Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0011824

Physical Location & Seq

Genomic Coordinates Forward (+)

17855112 .. 17858120

Gene Structure 3009 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT3G48230.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1122 bp

ATGATCTTCTCAATAATAATGGCGGTTCTTTTGGCCCAAGCTTCAAGTTTGCCAAAGAAGACTGTCCAGAGTTCGGATGGGGATATTGTAGACTGCTTCGACGTGAGAGATCAGCCTTCATTGGATCACCCACTATTGCAGAATCATGAAATTCAGGGCGCACCCGCCACAGGATTACCATATATGATCAACAAAGCGGGAAAAAGAAGAGTTTGGCAGGTTTGGAACCAAAACGGCACCAGCTGTCCTGACGAAACTATACCCATAAGACGTAGCGTGGTCGGGGCTAAAAGATTTAAGAAAAAACATTGGACAGATGTTCGAGTCAATCGCCGAACAGTTCCATACGCCGCTGAGGAGGGACACGAGTACGCGATTGGAGAGGTGGTATATCTGCGGGGAATATATGGAACAGTGGCAACTATGAACGTTTGGAATCCATCTGTAGAACATGGAACAAACGAATTTAGTTTGTCCCAAATTTGGCTCGTCGCTGGACATTACAACGATTCCGACCTCAACACAGTCGAGGCTGGTTGGCAGGTTTTCCCGGATCATTATCATGACAGCCAGCCACGACTTTTCGTCTATTGGACGAAGGACACATATCAGAAGACAGGGTGTCTCAACCTCGAGTGCCCTGGTTTTGTTCAAGTCACTAGCGAGTTTGCCATTGGCAGTGCATTCTCTCCTACATCTTCTTACGGCGGCAGCCAGTACGACATCACGATGTACATATGGAAGGATACTAAAGATGGCAACTGGTGGCTGAGCATTGACTCCTCAGTGATTGGGTATTGGCCGGCGAGGCTTTTCACGCATTTAGCTCACGGGCCGGCGACGTTGGTACAGTGGGGAGGCGAGATTGTAAACTCTCGCAGCTATGGCCAGCACACTACCACACAGATGGGCTCGGGACATTTTGCAGAGGAAGGCTTCGGCAAAGCAGGTAGCTTCCGAAACCTGAAAATTATTGACTACCTCTCGTACATGCAACCAGTCCAAGAGTTCATCCTGCAAACGAAGAACCCCACATGTTATACTGCCATAAAGGGATACAGCGAGGAGTGGGGGAGTCATTTCTACTACGGCGGACCGGGATATAACGCCCTGTGTCCATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Neprosin Neprosin_AP

Protein Analysis

373

Amino Acids

42.0

Weight (kDa)

6.22

Isoelectric Point (pI)

42.53

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Neprosin_AP	PF14365	21 - 127	8.2e-24	Neprosin activation peptide
Neprosin	PF03080	154 - 366	1.3e-83	Neprosin

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0011824)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G48230 AT5G19170
fragaria_vesca	FvH4_2g32290
prunus_persica	Prupe.1G415600_v2.0.a1 Prupe.1G415700_v2.0.a1 Prupe.1G415700_v2.0.a1 Prupe.1G415800_v2.0.a1
rosa_chinensis	RchiOBHm_Chr6g0310411
rosa_laevigata	RLG00000010484
rosa_multiflora	Rmu_co8348255.1_g000001 Rmu_sc0002896.1_g000001
rosa_roxburghii	Rroxscaffold_7G00158540
rosa_rugosa	Rorug06G0380000
rosa_samantha	Rh6AG494000 Rh6BG503700 Rh6CG508900 Rh6DG494900
rosa_wichuraiana	Rw2G024720 Rw6G042980

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	3 cut(s)	208, 532, 938
AccB1I	GGYRCC	1 cut(s)	236
AccI	GTMKAC	1 cut(s)	90
AccII	CGCG	1 cut(s)	374
AciI	CCGC	7 cut(s)	23, 165, 197, 351, 397, 708, 1092
AclI	AACGTT	1 cut(s)	429
AclWI	GGATC	2 cut(s)	132, 561
AcoI	YGGCCR	2 cut(s)	800, 886
AcsI	RAATTY	3 cut(s)	150, 464, 480
AfaI	GTAC	5 cut(s)	371, 719, 734, 849, 989
AfiI	CCNNNNNNNGG	3 cut(s)	73, 170, 483
AflIII	ACRYGT	1 cut(s)	1034
AgsI	TTSAA	2 cut(s)	45, 653
AhdI	GACNNNNNGTC	2 cut(s)	584, 621
AjiI	CACGTC	1 cut(s)	103
AjnI	CCWGG	1 cut(s)	640
AluBI	AGCT	5 cut(s)	41, 243, 827, 882, 954
AluI	AGCT	5 cut(s)	41, 243, 827, 882, 954
Alw26I	GTCTC	1 cut(s)	629
AlwI	GGATC	2 cut(s)	132, 561
Ama87I	CYCGRG	2 cut(s)	632, 913
AoxI	GGCC	4 cut(s)	33, 800, 833, 886
ApeKI	GCWGC	2 cut(s)	711, 879
ApoI	RAATTY	3 cut(s)	150, 464, 480
AspLEI	GCGC	1 cut(s)	161
AspS9I	GGNCC	3 cut(s)	34, 833, 1094
AsuC2I	CCSGG	2 cut(s)	551, 1098
AsuHPI	GGTGA	1 cut(s)	119
AvaI	CYCGRG	2 cut(s)	632, 913
AvaII	GGWCC	1 cut(s)	1094
BaeGI	GKGCMC	1 cut(s)	641
BalI	TGGCCA	1 cut(s)	888
BanI	GGYRCC	1 cut(s)	236
BanII	GRGCYC	1 cut(s)	914
BauI	CACGAG	1 cut(s)	365
BbsI	GAAGAC	2 cut(s)	65, 620
BbvCI	CCTCAGC	1 cut(s)	354
BbvI	GCAGC	2 cut(s)	723, 891
BccI	CCATC	4 cut(s)	71, 448, 749, 901
BceAI	ACGGC	3 cut(s)	250, 721, 1105
BciT130I	CCWGG	1 cut(s)	642
BciVI	GTATCC	2 cut(s)	739, 1049
BclI	TGATCA	1 cut(s)	186
BcnI	CCSGG	2 cut(s)	551, 1098
BcoDI	GTCTC	1 cut(s)	629
BfaI	CTAG	1 cut(s)	660
BfmI	CTRYAG	1 cut(s)	444
BfuAI	ACCTGC	3 cut(s)	208, 532, 938
BfuI	GTATCC	2 cut(s)	739, 1049
BglI	GCCNNNNNGGC	1 cut(s)	808
BisI	GCNGC	4 cut(s)	351, 709, 712, 880
BlpI	GCTNAGC	1 cut(s)	770
BlsI	GCNGC	4 cut(s)	352, 710, 713, 881
Bme1390I	CCNGG	3 cut(s)	551, 642, 1098
Bme18I	GGWCC	1 cut(s)	1094
BmeRI	GACNNNNNGTC	2 cut(s)	584, 621
BmeT110I	CYCGRG	2 cut(s)	632, 913
BmgBI	CACGTC	1 cut(s)	103
BmgT120I	GGNCC	3 cut(s)	34, 833, 1094
BmiI	GGNNCC	2 cut(s)	227, 238
BmrFI	CCNGG	3 cut(s)	551, 642, 1098
BpiI	GAAGAC	2 cut(s)	65, 620
Bpu10I	CCTNAGC	1 cut(s)	354
Bpu1102I	GCTNAGC	1 cut(s)	770
BpuMI	CCSGG	2 cut(s)	551, 1098
BsaBI	GATNNNNATC	1 cut(s)	558
BsaJI	CCNNGG	1 cut(s)	640
BsaXI	ACNNNNNCTCC	2 cut(s)	372, 402
Bsc4I	CCNNNNNNNGG	3 cut(s)	73, 170, 483
Bse118I	RCCGGY	2 cut(s)	802, 835
Bse1I	ACTGG	3 cut(s)	715, 767, 998
Bse8I	GATNNNNATC	1 cut(s)	558
BseBI	CCWGG	1 cut(s)	642
BseDI	CCNNGG	1 cut(s)	640
BseGI	GGATG	2 cut(s)	82, 1011
BseJI	GATNNNNATC	1 cut(s)	558
BseLI	CCNNNNNNNGG	3 cut(s)	73, 170, 483
BseMII	CTCAG	3 cut(s)	345, 761, 798
BseNI	ACTGG	3 cut(s)	715, 767, 998
BseRI	GAGGAG	3 cut(s)	371, 772, 1079
BseSI	GKGCMC	1 cut(s)	641
BseXI	GCAGC	2 cut(s)	723, 891
Bsh1236I	CGCG	1 cut(s)	374
BshFI	GGCC	4 cut(s)	35, 802, 835, 888
BshNI	GGYRCC	1 cut(s)	236
BsiHKCI	CYCGRG	2 cut(s)	632, 913
BsiSI	CCGG	4 cut(s)	551, 803, 836, 1097
BslFI	GGGAC	3 cut(s)	375, 460, 930
BslI	CCNNNNNNNGG	3 cut(s)	73, 170, 483
BsmAI	GTCTC	1 cut(s)	629
BsmFI	GGGAC	3 cut(s)	375, 460, 930
BsmI	GAATGC	1 cut(s)	683
BsnI	GGCC	4 cut(s)	35, 802, 835, 888
BsoBI	CYCGRG	2 cut(s)	632, 913
Bsp1286I	GDGCHC	2 cut(s)	641, 914
Bsp1407I	TGTACA	1 cut(s)	732
Bsp143I	GATC	5 cut(s)	3, 109, 124, 186, 553
Bsp1720I	GCTNAGC	1 cut(s)	770
BspACI	CCGC	7 cut(s)	23, 165, 197, 351, 397, 708, 1092
BspANI	GGCC	4 cut(s)	35, 802, 835, 888
BspCNI	CTCAG	3 cut(s)	346, 762, 797
BspFNI	CGCG	1 cut(s)	374
BspHI	TCATGA	2 cut(s)	145, 562
BspLI	GGNNCC	2 cut(s)	227, 238
BspMI	ACCTGC	3 cut(s)	208, 532, 938
BspPI	GGATC	2 cut(s)	132, 561
BspT107I	GGYRCC	1 cut(s)	236
BsrFI	RCCGGY	2 cut(s)	802, 835
BsrGI	TGTACA	1 cut(s)	732
BsrI	ACTGG	3 cut(s)	715, 767, 998
BssAI	RCCGGY	2 cut(s)	802, 835
BssECI	CCNNGG	1 cut(s)	640
BssMI	GATC	5 cut(s)	3, 109, 124, 186, 553
BssSI	CACGAG	1 cut(s)	365
Bst2BI	CACGAG	1 cut(s)	365
Bst2UI	CCWGG	1 cut(s)	642
Bst4CI	ACNGT	5 cut(s)	64, 340, 415, 526, 852
Bst6I	CTCTTC	1 cut(s)	202
BstAUI	TGTACA	1 cut(s)	732
BstC8I	GCNNGC	4 cut(s)	572, 804, 837, 890
BstDEI	CTNAG	3 cut(s)	354, 770, 784
BstF5I	GGATG	2 cut(s)	82, 1011
BstFNI	CGCG	1 cut(s)	374
BstHHI	GCGC	1 cut(s)	161
BstKTI	GATC	5 cut(s)	6, 112, 127, 189, 556
BstMAI	GTCTC	1 cut(s)	629
BstMBI	GATC	5 cut(s)	3, 109, 124, 186, 553
BstMWI	GCNNNNNNNGC	3 cut(s)	808, 817, 885
BstNI	CCWGG	1 cut(s)	642
BstNSI	RCATGY	2 cut(s)	994, 1038
BstSCI	CCNGG	3 cut(s)	549, 640, 1096
BstSFI	CTRYAG	1 cut(s)	444
BstSLI	GKGCMC	1 cut(s)	641
BstUI	CGCG	1 cut(s)	374
BstV1I	GCAGC	2 cut(s)	723, 891
BstV2I	GAAGAC	2 cut(s)	65, 620
BstXI	CCANNNNNNTGG	1 cut(s)	907
BsuI	GTATCC	2 cut(s)	739, 1049
BsuRI	GGCC	4 cut(s)	35, 802, 835, 888
BtrI	CACGTC	1 cut(s)	103
BtsCI	GGATG	2 cut(s)	82, 1011
BtsI	GCAGTG	1 cut(s)	685
BtsIMutI	CAGTG	4 cut(s)	420, 685, 792, 857
BveI	ACCTGC	3 cut(s)	208, 532, 938
Cac8I	GCNNGC	4 cut(s)	572, 804, 837, 890
CciI	TCATGA	2 cut(s)	145, 562
CfoI	GCGC	1 cut(s)	161
Cfr10I	RCCGGY	2 cut(s)	802, 835
Cfr13I	GGNCC	3 cut(s)	34, 833, 1094
CpoI	CGGWCCG	1 cut(s)	1094
Csp6I	GTAC	5 cut(s)	370, 718, 733, 848, 988
CspI	CGGWCCG	1 cut(s)	1094
CviAII	CATG	5 cut(s)	146, 452, 563, 991, 1035
CviQI	GTAC	5 cut(s)	370, 718, 733, 848, 988
DdeI	CTNAG	3 cut(s)	354, 770, 784
DpnI	GATC	5 cut(s)	5, 111, 126, 188, 555
DpnII	GATC	5 cut(s)	3, 109, 124, 186, 553
DriI	GACNNNNNGTC	2 cut(s)	584, 621
EaeI	YGGCCR	2 cut(s)	800, 886
Eam1104I	CTCTTC	1 cut(s)	202
Eam1105I	GACNNNNNGTC	2 cut(s)	584, 621
EarI	CTCTTC	1 cut(s)	202
EciI	GGCGGA	1 cut(s)	1107
Eco24I	GRGCYC	1 cut(s)	914
Eco47I	GGWCC	1 cut(s)	1094
Eco88I	CYCGRG	2 cut(s)	632, 913
EcoRII	CCWGG	1 cut(s)	640
EcoT38I	GRGCYC	1 cut(s)	914
FaeI	CATG	5 cut(s)	149, 455, 566, 994, 1038
FaqI	GGGAC	3 cut(s)	375, 460, 930
FatI	CATG	5 cut(s)	145, 451, 562, 990, 1034
FauI	CCCGC	3 cut(s)	172, 190, 390
FauNDI	CATATG	1 cut(s)	737
FbaI	TGATCA	1 cut(s)	186
FblI	GTMKAC	1 cut(s)	90
Fnu4HI	GCNGC	4 cut(s)	351, 709, 712, 880
FokI	GGATG	2 cut(s)	89, 998
FriOI	GRGCYC	1 cut(s)	914
Fsp4HI	GCNGC	4 cut(s)	351, 709, 712, 880
FspBI	CTAG	1 cut(s)	660
GlaI	GCGC	1 cut(s)	160
GluI	GCNGC	4 cut(s)	351, 709, 712, 880
HaeIII	GGCC	4 cut(s)	35, 802, 835, 888
HapII	CCGG	4 cut(s)	551, 803, 836, 1097
HhaI	GCGC	1 cut(s)	161
Hin1II	CATG	5 cut(s)	149, 455, 566, 994, 1038
Hin6I	GCGC	1 cut(s)	159
HinP1I	GCGC	1 cut(s)	159
HindIII	AAGCTT	1 cut(s)	39
HinfI	GANTC	6 cut(s)	142, 324, 436, 509, 779, 1075
HpaII	CCGG	4 cut(s)	551, 803, 836, 1097
HphI	GGTGA	1 cut(s)	119
Hpy166II	GTNNAC	2 cut(s)	91, 871
Hpy188I	TCNGA	4 cut(s)	76, 514, 612, 959
Hpy188III	TCNNGA	6 cut(s)	67, 146, 248, 563, 727, 915
Hpy8I	GTNNAC	2 cut(s)	91, 871
Hpy99I	CGWCG	3 cut(s)	104, 494, 844
HpyAV	CCTTC	4 cut(s)	126, 592, 736, 926
HpyCH4III	ACNGT	5 cut(s)	64, 340, 415, 526, 852
HpyCH4IV	ACGT	4 cut(s)	102, 271, 429, 842
HpyCH4V	TGCA	5 cut(s)	139, 683, 926, 994, 1018
HpyF10VI	GCNNNNNNNGC	3 cut(s)	808, 817, 885
HpyF3I	CTNAG	3 cut(s)	354, 770, 784
HpySE526I	ACGT	4 cut(s)	102, 271, 429, 842
Hsp92II	CATG	5 cut(s)	149, 455, 566, 994, 1038
HspAI	GCGC	1 cut(s)	159
KroI	GCCGGC	2 cut(s)	802, 835
KroNI	GCCGGC	2 cut(s)	804, 837
Ksp22I	TGATCA	1 cut(s)	186
Kzo9I	GATC	5 cut(s)	3, 109, 124, 186, 553
Lsp1109I	GCAGC	2 cut(s)	723, 891
MaeI	CTAG	1 cut(s)	660
MaeII	ACGT	4 cut(s)	102, 271, 429, 842
MaeIII	GTNAC	1 cut(s)	655
MalI	GATC	5 cut(s)	5, 111, 126, 188, 555
MboI	GATC	5 cut(s)	3, 109, 124, 186, 553
MboII	GAAGA	5 cut(s)	70, 219, 625, 690, 1036
MhlI	GDGCHC	2 cut(s)	641, 914
MlsI	TGGCCA	1 cut(s)	888
MluCI	AATT	4 cut(s)	150, 464, 480, 969
MluNI	TGGCCA	1 cut(s)	888
MlyI	GAGTC	3 cut(s)	333, 773, 1084
MmeI	TCCRAC	1 cut(s)	537
Mox20I	TGGCCA	1 cut(s)	888
MroNI	GCCGGC	2 cut(s)	802, 835
MscI	TGGCCA	1 cut(s)	888
MseI	TTAA	1 cut(s)	297
MslI	CAYNNNNRTG	3 cut(s)	561, 728, 905
Msp20I	TGGCCA	1 cut(s)	888
MspA1I	CMGCKG	2 cut(s)	243, 353
MspI	CCGG	4 cut(s)	551, 803, 836, 1097
MspR9I	CCNGG	3 cut(s)	551, 642, 1098
Mva1269I	GAATGC	1 cut(s)	683
MvaI	CCWGG	1 cut(s)	642
MvnI	CGCG	1 cut(s)	374
MwoI	GCNNNNNNNGC	3 cut(s)	808, 817, 885
NaeI	GCCGGC	2 cut(s)	804, 837
NciI	CCSGG	2 cut(s)	551, 1098
NdeI	CATATG	1 cut(s)	737
NdeII	GATC	5 cut(s)	3, 109, 124, 186, 553
NgoMIV	GCCGGC	2 cut(s)	802, 835
NlaIII	CATG	5 cut(s)	149, 455, 566, 994, 1038
NlaIV	GGNNCC	2 cut(s)	227, 238
NmuCI	GTSAC	1 cut(s)	655
NspI	RCATGY	2 cut(s)	994, 1038
PaeR7I	CTCGAG	1 cut(s)	632
PagI	TCATGA	2 cut(s)	145, 562
PciI	ACATGT	1 cut(s)	1034
PctI	GAATGC	1 cut(s)	683
PdiI	GCCGGC	2 cut(s)	804, 837
PfeI	GAWTC	3 cut(s)	142, 436, 509
PfoI	TCCNGGA	1 cut(s)	549
PkrI	GCNGC	4 cut(s)	352, 710, 713, 881
PleI	GAGTC	3 cut(s)	332, 773, 1083
PpsI	GAGTC	3 cut(s)	332, 773, 1083
PscI	ACATGT	1 cut(s)	1034
Psp1406I	AACGTT	1 cut(s)	429
Psp6I	CCWGG	1 cut(s)	640
PspGI	CCWGG	1 cut(s)	640
PspN4I	GGNNCC	2 cut(s)	227, 238
PspPI	GGNCC	3 cut(s)	34, 833, 1094
PspXI	VCTCGAGB	1 cut(s)	632
PvuII	CAGCTG	1 cut(s)	243
RsaI	GTAC	5 cut(s)	371, 719, 734, 849, 989
RsaNI	GTAC	5 cut(s)	370, 718, 733, 848, 988
RseI	CAYNNNNRTG	3 cut(s)	561, 728, 905
Rsr2I	CGGWCCG	1 cut(s)	1094
RsrII	CGGWCCG	1 cut(s)	1094
SaqAI	TTAA	1 cut(s)	297
SatI	GCNGC	4 cut(s)	351, 709, 712, 880
Sau3AI	GATC	5 cut(s)	3, 109, 124, 186, 553
Sau96I	GGNCC	3 cut(s)	34, 833, 1094
SchI	GAGTC	3 cut(s)	333, 773, 1084
ScrFI	CCNGG	3 cut(s)	551, 642, 1098
SduI	GDGCHC	2 cut(s)	641, 914
SfcI	CTRYAG	1 cut(s)	444
Sfr274I	CTCGAG	1 cut(s)	632
SinI	GGWCC	1 cut(s)	1094
SlaI	CTCGAG	1 cut(s)	632
SmiMI	CAYNNNNRTG	3 cut(s)	561, 728, 905
SmlI	CTYRAG	1 cut(s)	632
SmoI	CTYRAG	1 cut(s)	632
Sse9I	AATT	4 cut(s)	150, 464, 480, 969
SsiI	CCGC	7 cut(s)	23, 165, 197, 351, 397, 708, 1092
SspMI	CTAG	1 cut(s)	660
StyD4I	CCNGG	3 cut(s)	549, 640, 1096
TaaI	ACNGT	5 cut(s)	64, 340, 415, 526, 852
TaiI	ACGT	4 cut(s)	105, 274, 432, 845
TaqI	TCGA	4 cut(s)	99, 322, 528, 633
TasI	AATT	4 cut(s)	150, 464, 480, 969
TatI	WGTACW	1 cut(s)	732
TauI	GCSGC	2 cut(s)	353, 711
TfiI	GAWTC	3 cut(s)	142, 436, 509
Tru1I	TTAA	1 cut(s)	297
Tru9I	TTAA	1 cut(s)	297
TscAI	CASTG	4 cut(s)	420, 685, 792, 857
TseFI	GTSAC	1 cut(s)	655
TseI	GCWGC	2 cut(s)	711, 879
Tsp45I	GTSAC	1 cut(s)	655
TspDTI	ATGAA	4 cut(s)	108, 162, 440, 1000
TspRI	CASTG	4 cut(s)	420, 685, 792, 857
VpaK11BI	GGWCC	1 cut(s)	1094
XapI	RAATTY	3 cut(s)	150, 464, 480
XceI	RCATGY	2 cut(s)	994, 1038
XcmI	CCANNNNNNNNNTGG	1 cut(s)	74
XhoI	CTCGAG	1 cut(s)	632
XmiI	GTMKAC	1 cut(s)	90
XspI	CTAG	1 cut(s)	660

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.