Rmu_sc0004156.1_g000013

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0004156.1
OG0011067
Physical Location & Seq
Reverse (-)
71386 .. 73704
2319 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0004156.1_g000013.1.cds

Sequence Viewer

Length: 1050 bp
atggaggaagcaaaagcggcggcgtactacgaagacctaacccgccgcggcgaaggcgccgccagattcaaacaaggcctcggcttctcatcggcgaagtccgattccgaaaatgcccctgcgcgcggttcggcggtggcgtatacttcctcgtcttccttcatgagcaaattcgtcaaggcctccagccctagcaagacgacggaggtcgaaaagcaagcgcagatccagtcgattcagaacaagctgaagaggaagaagccggaggagctggccggagaggaagagaagcggcggcctagggtttcggagagggataagcggagtagaagcagagagagggagtcgaggcgtaggagtaggagcagagagaggtatagagatagggagagagatagagagagaagcaggaggaggaggaggaggaggagcaggtctgggagtgaatcggacggagataggagacgaaggagtcggtcccctcggaatcggagaaaggaacggcggaggagccggagccggagctcgtcgccgccgagggagaggcgtttggagaagagcagagataaattggagaaggagaggaatggcggtggtgctgactattacaaattgattcaaggctatgacaaaatgtctgcagcggagagagtaaaagcgaaaatgaaactccaacttgctgaaacggctgagaaggacacaaccaaaggcatggatggttgggaaagatttgaattcgataaagatgcaccactagacgatgaggagattgaagttgctgaagacgatgcagcgctcgtcaatcacataggcaaaagctttcggttttcagcatttgagacaaaaagggaggagcggatcaaagctgctcatgatgaggcaatgtttggtgcatcagataatcaaccatccattatgatagacagtgacgttgaggcagagaatgataataaggactgcaaagaaagtgagcctccaagcctcttgagtgagaaggtacttgccaaaaaacaaggttcgtggcgtgatcgtatacgccacaacaattga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

349

Amino Acids

40.61

Weight (kDa)

10.06

Isoelectric Point (pI)

97.45

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0011067)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G48120 AT3G48120
fragaria_vesca FvH4_5g16290
malus_domestica MD06G1182300.v1.1 MD14G1188300.v1.1
prunus_persica Prupe.5G180400_v2.0.a1
pyrus_communis pycom06g16120
rosa_chinensis RchiOBHm_Chr7g0179841
rosa_laevigata RLG00000005319
rosa_multiflora Rmu_sc0001754.1_g000002 Rmu_sc0004156.1_g000013 Rmu_sc0035735.1_g000001
rosa_roxburghii Rroxscaffold_3G00273410
rosa_rugosa Rorug06G0428800
rosa_samantha Rh7AG028500 Rh7BG027500 Rh7BG027600 Rh7CG029400 Rh7DG028800
rosa_wichuraiana Rw7G002280

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 471
Acc36I ACCTGC 1 cut(s) 423
AccB1I GGYRCC 1 cut(s) 56
AccBSI CCGCTC 1 cut(s) 856
AccI GTMKAC 2 cut(s) 143, 1033
AccII CGCG 3 cut(s) 48, 124, 126
AclWI GGATC 2 cut(s) 220, 866
AcoI YGGCCR 1 cut(s) 273
AcsI RAATTY 2 cut(s) 170, 734
AcuI CTGAAG 2 cut(s) 269, 801
AcyI GRCGYC 1 cut(s) 57
AfaI GTAC 2 cut(s) 26, 999
AfeI AGCGCT 1 cut(s) 795
AfiI CCNNNNNNNGG 1 cut(s) 125
AgsI TTSAA 4 cut(s) 70, 620, 734, 773
AhdI GACNNNNNGTC 1 cut(s) 634
AluBI AGCT 5 cut(s) 247, 271, 525, 819, 866
AluI AGCT 5 cut(s) 247, 271, 525, 819, 866
Alw21I GWGCWC 1 cut(s) 527
Alw26I GTCTC 2 cut(s) 457, 833
AlwI GGATC 2 cut(s) 220, 866
Aor51HI AGCGCT 1 cut(s) 795
AoxI GGCC 4 cut(s) 76, 180, 273, 296
ApeKI GCWGC 3 cut(s) 641, 791, 866
ApoI RAATTY 2 cut(s) 170, 734
AspA2I CCTAGG 1 cut(s) 299
AspLEI GCGC 5 cut(s) 59, 124, 126, 223, 796
AspS9I GGNCC 1 cut(s) 477
AvaII GGWCC 1 cut(s) 477
AvrII CCTAGG 1 cut(s) 299
BanI GGYRCC 1 cut(s) 56
BanII GRGCYC 1 cut(s) 527
BbsI GAAGAC 3 cut(s) 39, 147, 789
Bbv12I GWGCWC 1 cut(s) 527
BbvI GCAGC 3 cut(s) 653, 803, 853
BccI CCATC 2 cut(s) 710, 916
BceAI ACGGC 2 cut(s) 518, 702
BcgI CGANNNNNNTGC 2 cut(s) 728, 762
BcoDI GTCTC 2 cut(s) 457, 833
BfaI CTAG 3 cut(s) 192, 300, 755
BfmI CTRYAG 1 cut(s) 639
BfoI RGCGCY 2 cut(s) 60, 797
BfuAI ACCTGC 1 cut(s) 423
BlnI CCTAGG 1 cut(s) 299
Bme18I GGWCC 1 cut(s) 477
BmeRI GACNNNNNGTC 1 cut(s) 634
BmgT120I GGNCC 1 cut(s) 477
BmiI GGNNCC 4 cut(s) 58, 479, 512, 518
BmsI GCATC 3 cut(s) 736, 778, 902
BoxI GACNNNNGTC 1 cut(s) 206
BpiI GAAGAC 3 cut(s) 39, 147, 789
BpmI CTGGAG 1 cut(s) 169
BpuEI CTTGAG 1 cut(s) 1006
BsaHI GRCGYC 1 cut(s) 57
BsaJI CCNNGG 5 cut(s) 46, 79, 299, 482, 536
Bsc4I CCNNNNNNNGG 1 cut(s) 125
Bse1I ACTGG 1 cut(s) 229
Bse3DI GCAATG 1 cut(s) 888
BseDI CCNNGG 5 cut(s) 46, 79, 299, 482, 536
BseGI GGATG 2 cut(s) 721, 908
BseLI CCNNNNNNNGG 1 cut(s) 125
BseMI GCAATG 1 cut(s) 888
BseMII CTCAG 1 cut(s) 681
BseNI ACTGG 1 cut(s) 229
BsePI GCGCGC 1 cut(s) 122
BseXI GCAGC 3 cut(s) 653, 803, 853
Bsh1236I CGCG 3 cut(s) 48, 124, 126
BshFI GGCC 4 cut(s) 78, 182, 275, 298
BshNI GGYRCC 1 cut(s) 56
BsiHKAI GWGCWC 1 cut(s) 527
BsiSI CCGG 4 cut(s) 263, 276, 514, 520
BslFI GGGAC 1 cut(s) 463
BslI CCNNNNNNNGG 1 cut(s) 125
BsmAI GTCTC 2 cut(s) 457, 833
BsmBI CGTCTC 1 cut(s) 457
BsmFI GGGAC 1 cut(s) 463
BsnI GGCC 4 cut(s) 78, 182, 275, 298
Bsp1286I GDGCHC 1 cut(s) 527
Bsp143I GATC 3 cut(s) 225, 858, 1027
BspANI GGCC 4 cut(s) 78, 182, 275, 298
BspCNI CTCAG 1 cut(s) 682
BspFNI CGCG 3 cut(s) 48, 124, 126
BspHI TCATGA 2 cut(s) 162, 871
BspLI GGNNCC 4 cut(s) 58, 479, 512, 518
BspMAI CTGCAG 1 cut(s) 643
BspMI ACCTGC 1 cut(s) 423
BspPI GGATC 2 cut(s) 220, 866
BspQI GCTCTTC 1 cut(s) 551
BspT107I GGYRCC 1 cut(s) 56
BsrBI CCGCTC 1 cut(s) 856
BsrDI GCAATG 1 cut(s) 888
BsrI ACTGG 1 cut(s) 229
BssECI CCNNGG 5 cut(s) 46, 79, 299, 482, 536
BssHII GCGCGC 1 cut(s) 122
BssMI GATC 3 cut(s) 225, 858, 1027
BssNAI GTATAC 2 cut(s) 144, 1034
BssNI GRCGYC 1 cut(s) 57
BssT1I CCWWGG 1 cut(s) 299
Bst1107I GTATAC 2 cut(s) 144, 1034
Bst4CI ACNGT 1 cut(s) 926
Bst6I CTCTTC 3 cut(s) 245, 279, 551
BstACI GRCGYC 1 cut(s) 57
BstC8I GCNNGC 3 cut(s) 124, 219, 273
BstDEI CTNAG 1 cut(s) 690
BstDSI CCRYGG 1 cut(s) 46
BstF5I GGATG 2 cut(s) 721, 908
BstFNI CGCG 3 cut(s) 48, 124, 126
BstH2I RGCGCY 2 cut(s) 60, 797
BstHHI GCGC 5 cut(s) 59, 124, 126, 223, 796
BstKTI GATC 3 cut(s) 228, 861, 1030
BstMAI GTCTC 2 cut(s) 457, 833
BstMBI GATC 3 cut(s) 225, 858, 1027
BstMWI GCNNNNNNNGC 4 cut(s) 17, 54, 268, 686
BstPAI GACNNNNGTC 1 cut(s) 206
BstSFI CTRYAG 1 cut(s) 639
BstUI CGCG 3 cut(s) 48, 124, 126
BstV1I GCAGC 3 cut(s) 653, 803, 853
BstV2I GAAGAC 3 cut(s) 39, 147, 789
BstX2I RGATCY 1 cut(s) 225
BstXI CCANNNNNNTGG 1 cut(s) 712
BstYI RGATCY 1 cut(s) 225
BstZ17I GTATAC 2 cut(s) 144, 1034
BsuRI GGCC 4 cut(s) 78, 182, 275, 298
BtgI CCRYGG 1 cut(s) 46
BtsCI GGATG 2 cut(s) 721, 908
BtsIMutI CAGTG 1 cut(s) 931
BveI ACCTGC 1 cut(s) 423
Cac8I GCNNGC 3 cut(s) 124, 219, 273
CciI TCATGA 2 cut(s) 162, 871
CfoI GCGC 5 cut(s) 59, 124, 126, 223, 796
Cfr13I GGNCC 1 cut(s) 477
Cfr42I CCGCGG 1 cut(s) 49
Csp6I GTAC 2 cut(s) 25, 998
CspCI CAANNNNNGTGG 3 cut(s) 1001, 1028, 1036
CviAII CATG 3 cut(s) 163, 712, 872
CviQI GTAC 2 cut(s) 25, 998
DdeI CTNAG 1 cut(s) 690
DinI GGCGCC 1 cut(s) 58
DpnI GATC 3 cut(s) 227, 860, 1029
DpnII GATC 3 cut(s) 225, 858, 1027
DrdI GACNNNNNNGTC 1 cut(s) 471
DriI GACNNNNNGTC 1 cut(s) 634
DseDI GACNNNNNNGTC 1 cut(s) 471
EaeI YGGCCR 1 cut(s) 273
Eam1104I CTCTTC 3 cut(s) 245, 279, 551
Eam1105I GACNNNNNGTC 1 cut(s) 634
EarI CTCTTC 3 cut(s) 245, 279, 551
EciI GGCGGA 1 cut(s) 520
Ecl136II GAGCTC 1 cut(s) 525
Eco130I CCWWGG 1 cut(s) 299
Eco147I AGGCCT 2 cut(s) 78, 182
Eco24I GRGCYC 1 cut(s) 527
Eco47I GGWCC 1 cut(s) 477
Eco47III AGCGCT 1 cut(s) 795
Eco53kI GAGCTC 1 cut(s) 525
Eco57I CTGAAG 2 cut(s) 269, 801
EcoICRI GAGCTC 1 cut(s) 525
EcoRI GAATTC 1 cut(s) 734
EcoT14I CCWWGG 1 cut(s) 299
EcoT38I GRGCYC 1 cut(s) 527
EgeI GGCGCC 1 cut(s) 58
EheI GGCGCC 1 cut(s) 58
ErhI CCWWGG 1 cut(s) 299
Esp3I CGTCTC 1 cut(s) 457
FaeI CATG 3 cut(s) 166, 715, 875
FaiI YATR 9 cut(s) 144, 164, 378, 627, 713, 809, 873, 917, 1034
FaqI GGGAC 1 cut(s) 463
FatI CATG 3 cut(s) 162, 711, 871
FauI CCCGC 1 cut(s) 50
FblI GTMKAC 2 cut(s) 143, 1033
FokI GGATG 2 cut(s) 728, 895
FriOI GRGCYC 1 cut(s) 527
FspBI CTAG 3 cut(s) 192, 300, 755
GlaI GCGC 5 cut(s) 58, 123, 125, 222, 795
GsuI CTGGAG 1 cut(s) 169
HaeII RGCGCY 2 cut(s) 60, 797
HaeIII GGCC 4 cut(s) 78, 182, 275, 298
HapII CCGG 4 cut(s) 263, 276, 514, 520
HhaI GCGC 5 cut(s) 59, 124, 126, 223, 796
Hin1I GRCGYC 1 cut(s) 57
Hin1II CATG 3 cut(s) 166, 715, 875
Hin6I GCGC 5 cut(s) 57, 122, 124, 221, 794
HinP1I GCGC 5 cut(s) 57, 122, 124, 221, 794
HindIII AAGCTT 1 cut(s) 817
HinfI GANTC 8 cut(s) 66, 104, 235, 344, 446, 472, 487, 616
HpaII CCGG 4 cut(s) 263, 276, 514, 520
Hpy166II GTNNAC 2 cut(s) 144, 1034
Hpy188I TCNGA 8 cut(s) 103, 109, 240, 310, 451, 486, 492, 898
Hpy188III TCNNGA 3 cut(s) 163, 872, 985
Hpy8I GTNNAC 2 cut(s) 144, 1034
Hpy99I CGWCG 2 cut(s) 205, 532
HpyAV CCTTC 6 cut(s) 47, 169, 462, 571, 688, 988
HpyCH4III ACNGT 1 cut(s) 926
HpyCH4IV ACGT 1 cut(s) 930
HpyCH4V TGCA 5 cut(s) 641, 749, 791, 893, 960
HpyF10VI GCNNNNNNNGC 4 cut(s) 17, 54, 268, 686
HpyF3I CTNAG 1 cut(s) 690
HpySE526I ACGT 1 cut(s) 930
Hsp92I GRCGYC 1 cut(s) 57
Hsp92II CATG 3 cut(s) 166, 715, 875
HspAI GCGC 5 cut(s) 57, 122, 124, 221, 794
KasI GGCGCC 1 cut(s) 56
KspI CCGCGG 1 cut(s) 49
Kzo9I GATC 3 cut(s) 225, 858, 1027
LguI GCTCTTC 1 cut(s) 551
LmnI GCTCC 7 cut(s) 268, 363, 429, 510, 516, 522, 853
Lsp1109I GCAGC 3 cut(s) 653, 803, 853
LweI GCATC 3 cut(s) 736, 778, 902
MaeI CTAG 3 cut(s) 192, 300, 755
MaeII ACGT 1 cut(s) 930
MaeIII GTNAC 1 cut(s) 926
MalI GATC 3 cut(s) 227, 860, 1029
MbiI CCGCTC 1 cut(s) 856
MboI GATC 3 cut(s) 225, 858, 1027
MboII GAAGA 7 cut(s) 44, 147, 262, 268, 296, 568, 794
MfeI CAATTG 1 cut(s) 1045
MflI RGATCY 1 cut(s) 225
MhlI GDGCHC 1 cut(s) 527
MluCI AATT 5 cut(s) 170, 569, 611, 734, 1045
Mly113I GGCGCC 1 cut(s) 57
MlyI GAGTC 2 cut(s) 353, 481
MmeI TCCRAC 1 cut(s) 697
MspA1I CMGCKG 2 cut(s) 48, 644
MspI CCGG 4 cut(s) 263, 276, 514, 520
MunI CAATTG 1 cut(s) 1045
MvnI CGCG 3 cut(s) 48, 124, 126
MwoI GCNNNNNNNGC 4 cut(s) 17, 54, 268, 686
NarI GGCGCC 1 cut(s) 57
NdeII GATC 3 cut(s) 225, 858, 1027
NlaIII CATG 3 cut(s) 166, 715, 875
NlaIV GGNNCC 4 cut(s) 58, 479, 512, 518
NmeAIII GCCGAG 2 cut(s) 60, 561
NmuCI GTSAC 1 cut(s) 926
PagI TCATGA 2 cut(s) 162, 871
PauI GCGCGC 1 cut(s) 122
PceI AGGCCT 2 cut(s) 78, 182
PciSI GCTCTTC 1 cut(s) 551
PcsI WCGNNNNNNNCGW 2 cut(s) 137, 533
PfeI GAWTC 6 cut(s) 66, 104, 235, 446, 487, 616
PleI GAGTC 2 cut(s) 352, 480
PluTI GGCGCC 1 cut(s) 60
PpsI GAGTC 2 cut(s) 352, 480
PshAI GACNNNNGTC 1 cut(s) 206
Psp124BI GAGCTC 1 cut(s) 527
PspN4I GGNNCC 4 cut(s) 58, 479, 512, 518
PspPI GGNCC 1 cut(s) 477
PstI CTGCAG 1 cut(s) 643
PsuI RGATCY 1 cut(s) 225
PteI GCGCGC 1 cut(s) 122
RsaI GTAC 2 cut(s) 26, 999
RsaNI GTAC 2 cut(s) 25, 998
SacI GAGCTC 1 cut(s) 527
SacII CCGCGG 1 cut(s) 49
SapI GCTCTTC 1 cut(s) 551
Sau3AI GATC 3 cut(s) 225, 858, 1027
Sau96I GGNCC 1 cut(s) 477
SchI GAGTC 2 cut(s) 353, 481
SduI GDGCHC 1 cut(s) 527
SfaNI GCATC 3 cut(s) 736, 778, 902
SfcI CTRYAG 1 cut(s) 639
SfoI GGCGCC 1 cut(s) 58
Sfr303I CCGCGG 1 cut(s) 49
SgrBI CCGCGG 1 cut(s) 49
SinI GGWCC 1 cut(s) 477
SmlI CTYRAG 1 cut(s) 985
SmoI CTYRAG 1 cut(s) 985
Sse9I AATT 5 cut(s) 170, 569, 611, 734, 1045
SseBI AGGCCT 2 cut(s) 78, 182
SspDI GGCGCC 1 cut(s) 56
SspMI CTAG 3 cut(s) 192, 300, 755
SstI GAGCTC 1 cut(s) 527
StuI AGGCCT 2 cut(s) 78, 182
StyI CCWWGG 1 cut(s) 299
TaaI ACNGT 1 cut(s) 926
TaiI ACGT 1 cut(s) 933
TaqI TCGA 4 cut(s) 210, 233, 347, 738
TaqII GACCGA 1 cut(s) 465
TasI AATT 5 cut(s) 170, 569, 611, 734, 1045
TauI GCSGC 8 cut(s) 20, 23, 48, 51, 62, 295, 298, 535
TfiI GAWTC 6 cut(s) 66, 104, 235, 446, 487, 616
TscAI CASTG 1 cut(s) 931
TseFI GTSAC 1 cut(s) 926
TseI GCWGC 3 cut(s) 641, 791, 866
Tsp45I GTSAC 1 cut(s) 926
TspDTI ATGAA 2 cut(s) 151, 680
TspGWI ACGGA 2 cut(s) 218, 468
TspRI CASTG 1 cut(s) 931
VpaK11BI GGWCC 1 cut(s) 477
XapI RAATTY 2 cut(s) 170, 734
XmaJI CCTAGG 1 cut(s) 299
XmiI GTMKAC 2 cut(s) 143, 1033
XspI CTAG 3 cut(s) 192, 300, 755
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.