Rh7BG027600

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7B
OG0011067
Physical Location & Seq
Reverse (-)
1925200 .. 1925559
360 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7BG027600.1

Sequence Viewer

Length: 360 bp
ATGGAGGAAGCAAAAGCGGCGGCGTACTACGAAGACCTAACCCGGCGCGGCGAAGGCGCCGCCAGATTCAAACAAGGCCTCGGCTTCTCTTCGGCCAAGTCCGATTCCGAAAATGCCCCTGCGCGCGGTTCGGCGGTGGCGTATACTTCCTCGTCTTCCTTCATGAGCAAATTCGTCAAGGCCTCCAGCCCTAGCAAGACGACGGAGCTCGAAAAGCAAGCGCAGATCCAGTCGATTCAGAACAAGCTGAAGAGGAAGAAGCCGGAGGAGCTGGCCGGAGAGGAAGAGAAGCGGCCGCCTAGGGTTTCAGAGAGGGATAAGCGGAGTAGAAGCAGAGAGAGGGATTCGAGGCATCCATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

119

Amino Acids

13.31

Weight (kDa)

9.88

Isoelectric Point (pI)

83.29

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0011067)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G48120 AT3G48120
fragaria_vesca FvH4_5g16290
malus_domestica MD06G1182300.v1.1 MD14G1188300.v1.1
prunus_persica Prupe.5G180400_v2.0.a1
pyrus_communis pycom06g16120
rosa_chinensis RchiOBHm_Chr7g0179841
rosa_laevigata RLG00000005319
rosa_multiflora Rmu_sc0001754.1_g000002 Rmu_sc0004156.1_g000013 Rmu_sc0035735.1_g000001
rosa_roxburghii Rroxscaffold_3G00273410
rosa_rugosa Rorug06G0428800
rosa_samantha Rh7AG028500 Rh7BG027500 Rh7BG027600 Rh7CG029400 Rh7DG028800
rosa_wichuraiana Rw7G002280

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 56
AccI GTMKAC 1 cut(s) 143
AccII CGCG 3 cut(s) 48, 124, 126
AciI CCGC 9 cut(s) 17, 20, 48, 60, 126, 134, 292, 296, 322
AclWI GGATC 1 cut(s) 220
AcoI YGGCCR 3 cut(s) 93, 273, 293
AcsI RAATTY 1 cut(s) 170
AcuI CTGAAG 1 cut(s) 269
AcyI GRCGYC 1 cut(s) 57
AfaI GTAC 1 cut(s) 26
AfiI CCNNNNNNNGG 1 cut(s) 125
AgsI TTSAA 1 cut(s) 70
AluBI AGCT 3 cut(s) 208, 247, 271
AluI AGCT 3 cut(s) 208, 247, 271
Alw21I GWGCWC 1 cut(s) 210
AlwI GGATC 1 cut(s) 220
AoxI GGCC 5 cut(s) 76, 93, 180, 273, 293
ApoI RAATTY 1 cut(s) 170
AspA2I CCTAGG 1 cut(s) 299
AspLEI GCGC 5 cut(s) 48, 59, 124, 126, 223
AsuC2I CCSGG 1 cut(s) 43
AvrII CCTAGG 1 cut(s) 299
BanI GGYRCC 1 cut(s) 56
BanII GRGCYC 1 cut(s) 210
BbsI GAAGAC 2 cut(s) 39, 147
Bbv12I GWGCWC 1 cut(s) 210
BcnI CCSGG 1 cut(s) 43
BfaI CTAG 2 cut(s) 192, 300
BfoI RGCGCY 1 cut(s) 60
BisI GCNGC 6 cut(s) 18, 21, 49, 60, 293, 296
BlnI CCTAGG 1 cut(s) 299
BlsI GCNGC 6 cut(s) 19, 22, 50, 61, 294, 297
Bme1390I CCNGG 1 cut(s) 43
BmiI GGNNCC 1 cut(s) 58
BmrFI CCNGG 1 cut(s) 43
BpiI GAAGAC 2 cut(s) 39, 147
BpmI CTGGAG 1 cut(s) 169
BpuMI CCSGG 1 cut(s) 43
BsaHI GRCGYC 1 cut(s) 57
BsaJI CCNNGG 2 cut(s) 79, 299
Bsc4I CCNNNNNNNGG 1 cut(s) 125
Bse1I ACTGG 1 cut(s) 229
BseDI CCNNGG 2 cut(s) 79, 299
BseGI GGATG 1 cut(s) 352
BseLI CCNNNNNNNGG 1 cut(s) 125
BseNI ACTGG 1 cut(s) 229
BsePI GCGCGC 1 cut(s) 122
BseRI GAGGAG 1 cut(s) 281
BseX3I CGGCCG 1 cut(s) 293
Bsh1236I CGCG 3 cut(s) 48, 124, 126
Bsh1285I CGRYCG 1 cut(s) 296
BshFI GGCC 5 cut(s) 78, 95, 182, 275, 295
BshNI GGYRCC 1 cut(s) 56
BsiEI CGRYCG 1 cut(s) 296
BsiHKAI GWGCWC 1 cut(s) 210
BsiSI CCGG 3 cut(s) 43, 263, 276
BslI CCNNNNNNNGG 1 cut(s) 125
BsnI GGCC 5 cut(s) 78, 95, 182, 275, 295
Bsp1286I GDGCHC 1 cut(s) 210
Bsp143I GATC 1 cut(s) 225
BspACI CCGC 9 cut(s) 17, 20, 48, 60, 126, 134, 292, 296, 322
BspANI GGCC 5 cut(s) 78, 95, 182, 275, 295
BspFNI CGCG 3 cut(s) 48, 124, 126
BspHI TCATGA 1 cut(s) 162
BspLI GGNNCC 1 cut(s) 58
BspPI GGATC 1 cut(s) 220
BspT107I GGYRCC 1 cut(s) 56
BsrI ACTGG 1 cut(s) 229
BssECI CCNNGG 2 cut(s) 79, 299
BssHII GCGCGC 1 cut(s) 122
BssMI GATC 1 cut(s) 225
BssNAI GTATAC 1 cut(s) 144
BssNI GRCGYC 1 cut(s) 57
BssT1I CCWWGG 1 cut(s) 299
Bst1107I GTATAC 1 cut(s) 144
Bst6I CTCTTC 3 cut(s) 94, 245, 279
BstACI GRCGYC 1 cut(s) 57
BstC8I GCNNGC 3 cut(s) 124, 219, 273
BstF5I GGATG 1 cut(s) 352
BstFNI CGCG 3 cut(s) 48, 124, 126
BstH2I RGCGCY 1 cut(s) 60
BstHHI GCGC 5 cut(s) 48, 59, 124, 126, 223
BstKTI GATC 1 cut(s) 228
BstMBI GATC 1 cut(s) 225
BstMCI CGRYCG 1 cut(s) 296
BstMWI GCNNNNNNNGC 4 cut(s) 17, 54, 214, 268
BstSCI CCNGG 1 cut(s) 41
BstUI CGCG 3 cut(s) 48, 124, 126
BstV2I GAAGAC 2 cut(s) 39, 147
BstX2I RGATCY 1 cut(s) 225
BstYI RGATCY 1 cut(s) 225
BstZ17I GTATAC 1 cut(s) 144
BstZI CGGCCG 1 cut(s) 293
BsuRI GGCC 5 cut(s) 78, 95, 182, 275, 295
BtsCI GGATG 1 cut(s) 352
Cac8I GCNNGC 3 cut(s) 124, 219, 273
CciI TCATGA 1 cut(s) 162
CciNI GCGGCCGC 1 cut(s) 293
CfoI GCGC 5 cut(s) 48, 59, 124, 126, 223
Csp6I GTAC 1 cut(s) 25
CviAII CATG 1 cut(s) 163
CviQI GTAC 1 cut(s) 25
DinI GGCGCC 1 cut(s) 58
DpnI GATC 1 cut(s) 227
DpnII GATC 1 cut(s) 225
EaeI YGGCCR 3 cut(s) 93, 273, 293
EagI CGGCCG 1 cut(s) 293
Eam1104I CTCTTC 3 cut(s) 94, 245, 279
EarI CTCTTC 3 cut(s) 94, 245, 279
Ecl136II GAGCTC 1 cut(s) 208
EclXI CGGCCG 1 cut(s) 293
Eco130I CCWWGG 1 cut(s) 299
Eco147I AGGCCT 2 cut(s) 78, 182
Eco24I GRGCYC 1 cut(s) 210
Eco52I CGGCCG 1 cut(s) 293
Eco53kI GAGCTC 1 cut(s) 208
Eco57I CTGAAG 1 cut(s) 269
EcoICRI GAGCTC 1 cut(s) 208
EcoT14I CCWWGG 1 cut(s) 299
EcoT38I GRGCYC 1 cut(s) 210
EgeI GGCGCC 1 cut(s) 58
EheI GGCGCC 1 cut(s) 58
ErhI CCWWGG 1 cut(s) 299
FaeI CATG 1 cut(s) 166
FaiI YATR 3 cut(s) 144, 164, 358
FatI CATG 1 cut(s) 162
FblI GTMKAC 1 cut(s) 143
Fnu4HI GCNGC 6 cut(s) 18, 21, 49, 60, 293, 296
FokI GGATG 1 cut(s) 339
FriOI GRGCYC 1 cut(s) 210
Fsp4HI GCNGC 6 cut(s) 18, 21, 49, 60, 293, 296
FspBI CTAG 2 cut(s) 192, 300
GlaI GCGC 5 cut(s) 47, 58, 123, 125, 222
GluI GCNGC 6 cut(s) 18, 21, 49, 60, 293, 296
GsuI CTGGAG 1 cut(s) 169
HaeII RGCGCY 1 cut(s) 60
HaeIII GGCC 5 cut(s) 78, 95, 182, 275, 295
HapII CCGG 3 cut(s) 43, 263, 276
HhaI GCGC 5 cut(s) 48, 59, 124, 126, 223
Hin1I GRCGYC 1 cut(s) 57
Hin1II CATG 1 cut(s) 166
Hin6I GCGC 5 cut(s) 46, 57, 122, 124, 221
HinP1I GCGC 5 cut(s) 46, 57, 122, 124, 221
HinfI GANTC 4 cut(s) 66, 104, 235, 344
HpaII CCGG 3 cut(s) 43, 263, 276
Hpy166II GTNNAC 1 cut(s) 144
Hpy188I TCNGA 4 cut(s) 103, 109, 240, 310
Hpy188III TCNNGA 1 cut(s) 163
Hpy8I GTNNAC 1 cut(s) 144
Hpy99I CGWCG 1 cut(s) 205
HpyAV CCTTC 2 cut(s) 47, 169
HpyF10VI GCNNNNNNNGC 4 cut(s) 17, 54, 214, 268
Hsp92I GRCGYC 1 cut(s) 57
Hsp92II CATG 1 cut(s) 166
HspAI GCGC 5 cut(s) 46, 57, 122, 124, 221
KasI GGCGCC 1 cut(s) 56
Kzo9I GATC 1 cut(s) 225
LmnI GCTCC 2 cut(s) 205, 268
LpnPI CCDG 8 cut(s) 56, 76, 132, 199, 242, 257, 276, 289
MaeI CTAG 2 cut(s) 192, 300
MalI GATC 1 cut(s) 227
MboI GATC 1 cut(s) 225
MboII GAAGA 6 cut(s) 44, 81, 147, 262, 268, 296
MflI RGATCY 1 cut(s) 225
MhlI GDGCHC 1 cut(s) 210
MluCI AATT 1 cut(s) 170
Mly113I GGCGCC 1 cut(s) 57
MnlI CCTC 9 cut(s) 89, 160, 193, 246, 259, 274, 306, 333, 342
MspI CCGG 3 cut(s) 43, 263, 276
MspR9I CCNGG 1 cut(s) 43
MvnI CGCG 3 cut(s) 48, 124, 126
MwoI GCNNNNNNNGC 4 cut(s) 17, 54, 214, 268
NarI GGCGCC 1 cut(s) 57
NciI CCSGG 1 cut(s) 43
NdeII GATC 1 cut(s) 225
NlaIII CATG 1 cut(s) 166
NlaIV GGNNCC 1 cut(s) 58
NmeAIII GCCGAG 1 cut(s) 60
NotI GCGGCCGC 1 cut(s) 293
PagI TCATGA 1 cut(s) 162
PauI GCGCGC 1 cut(s) 122
PceI AGGCCT 2 cut(s) 78, 182
PcsI WCGNNNNNNNCGW 1 cut(s) 137
PfeI GAWTC 4 cut(s) 66, 104, 235, 344
PkrI GCNGC 6 cut(s) 19, 22, 50, 61, 294, 297
PluTI GGCGCC 1 cut(s) 60
Psp124BI GAGCTC 1 cut(s) 210
PspN4I GGNNCC 1 cut(s) 58
PsuI RGATCY 1 cut(s) 225
PteI GCGCGC 1 cut(s) 122
RsaI GTAC 1 cut(s) 26
RsaNI GTAC 1 cut(s) 25
SacI GAGCTC 1 cut(s) 210
SatI GCNGC 6 cut(s) 18, 21, 49, 60, 293, 296
Sau3AI GATC 1 cut(s) 225
ScrFI CCNGG 1 cut(s) 43
SduI GDGCHC 1 cut(s) 210
SetI ASST 4 cut(s) 39, 210, 249, 273
SfoI GGCGCC 1 cut(s) 58
Sse9I AATT 1 cut(s) 170
SseBI AGGCCT 2 cut(s) 78, 182
SsiI CCGC 9 cut(s) 17, 20, 48, 60, 126, 134, 292, 296, 322
SspDI GGCGCC 1 cut(s) 56
SspMI CTAG 2 cut(s) 192, 300
SstI GAGCTC 1 cut(s) 210
StuI AGGCCT 2 cut(s) 78, 182
StyD4I CCNGG 1 cut(s) 41
StyI CCWWGG 1 cut(s) 299
TaqI TCGA 3 cut(s) 210, 233, 347
TasI AATT 1 cut(s) 170
TauI GCSGC 6 cut(s) 20, 23, 51, 62, 295, 298
TfiI GAWTC 4 cut(s) 66, 104, 235, 344
TspDTI ATGAA 1 cut(s) 151
TspGWI ACGGA 1 cut(s) 218
XapI RAATTY 1 cut(s) 170
XmaJI CCTAGG 1 cut(s) 299
XmiI GTMKAC 1 cut(s) 143
XspI CTAG 2 cut(s) 192, 300
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.