 1042
TauI GCSGC 7 cut(s) 20, 23, 62, 295, 298, 532, 866
TfiI GAWTC 6 cut(s) 66, 104, 235, 443, 484, 613
TscAI CASTG 1 cut(s) 928
TseFI GTSAC 2 cut(s) 474, 923
TseI GCWGC 2 cut(s) 638, 788
Tsp45I GTSAC 2 cut(s) 474, 923
TspDTI ATGAA 2 cut(s) 151, 677
TspGWI ACGGA 2 cut(s) 218, 465
TspRI CASTG 1 cut(s) 928
XapI RAATTY 2 cut(s) 170, 731
XmaJI CCTAGG 1 cut(s) 299
XmiI GTMKAC 2 cut(s) 143, 1030
XspI CTAG 3 cut(s) 192, 300, 752
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.