Prupe.5G180400_v2.0.a1

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp05
OG0011067
Physical Location & Seq
Reverse (-)
15137439 .. 15140480
3042 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.5G180400.1

Sequence Viewer

Length: 1101 bp
ATGGAGGAGGCAAAAGCCGCGGCGTACTACGAGGAGTTGACTCGGCGCGGTGAAGGAGCCGCCAGATTCAAGCAAGGCTTGGGCTTCTCTTCGGCAAGCACAGATTCCGAAAACCCCCCTACGCGCGGTTCAGCGCTGCCTTATTCGTCGTCTTCTTTCCTCAGCAAGTTCGTCAAGGCCTCTAGCCCGAAAAAGGAGTCGGAGCTCCAAAAGCAAGCCCAAATCGAGTCCATACAGAACAAGCTCAAGAGGAAGAAGTCCGACCTGGCCGAAGAAGAAGAAGAGAAACAACCGCCTAGGGTTTCGCATAGAGAAAGTAAGCATTCGAGGAAGCGAAGCAGGAGCAGGAGCAGAGAAAGGCATTCGAGGCGGCGAAGTAGGAGCAGAGAGAGACATAGAGATAGAGATAGGGAAAGGGAAAGGGATAGGGATAGAGATAGAGATAGAGATAGAGAGAGAAGGAGAAGGAGAAGTAGGTCTGGGAGCGATTCGGATGGAGGTAGAAGACGAAGAGGGAGGAGCCGGAGTCGAAGTCGGTCACCTCGGGATCGGAGAAAGGAGCGAAGGAGTCGGAGCTCGTCGCCGAGAGAGAGGGATTTGGAGAAGAGCAAGGGTAAAATGGGGAAGGAGAGAAATGGTGCTGCTGATTATTCAAAGTTGATTCAAGGCTATGATAAAATGTCAGCAGCCGAGAGAGTCAAAGCGAAGATGAAATTTCAACTTGCTGAAACTGCTGAGAAGGATATGACGAAGGGCATGGGCTCTGGTTGGGAAAGATTTGAATTCAACAAAGATGCACCACTTGATGATGAGGAAGTTGAAGTTGCTGAAGATGATGCAGCATTAGTTAAGCACATTGGGAGAAGCTTTCGGTTTTCTGCGATTGAGAACAAAAGGGAGGAGAAGATCAAAACTGCTCATGATGAGGCTATGTTCGGTTCATCGGATAATCCACCATCCATTATGATAGATAGTGAGGTTGAGGCAGAGAACGATATAAGGGACAGCAAAGAAAGTGAACCTACAAGCTTATTGAGTGATAAGGTACTTGCGAAAAAACAAGGCTCATGGCGTGACCGTATACGTGACAAAAGGAATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

367

Amino Acids

42.61

Weight (kDa)

10.2

Isoelectric Point (pI)

88.65

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0011067)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G48120 AT3G48120
fragaria_vesca FvH4_5g16290
malus_domestica MD06G1182300.v1.1 MD14G1188300.v1.1
prunus_persica Prupe.5G180400_v2.0.a1
pyrus_communis pycom06g16120
rosa_chinensis RchiOBHm_Chr7g0179841
rosa_laevigata RLG00000005319
rosa_multiflora Rmu_sc0001754.1_g000002 Rmu_sc0004156.1_g000013 Rmu_sc0035735.1_g000001
rosa_roxburghii Rroxscaffold_3G00273410
rosa_rugosa Rorug06G0428800
rosa_samantha Rh7AG028500 Rh7BG027500 Rh7BG027600 Rh7CG029400 Rh7DG028800
rosa_wichuraiana Rw7G002280

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 1081
AccII CGCG 4 cut(s) 20, 48, 124, 126
AciI CCGC 7 cut(s) 18, 20, 48, 60, 126, 293, 370
AclWI GGATC 1 cut(s) 555
AcoI YGGCCR 1 cut(s) 267
AcsI RAATTY 2 cut(s) 713, 782
AcuI CTGAAG 1 cut(s) 849
AfaI GTAC 2 cut(s) 26, 1047
AfeI AGCGCT 1 cut(s) 135
AfiI CCNNNNNNNGG 2 cut(s) 125, 193
AgsI TTSAA 7 cut(s) 70, 654, 665, 719, 782, 787, 821
AjnI CCWGG 1 cut(s) 264
AluBI AGCT 5 cut(s) 205, 244, 576, 867, 1029
AluI AGCT 5 cut(s) 205, 244, 576, 867, 1029
Alw21I GWGCWC 2 cut(s) 207, 578
Alw26I GTCTC 1 cut(s) 385
AlwI GGATC 1 cut(s) 555
Ama87I CYCGRG 1 cut(s) 543
Aor51HI AGCGCT 1 cut(s) 135
AoxI GGCC 2 cut(s) 177, 267
ApeKI GCWGC 4 cut(s) 136, 641, 686, 839
ApoI RAATTY 2 cut(s) 713, 782
ArsI GACNNNNNNTTYG 2 cut(s) 182, 214
AspA2I CCTAGG 1 cut(s) 296
AspLEI GCGC 3 cut(s) 48, 126, 136
AsuHPI GGTGA 2 cut(s) 62, 531
AvaI CYCGRG 1 cut(s) 543
AvrII CCTAGG 1 cut(s) 296
BanII GRGCYC 3 cut(s) 207, 578, 764
BbsI GAAGAC 2 cut(s) 144, 511
Bbv12I GWGCWC 2 cut(s) 207, 578
BbvCI CCTCAGC 1 cut(s) 161
BbvI GCAGC 4 cut(s) 123, 628, 698, 851
BccI CCATC 2 cut(s) 488, 964
BciT130I CCWGG 1 cut(s) 266
BcoDI GTCTC 1 cut(s) 385
BfaI CTAG 2 cut(s) 183, 297
BfoI RGCGCY 1 cut(s) 137
BisI GCNGC 8 cut(s) 18, 21, 60, 137, 371, 642, 687, 840
BlnI CCTAGG 1 cut(s) 296
BlsI GCNGC 8 cut(s) 19, 22, 61, 138, 372, 643, 688, 841
Bme1390I CCNGG 1 cut(s) 266
BmeT110I CYCGRG 1 cut(s) 543
BmiI GGNNCC 2 cut(s) 58, 521
BmrFI CCNGG 1 cut(s) 266
BmsI GCATC 2 cut(s) 784, 826
BpiI GAAGAC 2 cut(s) 144, 511
Bpu10I CCTNAGC 1 cut(s) 161
BpuEI CTTGAG 1 cut(s) 230
BsaAI YACGTR 1 cut(s) 1085
BsaJI CCNNGG 3 cut(s) 18, 296, 542
BsaXI ACNNNNNCTCC 4 cut(s) 511, 517, 541, 547
Bsc4I CCNNNNNNNGG 2 cut(s) 125, 193
BseBI CCWGG 1 cut(s) 266
BseDI CCNNGG 3 cut(s) 18, 296, 542
BseGI GGATG 2 cut(s) 499, 956
BseLI CCNNNNNNNGG 2 cut(s) 125, 193
BseMII CTCAG 2 cut(s) 175, 726
BseRI GAGGAG 4 cut(s) 20, 47, 532, 914
BseXI GCAGC 4 cut(s) 123, 628, 698, 851
Bsh1236I CGCG 4 cut(s) 20, 48, 124, 126
BshFI GGCC 2 cut(s) 179, 269
BsiHKAI GWGCWC 2 cut(s) 207, 578
BsiHKCI CYCGRG 1 cut(s) 543
BsiSI CCGG 1 cut(s) 523
BslFI GGGAC 1 cut(s) 1016
BslI CCNNNNNNNGG 2 cut(s) 125, 193
BsmAI GTCTC 1 cut(s) 385
BsmFI GGGAC 1 cut(s) 1016
BsmI GAATGC 2 cut(s) 322, 361
BsnI GGCC 2 cut(s) 179, 269
BsoBI CYCGRG 1 cut(s) 543
Bsp1286I GDGCHC 3 cut(s) 207, 578, 764
Bsp143I GATC 2 cut(s) 547, 906
BspACI CCGC 7 cut(s) 18, 20, 48, 60, 126, 293, 370
BspANI GGCC 2 cut(s) 179, 269
BspCNI CTCAG 2 cut(s) 174, 727
BspFNI CGCG 4 cut(s) 20, 48, 124, 126
BspHI TCATGA 1 cut(s) 919
BspLI GGNNCC 2 cut(s) 58, 521
BspPI GGATC 1 cut(s) 555
BspQI GCTCTTC 1 cut(s) 599
BssECI CCNNGG 3 cut(s) 18, 296, 542
BssMI GATC 2 cut(s) 547, 906
BssNAI GTATAC 1 cut(s) 1082
BssT1I CCWWGG 1 cut(s) 296
Bst1107I GTATAC 1 cut(s) 1082
Bst2UI CCWGG 1 cut(s) 266
Bst4CI ACNGT 1 cut(s) 1079
Bst6I CTCTTC 4 cut(s) 94, 276, 505, 599
BstBAI YACGTR 1 cut(s) 1085
BstC8I GCNNGC 2 cut(s) 97, 216
BstDEI CTNAG 2 cut(s) 161, 735
BstDSI CCRYGG 1 cut(s) 18
BstEII GGTNACC 1 cut(s) 537
BstF5I GGATG 2 cut(s) 499, 956
BstFNI CGCG 4 cut(s) 20, 48, 124, 126
BstH2I RGCGCY 1 cut(s) 137
BstHHI GCGC 3 cut(s) 48, 126, 136
BstKTI GATC 2 cut(s) 550, 909
BstMAI GTCTC 1 cut(s) 385
BstMBI GATC 2 cut(s) 547, 906
BstMWI GCNNNNNNNGC 4 cut(s) 17, 211, 367, 731
BstNI CCWGG 1 cut(s) 266
BstPI GGTNACC 1 cut(s) 537
BstSCI CCNGG 1 cut(s) 264
BstUI CGCG 4 cut(s) 20, 48, 124, 126
BstV1I GCAGC 4 cut(s) 123, 628, 698, 851
BstV2I GAAGAC 2 cut(s) 144, 511
BstZ17I GTATAC 1 cut(s) 1082
BsuRI GGCC 2 cut(s) 179, 269
BtgI CCRYGG 1 cut(s) 18
BtsCI GGATG 2 cut(s) 499, 956
Cac8I GCNNGC 2 cut(s) 97, 216
CciI TCATGA 1 cut(s) 919
CfoI GCGC 3 cut(s) 48, 126, 136
Cfr42I CCGCGG 1 cut(s) 21
Csp6I GTAC 2 cut(s) 25, 1046
CviAII CATG 3 cut(s) 757, 920, 1068
CviQI GTAC 2 cut(s) 25, 1046
DdeI CTNAG 2 cut(s) 161, 735
DpnI GATC 2 cut(s) 549, 908
DpnII GATC 2 cut(s) 547, 906
EaeI YGGCCR 1 cut(s) 267
Eam1104I CTCTTC 4 cut(s) 94, 276, 505, 599
EarI CTCTTC 4 cut(s) 94, 276, 505, 599
Ecl136II GAGCTC 2 cut(s) 205, 576
Eco130I CCWWGG 1 cut(s) 296
Eco147I AGGCCT 1 cut(s) 179
Eco24I GRGCYC 3 cut(s) 207, 578, 764
Eco47III AGCGCT 1 cut(s) 135
Eco53kI GAGCTC 2 cut(s) 205, 576
Eco57I CTGAAG 1 cut(s) 849
Eco88I CYCGRG 1 cut(s) 543
Eco91I GGTNACC 1 cut(s) 537
EcoICRI GAGCTC 2 cut(s) 205, 576
EcoO65I GGTNACC 1 cut(s) 537
EcoRI GAATTC 1 cut(s) 782
EcoRII CCWGG 1 cut(s) 264
EcoT14I CCWWGG 1 cut(s) 296
EcoT38I GRGCYC 3 cut(s) 207, 578, 764
ErhI CCWWGG 1 cut(s) 296
FaeI CATG 3 cut(s) 760, 923, 1071
FalI AAGNNNNNCTT 2 cut(s) 62, 94
FaqI GGGAC 1 cut(s) 1016
FatI CATG 3 cut(s) 756, 919, 1067
FblI GTMKAC 1 cut(s) 1081
Fnu4HI GCNGC 8 cut(s) 18, 21, 60, 137, 371, 642, 687, 840
FokI GGATG 2 cut(s) 506, 943
FriOI GRGCYC 3 cut(s) 207, 578, 764
Fsp4HI GCNGC 8 cut(s) 18, 21, 60, 137, 371, 642, 687, 840
FspBI CTAG 2 cut(s) 183, 297
GlaI GCGC 3 cut(s) 47, 125, 135
GluI GCNGC 8 cut(s) 18, 21, 60, 137, 371, 642, 687, 840
HaeII RGCGCY 1 cut(s) 137
HaeIII GGCC 2 cut(s) 179, 269
HapII CCGG 1 cut(s) 523
HhaI GCGC 3 cut(s) 48, 126, 136
Hin1II CATG 3 cut(s) 760, 923, 1071
Hin6I GCGC 3 cut(s) 46, 124, 134
HinP1I GCGC 3 cut(s) 46, 124, 134
HincII GTYRAC 1 cut(s) 39
HindII GTYRAC 1 cut(s) 39
HindIII AAGCTT 2 cut(s) 865, 1027
HpaII CCGG 1 cut(s) 523
HphI GGTGA 2 cut(s) 62, 531
Hpy166II GTNNAC 3 cut(s) 39, 1019, 1082
Hpy188I TCNGA 7 cut(s) 109, 202, 262, 493, 552, 573, 946
Hpy188III TCNNGA 3 cut(s) 247, 545, 920
Hpy8I GTNNAC 3 cut(s) 39, 1019, 1082
Hpy99I CGWCG 2 cut(s) 151, 583
HpyAV CCTTC 7 cut(s) 47, 453, 459, 558, 619, 733, 745
HpyCH4III ACNGT 1 cut(s) 1079
HpyCH4IV ACGT 1 cut(s) 1084
HpyCH4V TGCA 2 cut(s) 797, 839
HpyF10VI GCNNNNNNNGC 4 cut(s) 17, 211, 367, 731
HpyF3I CTNAG 2 cut(s) 161, 735
HpySE526I ACGT 1 cut(s) 1084
Hsp92II CATG 3 cut(s) 760, 923, 1071
HspAI GCGC 3 cut(s) 46, 124, 134
KspI CCGCGG 1 cut(s) 21
Kzo9I GATC 2 cut(s) 547, 906
LguI GCTCTTC 1 cut(s) 599
LpnPI CCDG 8 cut(s) 76, 251, 278, 325, 331, 465, 536, 750
Lsp1109I GCAGC 4 cut(s) 123, 628, 698, 851
LweI GCATC 2 cut(s) 784, 826
MaeI CTAG 2 cut(s) 183, 297
MaeII ACGT 1 cut(s) 1084
MaeIII GTNAC 3 cut(s) 537, 1073, 1085
MalI GATC 2 cut(s) 549, 908
MboI GATC 2 cut(s) 547, 906
MhlI GDGCHC 3 cut(s) 207, 578, 764
MluCI AATT 3 cut(s) 713, 782, 1096
MlyI GAGTC 6 cut(s) 34, 206, 236, 535, 577, 705
MmeI TCCRAC 3 cut(s) 180, 285, 551
MseI TTAA 1 cut(s) 849
MspA1I CMGCKG 1 cut(s) 20
MspI CCGG 1 cut(s) 523
MspR9I CCNGG 1 cut(s) 266
Mva1269I GAATGC 2 cut(s) 322, 361
MvaI CCWGG 1 cut(s) 266
MvnI CGCG 4 cut(s) 20, 48, 124, 126
MwoI GCNNNNNNNGC 4 cut(s) 17, 211, 367, 731
NdeII GATC 2 cut(s) 547, 906
NlaIII CATG 3 cut(s) 760, 923, 1071
NlaIV GGNNCC 2 cut(s) 58, 521
NmeAIII GCCGAG 3 cut(s) 22, 609, 715
NmuCI GTSAC 3 cut(s) 537, 1073, 1085
PagI TCATGA 1 cut(s) 919
PceI AGGCCT 1 cut(s) 179
PciSI GCTCTTC 1 cut(s) 599
PctI GAATGC 2 cut(s) 322, 361
PfeI GAWTC 4 cut(s) 66, 104, 488, 661
PkrI GCNGC 8 cut(s) 19, 22, 61, 138, 372, 643, 688, 841
PleI GAGTC 6 cut(s) 34, 205, 235, 534, 576, 704
PpsI GAGTC 6 cut(s) 34, 205, 235, 534, 576, 704
Ppu21I YACGTR 1 cut(s) 1085
Psp124BI GAGCTC 2 cut(s) 207, 578
Psp6I CCWGG 1 cut(s) 264
PspEI GGTNACC 1 cut(s) 537
PspGI CCWGG 1 cut(s) 264
PspN4I GGNNCC 2 cut(s) 58, 521
RsaI GTAC 2 cut(s) 26, 1047
RsaNI GTAC 2 cut(s) 25, 1046
SacI GAGCTC 2 cut(s) 207, 578
SacII CCGCGG 1 cut(s) 21
SapI GCTCTTC 1 cut(s) 599
SaqAI TTAA 1 cut(s) 849
SatI GCNGC 8 cut(s) 18, 21, 60, 137, 371, 642, 687, 840
Sau3AI GATC 2 cut(s) 547, 906
SchI GAGTC 6 cut(s) 34, 206, 236, 535, 577, 705
ScrFI CCNGG 1 cut(s) 266
SduI GDGCHC 3 cut(s) 207, 578, 764
SfaNI GCATC 2 cut(s) 784, 826
Sfr303I CCGCGG 1 cut(s) 21
SgrBI CCGCGG 1 cut(s) 21
SmlI CTYRAG 1 cut(s) 245
SmoI CTYRAG 1 cut(s) 245
Sse9I AATT 3 cut(s) 713, 782, 1096
SseBI AGGCCT 1 cut(s) 179
SsiI CCGC 7 cut(s) 18, 20, 48, 60, 126, 293, 370
SspMI CTAG 2 cut(s) 183, 297
SstI GAGCTC 2 cut(s) 207, 578
StuI AGGCCT 1 cut(s) 179
StyD4I CCNGG 1 cut(s) 264
StyI CCWWGG 1 cut(s) 296
TaaI ACNGT 1 cut(s) 1079
TaiI ACGT 1 cut(s) 1087
TaqI TCGA 4 cut(s) 225, 326, 365, 529
TaqII GACCGA 1 cut(s) 525
TasI AATT 3 cut(s) 713, 782, 1096
TauI GCSGC 4 cut(s) 20, 23, 62, 373
TfiI GAWTC 4 cut(s) 66, 104, 488, 661
Tru1I TTAA 1 cut(s) 849
Tru9I TTAA 1 cut(s) 849
TseFI GTSAC 3 cut(s) 537, 1073, 1085
TseI GCWGC 4 cut(s) 136, 641, 686, 839
Tsp45I GTSAC 3 cut(s) 537, 1073, 1085
TspDTI ATGAA 2 cut(s) 725, 930
XapI RAATTY 2 cut(s) 713, 782
XmaJI CCTAGG 1 cut(s) 296
XmiI GTMKAC 1 cut(s) 1081
XspI CTAG 2 cut(s) 183, 297
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.