pycom06g16120

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr6
OG0011067
Physical Location & Seq
Reverse (-)
20530330 .. 20532370
2041 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom06g16120.1

Sequence Viewer

Length: 1080 bp
ATGGAGGAGGAAAAAGCAGCGGCGTACTACGACGAGCTGACTCGGCGCGGCGAAGGAGCCGCCCGATTCAAACAAGGCCTCGGCTTTTCTTCCGCAAACTCGGATTCCGAAAATACCCCTGTGCGCGGTTCAGCGCTGGCGTATTCCACCTCGTCCTCCTTCCTCAGTAAGTTCGTCAAGGCGTCCAGCCCGAAGAAAGAGTCGGAGCTCCGAAATCAGGCCCAAATCGAGTCCATACAGAACAAGCTCAAGAGGAAGAGGCCCGATGCGGCGGAGGAAAGAGATGAGAAACAACCGGCTAGGGTTTCGCAGAGAGAGAATAAGCATTCGAGGAAGCGGGGCAGGAGCAGGAGCAGAGAGAGGCATTCGAGGCGGAGAAGTAGGAGCAGAGAGAGATATAGAGAAAGAGATAGGGATAGAGAGAAAAGGAAGAGGAGGAGTAGGTCCGGGAGCGATTCCGATGGAGGTAGACGACGGAGAGGGAGGAGCCGGAGTCGGAGTCGGTCGCCTCGGGATCGGAGAAAGGAGCGGCGGAGGAGTCGGAGCTCGTCGCCGAGGGAGAGGGGTTCGGAGAGGACCAAAGGTAAATCGGGGAAGGAGAGGAAAGGCGGCGGTGCTGATTATTCCAAGCTGATTGAGGGCTATGATAAGATGTCAGCGGCCGAGAGAGTGAAGGCGAAGATGAAGCTTCAACTGGCCGAAACTTCTGAGAAGGATACGGCGAAAGGGAAGGGCTCAGGTTGGGAAAGATTCGAGTTCAACAAAGATGCACCACTTGATGATGAAGAAGTTGAAGCTGCTGATGATGATGCAGCACTAGTTAAGCACATTGGCCAAAGCTTCCGGTTTTCTGCAGTTGAGACAAAAAGGGAGGAGCAGCTCAGATCTGCTCATGATGAGGCTATGTTTGGTGCATCAGATGATCGACCGACCATTGTGATGGATAGTGAAATTGAGGAAGAGAACGACACAAAGGATAGCAAAGAAAGTGAGCCTACAACTACAGTCCTCTTGAGTGATACGGTACTTGCAAAGAAACAAGGTTCCTGGCGTGATCGTATACGTGACAAAAGGAATTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

360

Amino Acids

41.29

Weight (kDa)

10.2

Isoelectric Point (pI)

87.96

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0011067)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G48120 AT3G48120
fragaria_vesca FvH4_5g16290
malus_domestica MD06G1182300.v1.1 MD14G1188300.v1.1
prunus_persica Prupe.5G180400_v2.0.a1
pyrus_communis pycom06g16120
rosa_chinensis RchiOBHm_Chr7g0179841
rosa_laevigata RLG00000005319
rosa_multiflora Rmu_sc0001754.1_g000002 Rmu_sc0004156.1_g000013 Rmu_sc0035735.1_g000001
rosa_roxburghii Rroxscaffold_3G00273410
rosa_rugosa Rorug06G0428800
rosa_samantha Rh7AG028500 Rh7BG027500 Rh7BG027600 Rh7CG029400 Rh7DG028800
rosa_wichuraiana Rw7G002280

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 529
AccI GTMKAC 2 cut(s) 469, 1060
AccII CGCG 2 cut(s) 48, 126
AclWI GGATC 1 cut(s) 522
AcoI YGGCCR 3 cut(s) 660, 696, 832
AcyI GRCGYC 1 cut(s) 182
AfaI GTAC 2 cut(s) 26, 1026
AfeI AGCGCT 1 cut(s) 135
AfiI CCNNNNNNNGG 2 cut(s) 125, 217
AgsI TTSAA 4 cut(s) 70, 692, 760, 794
AhlI ACTAGT 1 cut(s) 817
AjnI CCWGG 1 cut(s) 1046
AluBI AGCT 9 cut(s) 37, 208, 247, 546, 631, 688, 797, 840, 880
AluI AGCT 9 cut(s) 37, 208, 247, 546, 631, 688, 797, 840, 880
Alw21I GWGCWC 2 cut(s) 210, 548
Alw26I GTCTC 1 cut(s) 854
AlwI GGATC 1 cut(s) 522
Ama87I CYCGRG 1 cut(s) 510
Aor51HI AGCGCT 1 cut(s) 135
AoxI GGCC 6 cut(s) 76, 219, 260, 660, 696, 832
ApeKI GCWGC 4 cut(s) 17, 797, 812, 877
ArsI GACNNNNNNTTYG 2 cut(s) 185, 217
AspLEI GCGC 3 cut(s) 48, 126, 136
AspS9I GGNCC 4 cut(s) 220, 261, 444, 576
AsuC2I CCSGG 1 cut(s) 448
AvaI CYCGRG 1 cut(s) 510
AvaII GGWCC 2 cut(s) 444, 576
BalI TGGCCA 1 cut(s) 834
BanII GRGCYC 3 cut(s) 210, 548, 737
Bbv12I GWGCWC 2 cut(s) 210, 548
BbvI GCAGC 4 cut(s) 29, 784, 824, 889
BccI CCATC 2 cut(s) 455, 934
BceAI ACGGC 1 cut(s) 735
BciT130I CCWGG 1 cut(s) 1048
BciVI GTATCC 1 cut(s) 709
BcnI CCSGG 1 cut(s) 448
BcoDI GTCTC 1 cut(s) 854
BcuI ACTAGT 1 cut(s) 817
BfaI CTAG 2 cut(s) 300, 818
BfmI CTRYAG 2 cut(s) 852, 1002
BfoI RGCGCY 1 cut(s) 137
BfuI GTATCC 1 cut(s) 709
BglII AGATCT 1 cut(s) 884
Bme1390I CCNGG 2 cut(s) 448, 1048
Bme18I GGWCC 2 cut(s) 444, 576
BmeT110I CYCGRG 1 cut(s) 510
BmgT120I GGNCC 4 cut(s) 220, 261, 444, 576
BmiI GGNNCC 3 cut(s) 58, 488, 1045
BmrFI CCNGG 2 cut(s) 448, 1048
BmsI GCATC 4 cut(s) 256, 757, 799, 923
Bpu10I CCTNAGC 1 cut(s) 736
BpuEI CTTGAG 2 cut(s) 233, 1033
BpuMI CCSGG 1 cut(s) 448
BsaAI YACGTR 1 cut(s) 1064
BsaHI GRCGYC 1 cut(s) 182
BsaJI CCNNGG 3 cut(s) 79, 509, 554
BsaWI WCCGGW 1 cut(s) 843
BsaXI ACNNNNNCTCC 4 cut(s) 478, 484, 508, 514
Bsc4I CCNNNNNNNGG 2 cut(s) 125, 217
Bse118I RCCGGY 1 cut(s) 295
Bse1I ACTGG 1 cut(s) 699
BseBI CCWGG 1 cut(s) 1048
BseDI CCNNGG 3 cut(s) 79, 509, 554
BseLI CCNNNNNNNGG 2 cut(s) 125, 217
BseMII CTCAG 4 cut(s) 178, 699, 750, 895
BseNI ACTGG 1 cut(s) 699
BseRI GAGGAG 6 cut(s) 20, 448, 451, 499, 550, 887
BseX3I CGGCCG 1 cut(s) 660
BseXI GCAGC 4 cut(s) 29, 784, 824, 889
Bsh1236I CGCG 2 cut(s) 48, 126
Bsh1285I CGRYCG 3 cut(s) 506, 663, 929
BshFI GGCC 6 cut(s) 78, 221, 262, 662, 698, 834
BsiEI CGRYCG 3 cut(s) 506, 663, 929
BsiHKAI GWGCWC 2 cut(s) 210, 548
BsiHKCI CYCGRG 1 cut(s) 510
BsiSI CCGG 4 cut(s) 296, 447, 490, 844
BslI CCNNNNNNNGG 2 cut(s) 125, 217
BsmAI GTCTC 1 cut(s) 854
BsmI GAATGC 2 cut(s) 325, 364
BsnI GGCC 6 cut(s) 78, 221, 262, 662, 698, 834
BsoBI CYCGRG 1 cut(s) 510
Bsp1286I GDGCHC 3 cut(s) 210, 548, 737
Bsp143I GATC 4 cut(s) 514, 884, 922, 1054
BspANI GGCC 6 cut(s) 78, 221, 262, 662, 698, 834
BspCNI CTCAG 4 cut(s) 177, 700, 749, 894
BspFNI CGCG 2 cut(s) 48, 126
BspHI TCATGA 1 cut(s) 892
BspLI GGNNCC 3 cut(s) 58, 488, 1045
BspMAI CTGCAG 1 cut(s) 856
BspPI GGATC 1 cut(s) 522
BsrBI CCGCTC 1 cut(s) 529
BsrFI RCCGGY 1 cut(s) 295
BsrI ACTGG 1 cut(s) 699
BssAI RCCGGY 1 cut(s) 295
BssECI CCNNGG 3 cut(s) 79, 509, 554
BssMI GATC 4 cut(s) 514, 884, 922, 1054
BssNAI GTATAC 1 cut(s) 1061
BssNI GRCGYC 1 cut(s) 182
Bst1107I GTATAC 1 cut(s) 1061
Bst2UI CCWGG 1 cut(s) 1048
Bst4CI ACNGT 2 cut(s) 1006, 1024
Bst6I CTCTTC 3 cut(s) 251, 425, 954
BstACI GRCGYC 1 cut(s) 182
BstBAI YACGTR 1 cut(s) 1064
BstC8I GCNNGC 1 cut(s) 138
BstDEI CTNAG 4 cut(s) 164, 708, 736, 881
BstFNI CGCG 2 cut(s) 48, 126
BstH2I RGCGCY 1 cut(s) 137
BstHHI GCGC 3 cut(s) 48, 126, 136
BstKTI GATC 4 cut(s) 517, 887, 925, 1057
BstMAI GTCTC 1 cut(s) 854
BstMBI GATC 4 cut(s) 514, 884, 922, 1054
BstMCI CGRYCG 3 cut(s) 506, 663, 929
BstMWI GCNNNNNNNGC 2 cut(s) 43, 370
BstNI CCWGG 1 cut(s) 1048
BstSCI CCNGG 2 cut(s) 446, 1046
BstSFI CTRYAG 2 cut(s) 852, 1002
BstUI CGCG 2 cut(s) 48, 126
BstV1I GCAGC 4 cut(s) 29, 784, 824, 889
BstX2I RGATCY 1 cut(s) 884
BstXI CCANNNNNNTGG 1 cut(s) 940
BstYI RGATCY 1 cut(s) 884
BstZ17I GTATAC 1 cut(s) 1061
BstZI CGGCCG 1 cut(s) 660
BsuI GTATCC 1 cut(s) 709
BsuRI GGCC 6 cut(s) 78, 221, 262, 662, 698, 834
Cac8I GCNNGC 1 cut(s) 138
CciI TCATGA 1 cut(s) 892
CfoI GCGC 3 cut(s) 48, 126, 136
Cfr10I RCCGGY 1 cut(s) 295
Cfr13I GGNCC 4 cut(s) 220, 261, 444, 576
CseI GACGC 1 cut(s) 171
Csp6I GTAC 2 cut(s) 25, 1025
CviAII CATG 1 cut(s) 893
CviQI GTAC 2 cut(s) 25, 1025
DdeI CTNAG 4 cut(s) 164, 708, 736, 881
DpnI GATC 4 cut(s) 516, 886, 924, 1056
DpnII GATC 4 cut(s) 514, 884, 922, 1054
EaeI YGGCCR 3 cut(s) 660, 696, 832
EagI CGGCCG 1 cut(s) 660
Eam1104I CTCTTC 3 cut(s) 251, 425, 954
EarI CTCTTC 3 cut(s) 251, 425, 954
EciI GGCGGA 3 cut(s) 287, 388, 547
Ecl136II GAGCTC 2 cut(s) 208, 546
EclXI CGGCCG 1 cut(s) 660
Eco147I AGGCCT 1 cut(s) 78
Eco24I GRGCYC 3 cut(s) 210, 548, 737
Eco47I GGWCC 2 cut(s) 444, 576
Eco47III AGCGCT 1 cut(s) 135
Eco52I CGGCCG 1 cut(s) 660
Eco53kI GAGCTC 2 cut(s) 208, 546
Eco88I CYCGRG 1 cut(s) 510
EcoICRI GAGCTC 2 cut(s) 208, 546
EcoRII CCWGG 1 cut(s) 1046
EcoT38I GRGCYC 3 cut(s) 210, 548, 737
FaeI CATG 1 cut(s) 896
FaiI YATR 6 cut(s) 236, 399, 645, 894, 905, 1061
FatI CATG 1 cut(s) 892
FauI CCCGC 1 cut(s) 330
FblI GTMKAC 2 cut(s) 469, 1060
FriOI GRGCYC 3 cut(s) 210, 548, 737
FspBI CTAG 2 cut(s) 300, 818
GlaI GCGC 3 cut(s) 47, 125, 135
HaeII RGCGCY 1 cut(s) 137
HaeIII GGCC 6 cut(s) 78, 221, 262, 662, 698, 834
HapII CCGG 4 cut(s) 296, 447, 490, 844
HgaI GACGC 1 cut(s) 171
HhaI GCGC 3 cut(s) 48, 126, 136
Hin1I GRCGYC 1 cut(s) 182
Hin1II CATG 1 cut(s) 896
Hin6I GCGC 3 cut(s) 46, 124, 134
HinP1I GCGC 3 cut(s) 46, 124, 134
HindIII AAGCTT 2 cut(s) 686, 838
HpaII CCGG 4 cut(s) 296, 447, 490, 844
Hpy166II GTNNAC 2 cut(s) 470, 1061
Hpy188III TCNNGA 4 cut(s) 250, 512, 893, 1012
Hpy8I GTNNAC 2 cut(s) 470, 1061
Hpy99I CGWCG 3 cut(s) 35, 477, 553
HpyAV CCTTC 6 cut(s) 47, 169, 589, 667, 706, 724
HpyCH4III ACNGT 2 cut(s) 1006, 1024
HpyCH4IV ACGT 1 cut(s) 1063
HpyCH4V TGCA 5 cut(s) 770, 812, 854, 914, 1031
HpyF10VI GCNNNNNNNGC 2 cut(s) 43, 370
HpyF3I CTNAG 4 cut(s) 164, 708, 736, 881
HpySE526I ACGT 1 cut(s) 1063
Hsp92I GRCGYC 1 cut(s) 182
Hsp92II CATG 1 cut(s) 896
HspAI GCGC 3 cut(s) 46, 124, 134
Kzo9I GATC 4 cut(s) 514, 884, 922, 1054
Lsp1109I GCAGC 4 cut(s) 29, 784, 824, 889
LweI GCATC 4 cut(s) 256, 757, 799, 923
MaeI CTAG 2 cut(s) 300, 818
MaeII ACGT 1 cut(s) 1063
MaeIII GTNAC 1 cut(s) 1064
MalI GATC 4 cut(s) 516, 886, 924, 1056
MbiI CCGCTC 1 cut(s) 529
MboI GATC 4 cut(s) 514, 884, 922, 1054
MboII GAAGA 7 cut(s) 81, 205, 268, 442, 691, 797, 971
MflI RGATCY 1 cut(s) 884
MhlI GDGCHC 3 cut(s) 210, 548, 737
MlsI TGGCCA 1 cut(s) 834
MluCI AATT 2 cut(s) 951, 1075
MluNI TGGCCA 1 cut(s) 834
MlyI GAGTC 6 cut(s) 34, 209, 239, 502, 508, 547
MmeI TCCRAC 3 cut(s) 183, 476, 521
Mox20I TGGCCA 1 cut(s) 834
MscI TGGCCA 1 cut(s) 834
MseI TTAA 2 cut(s) 822, 1078
MslI CAYNNNNRTG 1 cut(s) 938
Msp20I TGGCCA 1 cut(s) 834
MspA1I CMGCKG 2 cut(s) 20, 659
MspI CCGG 4 cut(s) 296, 447, 490, 844
MspR9I CCNGG 2 cut(s) 448, 1048
Mva1269I GAATGC 2 cut(s) 325, 364
MvaI CCWGG 1 cut(s) 1048
MvnI CGCG 2 cut(s) 48, 126
MwoI GCNNNNNNNGC 2 cut(s) 43, 370
NciI CCSGG 1 cut(s) 448
NdeII GATC 4 cut(s) 514, 884, 922, 1054
NlaIII CATG 1 cut(s) 896
NlaIV GGNNCC 3 cut(s) 58, 488, 1045
NmeAIII GCCGAG 4 cut(s) 22, 60, 579, 688
NmuCI GTSAC 1 cut(s) 1064
PagI TCATGA 1 cut(s) 892
PceI AGGCCT 1 cut(s) 78
PctI GAATGC 2 cut(s) 325, 364
PfeI GAWTC 4 cut(s) 66, 104, 455, 750
PfoI TCCNGGA 1 cut(s) 446
PleI GAGTC 6 cut(s) 34, 208, 238, 501, 507, 546
PpsI GAGTC 6 cut(s) 34, 208, 238, 501, 507, 546
Ppu21I YACGTR 1 cut(s) 1064
Psp124BI GAGCTC 2 cut(s) 210, 548
Psp6I CCWGG 1 cut(s) 1046
PspGI CCWGG 1 cut(s) 1046
PspN4I GGNNCC 3 cut(s) 58, 488, 1045
PspPI GGNCC 4 cut(s) 220, 261, 444, 576
PstI CTGCAG 1 cut(s) 856
PsuI RGATCY 1 cut(s) 884
RsaI GTAC 2 cut(s) 26, 1026
RsaNI GTAC 2 cut(s) 25, 1025
RseI CAYNNNNRTG 1 cut(s) 938
SacI GAGCTC 2 cut(s) 210, 548
SaqAI TTAA 2 cut(s) 822, 1078
Sau3AI GATC 4 cut(s) 514, 884, 922, 1054
Sau96I GGNCC 4 cut(s) 220, 261, 444, 576
SchI GAGTC 6 cut(s) 34, 209, 239, 502, 508, 547
ScrFI CCNGG 2 cut(s) 448, 1048
SduI GDGCHC 3 cut(s) 210, 548, 737
SfaNI GCATC 4 cut(s) 256, 757, 799, 923
SfcI CTRYAG 2 cut(s) 852, 1002
SinI GGWCC 2 cut(s) 444, 576
SmiMI CAYNNNNRTG 1 cut(s) 938
SmlI CTYRAG 2 cut(s) 248, 1012
SmoI CTYRAG 2 cut(s) 248, 1012
SpeI ACTAGT 1 cut(s) 817
Sse9I AATT 2 cut(s) 951, 1075
SseBI AGGCCT 1 cut(s) 78
SspMI CTAG 2 cut(s) 300, 818
SstI GAGCTC 2 cut(s) 210, 548
StuI AGGCCT 1 cut(s) 78
StyD4I CCNGG 2 cut(s) 446, 1046
TaaI ACNGT 2 cut(s) 1006, 1024
TaiI ACGT 1 cut(s) 1066
TaqI TCGA 5 cut(s) 228, 329, 368, 753, 925
TaqII GACCGA 2 cut(s) 492, 943
TasI AATT 2 cut(s) 951, 1075
TauI GCSGC 7 cut(s) 23, 51, 62, 272, 532, 612, 662
TfiI GAWTC 4 cut(s) 66, 104, 455, 750
Tru1I TTAA 2 cut(s) 822, 1078
Tru9I TTAA 2 cut(s) 822, 1078
TseFI GTSAC 1 cut(s) 1064
TseI GCWGC 4 cut(s) 17, 797, 812, 877
Tsp45I GTSAC 1 cut(s) 1064
TspDTI ATGAA 2 cut(s) 698, 798
TspGWI ACGGA 1 cut(s) 490
VpaK11BI GGWCC 2 cut(s) 444, 576
XmiI GTMKAC 2 cut(s) 469, 1060
XspI CTAG 2 cut(s) 300, 818
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.