Rh7AG028500

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7A
OG0011067
Physical Location & Seq
Reverse (-)
1904902 .. 1908252
3351 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7AG028500.1

Sequence Viewer

Length: 813 bp
ATGGAGGAAGCAAAAGCGGCGGCGTACTACGAAGACCTAACCCGCCGCGGCGAAGGCGCCGCCAGATTCAAACAAGGGCTCGGCTTCTCATCGGCGAAGTCCGATTCCGAAAATGCCCCTGCGCGCGGTTCGGCGGTGGCGTATACTTCCTCGTCTTCCTTCATGAGCAAATTCGTCAAGGCCTCCAGCCCTAGCAAGACGACGGAGGTCGAAAAGCAAGCGCAGATCCAGTCGATTCAGAACAAGCTGAAGAGGAAGAAGCCGGAGGAGCTGGCCGGAGAGGAAGAGAAGCGGCGGCCTAGGGTTTCGGAGAGGGATAAGCGGAGTAGAAGCAGAGAGAGGGAGTCGAGGCGTAGGAGTAGGAGCAGAGAGAGGTATAGAGATAGGGAGAGAGATAGAGAGAGAAGCAGGAGGAGGAGGAGGAGGAGCAGGTCTGGGAGTGAATCGGACGGAGATAGGAGACGAAGGAGTCGGTCCCCTCGGAATCGGAGAAAGGAACGGCGGAGGAGCCGGAGCCGGAGCTCGTCGCCGCCGAGGGAGAGGCGTTTGGAGAAGAGCAGAGATAAATTGGAGAAGGAGAGGAATGGCGGTGGTGCTGACTATTACAAATTGATTCAAGGCTATGACAAAATGTCTGCAGCGGAGAGAGTAAAAGCGAAAATGAAACTCCAACTTGCTGAAACGGCTGAGAAGGACACAACCAAAGGCATGGATGGTTGGGAAAGATTTGAATTCGATAAAGATGCACCACTAGACGATGAGGAGATTGAAGGTAATCAATATAACCATGCTGTGTTGTTTACTAGAAAGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

270

Amino Acids

31.73

Weight (kDa)

10.59

Isoelectric Point (pI)

107.65

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0011067)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G48120 AT3G48120
fragaria_vesca FvH4_5g16290
malus_domestica MD06G1182300.v1.1 MD14G1188300.v1.1
prunus_persica Prupe.5G180400_v2.0.a1
pyrus_communis pycom06g16120
rosa_chinensis RchiOBHm_Chr7g0179841
rosa_laevigata RLG00000005319
rosa_multiflora Rmu_sc0001754.1_g000002 Rmu_sc0004156.1_g000013 Rmu_sc0035735.1_g000001
rosa_roxburghii Rroxscaffold_3G00273410
rosa_rugosa Rorug06G0428800
rosa_samantha Rh7AG028500 Rh7BG027500 Rh7BG027600 Rh7CG029400 Rh7DG028800
rosa_wichuraiana Rw7G002280

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 468
Acc36I ACCTGC 1 cut(s) 420
AccB1I GGYRCC 1 cut(s) 56
AccI GTMKAC 1 cut(s) 143
AccII CGCG 3 cut(s) 48, 124, 126
AclWI GGATC 1 cut(s) 220
AcoI YGGCCR 1 cut(s) 273
AcsI RAATTY 2 cut(s) 170, 731
AcuI CTGAAG 1 cut(s) 269
AcyI GRCGYC 1 cut(s) 57
AfaI GTAC 1 cut(s) 26
AfiI CCNNNNNNNGG 1 cut(s) 125
AgsI TTSAA 4 cut(s) 70, 617, 731, 770
AhdI GACNNNNNGTC 1 cut(s) 631
AluBI AGCT 3 cut(s) 247, 271, 522
AluI AGCT 3 cut(s) 247, 271, 522
Alw21I GWGCWC 1 cut(s) 524
Alw26I GTCTC 1 cut(s) 454
AlwI GGATC 1 cut(s) 220
AoxI GGCC 3 cut(s) 180, 273, 296
ApeKI GCWGC 1 cut(s) 638
ApoI RAATTY 2 cut(s) 170, 731
AspA2I CCTAGG 1 cut(s) 299
AspLEI GCGC 4 cut(s) 59, 124, 126, 223
AspS9I GGNCC 1 cut(s) 474
AvaII GGWCC 1 cut(s) 474
AvrII CCTAGG 1 cut(s) 299
BanI GGYRCC 1 cut(s) 56
BanII GRGCYC 2 cut(s) 81, 524
BbsI GAAGAC 2 cut(s) 39, 147
Bbv12I GWGCWC 1 cut(s) 524
BbvI GCAGC 1 cut(s) 650
BccI CCATC 1 cut(s) 707
BceAI ACGGC 2 cut(s) 515, 699
BcgI CGANNNNNNTGC 2 cut(s) 725, 759
BcoDI GTCTC 1 cut(s) 454
BfaI CTAG 4 cut(s) 192, 300, 752, 804
BfmI CTRYAG 1 cut(s) 636
BfoI RGCGCY 1 cut(s) 60
BfuAI ACCTGC 1 cut(s) 420
BisI GCNGC 9 cut(s) 18, 21, 46, 49, 60, 293, 296, 530, 639
BlnI CCTAGG 1 cut(s) 299
BlsI GCNGC 9 cut(s) 19, 22, 47, 50, 61, 294, 297, 531, 640
Bme18I GGWCC 1 cut(s) 474
BmeRI GACNNNNNGTC 1 cut(s) 631
BmgT120I GGNCC 1 cut(s) 474
BmiI GGNNCC 4 cut(s) 58, 476, 509, 515
BmsI GCATC 1 cut(s) 733
BoxI GACNNNNGTC 1 cut(s) 206
BpiI GAAGAC 2 cut(s) 39, 147
BpmI CTGGAG 1 cut(s) 169
BsaHI GRCGYC 1 cut(s) 57
BsaJI CCNNGG 4 cut(s) 46, 299, 479, 533
Bsc4I CCNNNNNNNGG 1 cut(s) 125
Bse1I ACTGG 1 cut(s) 229
BseDI CCNNGG 4 cut(s) 46, 299, 479, 533
BseGI GGATG 1 cut(s) 718
BseLI CCNNNNNNNGG 1 cut(s) 125
BseMII CTCAG 1 cut(s) 678
BseNI ACTGG 1 cut(s) 229
BsePI GCGCGC 1 cut(s) 122
BseRI GAGGAG 8 cut(s) 281, 427, 430, 433, 436, 439, 520, 776
BseXI GCAGC 1 cut(s) 650
Bsh1236I CGCG 3 cut(s) 48, 124, 126
BshFI GGCC 3 cut(s) 182, 275, 298
BshNI GGYRCC 1 cut(s) 56
BsiHKAI GWGCWC 1 cut(s) 524
BsiSI CCGG 4 cut(s) 263, 276, 511, 517
BslFI GGGAC 1 cut(s) 460
BslI CCNNNNNNNGG 1 cut(s) 125
BsmAI GTCTC 1 cut(s) 454
BsmBI CGTCTC 1 cut(s) 454
BsmFI GGGAC 1 cut(s) 460
BsnI GGCC 3 cut(s) 182, 275, 298
Bsp1286I GDGCHC 2 cut(s) 81, 524
Bsp143I GATC 1 cut(s) 225
BspANI GGCC 3 cut(s) 182, 275, 298
BspCNI CTCAG 1 cut(s) 679
BspFNI CGCG 3 cut(s) 48, 124, 126
BspHI TCATGA 1 cut(s) 162
BspLI GGNNCC 4 cut(s) 58, 476, 509, 515
BspMAI CTGCAG 1 cut(s) 640
BspMI ACCTGC 1 cut(s) 420
BspPI GGATC 1 cut(s) 220
BspQI GCTCTTC 1 cut(s) 548
BspT107I GGYRCC 1 cut(s) 56
BsrI ACTGG 1 cut(s) 229
BssECI CCNNGG 4 cut(s) 46, 299, 479, 533
BssHII GCGCGC 1 cut(s) 122
BssMI GATC 1 cut(s) 225
BssNAI GTATAC 1 cut(s) 144
BssNI GRCGYC 1 cut(s) 57
BssT1I CCWWGG 1 cut(s) 299
Bst1107I GTATAC 1 cut(s) 144
Bst6I CTCTTC 3 cut(s) 245, 279, 548
BstACI GRCGYC 1 cut(s) 57
BstC8I GCNNGC 3 cut(s) 124, 219, 273
BstDEI CTNAG 1 cut(s) 687
BstDSI CCRYGG 1 cut(s) 46
BstF5I GGATG 1 cut(s) 718
BstFNI CGCG 3 cut(s) 48, 124, 126
BstH2I RGCGCY 1 cut(s) 60
BstHHI GCGC 4 cut(s) 59, 124, 126, 223
BstKTI GATC 1 cut(s) 228
BstMAI GTCTC 1 cut(s) 454
BstMBI GATC 1 cut(s) 225
BstMWI GCNNNNNNNGC 4 cut(s) 17, 54, 268, 683
BstPAI GACNNNNGTC 1 cut(s) 206
BstSFI CTRYAG 1 cut(s) 636
BstUI CGCG 3 cut(s) 48, 124, 126
BstV1I GCAGC 1 cut(s) 650
BstV2I GAAGAC 2 cut(s) 39, 147
BstX2I RGATCY 1 cut(s) 225
BstXI CCANNNNNNTGG 1 cut(s) 709
BstYI RGATCY 1 cut(s) 225
BstZ17I GTATAC 1 cut(s) 144
BsuRI GGCC 3 cut(s) 182, 275, 298
BtgI CCRYGG 1 cut(s) 46
BtsCI GGATG 1 cut(s) 718
BveI ACCTGC 1 cut(s) 420
Cac8I GCNNGC 3 cut(s) 124, 219, 273
CciI TCATGA 1 cut(s) 162
CfoI GCGC 4 cut(s) 59, 124, 126, 223
Cfr13I GGNCC 1 cut(s) 474
Cfr42I CCGCGG 1 cut(s) 49
Csp6I GTAC 1 cut(s) 25
CviAII CATG 3 cut(s) 163, 709, 788
CviQI GTAC 1 cut(s) 25
DdeI CTNAG 1 cut(s) 687
DinI GGCGCC 1 cut(s) 58
DpnI GATC 1 cut(s) 227
DpnII GATC 1 cut(s) 225
DrdI GACNNNNNNGTC 1 cut(s) 468
DriI GACNNNNNGTC 1 cut(s) 631
DseDI GACNNNNNNGTC 1 cut(s) 468
EaeI YGGCCR 1 cut(s) 273
Eam1104I CTCTTC 3 cut(s) 245, 279, 548
Eam1105I GACNNNNNGTC 1 cut(s) 631
EarI CTCTTC 3 cut(s) 245, 279, 548
EciI GGCGGA 1 cut(s) 517
Ecl136II GAGCTC 1 cut(s) 522
Eco130I CCWWGG 1 cut(s) 299
Eco147I AGGCCT 1 cut(s) 182
Eco24I GRGCYC 2 cut(s) 81, 524
Eco47I GGWCC 1 cut(s) 474
Eco53kI GAGCTC 1 cut(s) 522
Eco57I CTGAAG 1 cut(s) 269
EcoICRI GAGCTC 1 cut(s) 522
EcoRI GAATTC 1 cut(s) 731
EcoT14I CCWWGG 1 cut(s) 299
EcoT38I GRGCYC 2 cut(s) 81, 524
EgeI GGCGCC 1 cut(s) 58
EheI GGCGCC 1 cut(s) 58
ErhI CCWWGG 1 cut(s) 299
Esp3I CGTCTC 1 cut(s) 454
FaeI CATG 3 cut(s) 166, 712, 791
FaiI YATR 7 cut(s) 144, 164, 378, 624, 710, 783, 789
FaqI GGGAC 1 cut(s) 460
FatI CATG 3 cut(s) 162, 708, 787
FauI CCCGC 1 cut(s) 50
FblI GTMKAC 1 cut(s) 143
Fnu4HI GCNGC 9 cut(s) 18, 21, 46, 49, 60, 293, 296, 530, 639
FokI GGATG 1 cut(s) 725
FriOI GRGCYC 2 cut(s) 81, 524
Fsp4HI GCNGC 9 cut(s) 18, 21, 46, 49, 60, 293, 296, 530, 639
FspBI CTAG 4 cut(s) 192, 300, 752, 804
GlaI GCGC 4 cut(s) 58, 123, 125, 222
GluI GCNGC 9 cut(s) 18, 21, 46, 49, 60, 293, 296, 530, 639
GsuI CTGGAG 1 cut(s) 169
HaeII RGCGCY 1 cut(s) 60
HaeIII GGCC 3 cut(s) 182, 275, 298
HapII CCGG 4 cut(s) 263, 276, 511, 517
HhaI GCGC 4 cut(s) 59, 124, 126, 223
Hin1I GRCGYC 1 cut(s) 57
Hin1II CATG 3 cut(s) 166, 712, 791
Hin6I GCGC 4 cut(s) 57, 122, 124, 221
HinP1I GCGC 4 cut(s) 57, 122, 124, 221
HinfI GANTC 8 cut(s) 66, 104, 235, 344, 443, 469, 484, 613
HpaII CCGG 4 cut(s) 263, 276, 511, 517
Hpy166II GTNNAC 2 cut(s) 144, 801
Hpy188I TCNGA 7 cut(s) 103, 109, 240, 310, 448, 483, 489
Hpy188III TCNNGA 1 cut(s) 163
Hpy8I GTNNAC 2 cut(s) 144, 801
Hpy99I CGWCG 2 cut(s) 205, 529
HpyAV CCTTC 6 cut(s) 47, 169, 459, 568, 685, 764
HpyCH4V TGCA 2 cut(s) 638, 746
HpyF10VI GCNNNNNNNGC 4 cut(s) 17, 54, 268, 683
HpyF3I CTNAG 1 cut(s) 687
Hsp92I GRCGYC 1 cut(s) 57
Hsp92II CATG 3 cut(s) 166, 712, 791
HspAI GCGC 4 cut(s) 57, 122, 124, 221
KasI GGCGCC 1 cut(s) 56
KspI CCGCGG 1 cut(s) 49
Kzo9I GATC 1 cut(s) 225
LguI GCTCTTC 1 cut(s) 548
LmnI GCTCC 6 cut(s) 268, 363, 426, 507, 513, 519
Lsp1109I GCAGC 1 cut(s) 650
LweI GCATC 1 cut(s) 733
MaeI CTAG 4 cut(s) 192, 300, 752, 804
MalI GATC 1 cut(s) 227
MboI GATC 1 cut(s) 225
MboII GAAGA 6 cut(s) 44, 147, 262, 268, 296, 565
MflI RGATCY 1 cut(s) 225
MhlI GDGCHC 2 cut(s) 81, 524
MluCI AATT 4 cut(s) 170, 566, 608, 731
Mly113I GGCGCC 1 cut(s) 57
MlyI GAGTC 2 cut(s) 353, 478
MmeI TCCRAC 1 cut(s) 694
MspA1I CMGCKG 2 cut(s) 48, 641
MspI CCGG 4 cut(s) 263, 276, 511, 517
MvnI CGCG 3 cut(s) 48, 124, 126
MwoI GCNNNNNNNGC 4 cut(s) 17, 54, 268, 683
NarI GGCGCC 1 cut(s) 57
NdeII GATC 1 cut(s) 225
NlaIII CATG 3 cut(s) 166, 712, 791
NlaIV GGNNCC 4 cut(s) 58, 476, 509, 515
NmeAIII GCCGAG 2 cut(s) 60, 558
PagI TCATGA 1 cut(s) 162
PauI GCGCGC 1 cut(s) 122
PceI AGGCCT 1 cut(s) 182
PciSI GCTCTTC 1 cut(s) 548
PcsI WCGNNNNNNNCGW 2 cut(s) 137, 530
PfeI GAWTC 6 cut(s) 66, 104, 235, 443, 484, 613
PkrI GCNGC 9 cut(s) 19, 22, 47, 50, 61, 294, 297, 531, 640
PleI GAGTC 2 cut(s) 352, 477
PluTI GGCGCC 1 cut(s) 60
PpsI GAGTC 2 cut(s) 352, 477
PshAI GACNNNNGTC 1 cut(s) 206
Psp124BI GAGCTC 1 cut(s) 524
PspN4I GGNNCC 4 cut(s) 58, 476, 509, 515
PspPI GGNCC 1 cut(s) 474
PstI CTGCAG 1 cut(s) 640
PsuI RGATCY 1 cut(s) 225
PteI GCGCGC 1 cut(s) 122
RsaI GTAC 1 cut(s) 26
RsaNI GTAC 1 cut(s) 25
SacI GAGCTC 1 cut(s) 524
SacII CCGCGG 1 cut(s) 49
SapI GCTCTTC 1 cut(s) 548
SatI GCNGC 9 cut(s) 18, 21, 46, 49, 60, 293, 296, 530, 639
Sau3AI GATC 1 cut(s) 225
Sau96I GGNCC 1 cut(s) 474
SchI GAGTC 2 cut(s) 353, 478
SduI GDGCHC 2 cut(s) 81, 524
SetI ASST 8 cut(s) 39, 210, 249, 273, 377, 434, 524, 775
SfaNI GCATC 1 cut(s) 733
SfcI CTRYAG 1 cut(s) 636
SfoI GGCGCC 1 cut(s) 58
Sfr303I CCGCGG 1 cut(s) 49
SgrBI CCGCGG 1 cut(s) 49
SinI GGWCC 1 cut(s) 474
Sse9I AATT 4 cut(s) 170, 566, 608, 731
SseBI AGGCCT 1 cut(s) 182
SspDI GGCGCC 1 cut(s) 56
SspMI CTAG 4 cut(s) 192, 300, 752, 804
SstI GAGCTC 1 cut(s) 524
StuI AGGCCT 1 cut(s) 182
StyI CCWWGG 1 cut(s) 299
TaqI TCGA 4 cut(s) 210, 233, 347, 735
TaqII GACCGA 1 cut(s) 462
TasI AATT 4 cut(s) 170, 566, 608, 731
TauI GCSGC 8 cut(s) 20, 23, 48, 51, 62, 295, 298, 532
TfiI GAWTC 6 cut(s) 66, 104, 235, 443, 484, 613
TseI GCWGC 1 cut(s) 638
TspDTI ATGAA 2 cut(s) 151, 677
TspGWI ACGGA 2 cut(s) 218, 465
VpaK11BI GGWCC 1 cut(s) 474
XapI RAATTY 2 cut(s) 170, 731
XmaJI CCTAGG 1 cut(s) 299
XmiI GTMKAC 1 cut(s) 143
XspI CTAG 4 cut(s) 192, 300, 752, 804
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.