Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb2

Orthogroup ID

OG0011824

Physical Location & Seq

Genomic Coordinates Forward (+)

24514931 .. 24517338

Gene Structure 2408 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_2g32290.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1308 bp

ATGGGGAGACAGTTGAGTTGGGGTGGCCTGATTAGATTGAGGGGAATGGTAATTGTTCTGGGAGTTGCTCTAATTGGATATTTTGGGGTTCTTGTGGAGGGTAACATGTTCTCTAAACACAAGGTTTTGGAAGTTGACAGAAAATTAAGCCAACTTAGAAAACCTGCAGTTAAAAGCATTCAGAGTGAAGATGGTGATATCATCGATTGCATTGACGTTTACAAGCAGCCAGCGTTGGATCATCCTGCTCTCAAAAACCATATTATCCAGATGGCACCTAGTTATGATCCGACAAAGGAGACAGAATCGACAACGACCAAGTTCGAAAGACTAGAGAGGAAGAGGAACTCTTCCATGATGGTGACACAACCATGGAAGAAGAATGGAAGCTGTCCGGAAGGAACAATCCCGGTGCGAAGAATCAGAAAAGAGGACCTGCTCCGAGCTAGCTCGGTTGAGGCCTACGGAAGGAAGACGCATACCTCTTCTCGTCCTCGTGTTTTGCATGACGAGTCTAGTACTAGTGACAGCAACAGAACTGTGTACCTTCAACAAGCAAATCACTCGAAGGCGATACTGCTTACAGAAGGGTACAGATATAATGGAGCCAAAGGAGATATCAAAGTTTGGACTCCTAACGTTGATTTTGACGATGACTACTCTACTTCTCATGTTTGCCTCATCAATGGTCCTTATTGGGCATTTGAGAGTGTTGAATCTGGATGGGCGGTGAATCCTACTGTATATGGAGATAGACAAACTCGATTTATGGTCTATTGGACAGTCGATGGTTCGCAGAAAACAGGTTGCTTTGATCTCACTTGTCCTGGATTTGTTCAAATTAGCCATGAGATTGCTCTCGGTGCTGCAATTTACCCAATCTCTGTCCGTGATGGCCTTCCATACGAAATCATTGTCTACATCTTCAAGGACCCCGTAACAAGCAACTGGTGGGTGCAATACGGGGAGAAAATCAACATCGGATACTGGCCGCCGGAGCTGTTTGTGGCGTTGCGAGTCCACGCAGAAGCGGTGGAGTGGGGAGGTGAAGTGTATAGTGCAAGAGTGGGTACTAATCCACACACAAAAACAGGAATGGGGAGCGGACAGTTTCCTGATTTCTTTGGGGATTCAGGGCTCATAAAACGAATCAGAATTCATGACAATTCAGCTGAACTCAAATTCCCGGAATGGGTTGAAACTTATACGGACGAGTTCAATTGTTATGACGTTGATTATGTTTCTGACTATCTTGAAGATCCTGAGTTCTATTATGGAGGGCCTGGACATAATCCCAAGTGCCCTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Neprosin Neprosin_AP

Protein Analysis

436

Amino Acids

49.3

Weight (kDa)

5.98

Isoelectric Point (pI)

28.66

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Neprosin_AP	PF14365	59 - 172	9e-39	Neprosin activation peptide
Neprosin	PF03080	218 - 428	7.5e-67	Neprosin

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0011824)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G48230 AT5G19170
fragaria_vesca	FvH4_2g32290
prunus_persica	Prupe.1G415600_v2.0.a1 Prupe.1G415700_v2.0.a1 Prupe.1G415700_v2.0.a1 Prupe.1G415800_v2.0.a1
rosa_chinensis	RchiOBHm_Chr6g0310411
rosa_laevigata	RLG00000010484
rosa_multiflora	Rmu_co8348255.1_g000001 Rmu_sc0002896.1_g000001
rosa_roxburghii	Rroxscaffold_7G00158540
rosa_rugosa	Rorug06G0380000
rosa_samantha	Rh6AG494000 Rh6BG503700 Rh6CG508900 Rh6DG494900
rosa_wichuraiana	Rw2G024720 Rw6G042980

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	2 cut(s)	172, 444
AccB1I	GGYRCC	1 cut(s)	274
AccBSI	CCGCTC	1 cut(s)	1104
AccI	GTMKAC	1 cut(s)	918
AccIII	TCCGGA	1 cut(s)	394
AciI	CCGC	4 cut(s)	728, 992, 1031, 1104
AclI	AACGTT	1 cut(s)	639
AclWI	GGATC	3 cut(s)	246, 281, 1253
AcoI	YGGCCR	1 cut(s)	989
AcsI	RAATTY	2 cut(s)	1155, 1181
AfaI	GTAC	4 cut(s)	520, 545, 593, 1072
AfiI	CCNNNNNNNGG	2 cut(s)	468, 1192
AflIII	ACRYGT	1 cut(s)	105
AgsI	TTSAA	7 cut(s)	551, 716, 839, 928, 1199, 1219, 1256
AhlI	ACTAGT	1 cut(s)	521
AjnI	CCWGG	2 cut(s)	826, 1282
AloI	GAACNNNNNNTCC	2 cut(s)	1167, 1199
AluBI	AGCT	5 cut(s)	390, 446, 450, 1000, 1172
AluI	AGCT	5 cut(s)	390, 446, 450, 1000, 1172
Alw26I	GTCTC	1 cut(s)	293
AlwI	GGATC	3 cut(s)	246, 281, 1253
Aor13HI	TCCGGA	1 cut(s)	394
AoxI	GGCC	5 cut(s)	25, 459, 895, 989, 1280
ApeKI	GCWGC	2 cut(s)	226, 866
ApoI	RAATTY	2 cut(s)	1155, 1181
ArsI	GACNNNNNNTTYG	2 cut(s)	900, 932
AspS9I	GGNCC	4 cut(s)	433, 689, 931, 1280
AsuC2I	CCSGG	2 cut(s)	410, 1187
AsuHPI	GGTGA	4 cut(s)	206, 373, 742, 1058
AsuII	TTCGAA	1 cut(s)	324
AsuNHI	GCTAGC	1 cut(s)	446
AvaII	GGWCC	3 cut(s)	433, 689, 931
BaeGI	GKGCMC	1 cut(s)	1304
BanI	GGYRCC	1 cut(s)	274
BanII	GRGCYC	1 cut(s)	1140
BauI	CACGAG	1 cut(s)	495
BbsI	GAAGAC	1 cut(s)	479
BbvI	GCAGC	2 cut(s)	238, 853
BccI	CCATC	6 cut(s)	185, 265, 352, 717, 782, 887
BcgI	CGANNNNNNTGC	2 cut(s)	546, 580
BciT130I	CCWGG	2 cut(s)	828, 1284
BciVI	GTATCC	1 cut(s)	977
BcnI	CCSGG	2 cut(s)	410, 1187
BcoDI	GTCTC	1 cut(s)	293
BcuI	ACTAGT	1 cut(s)	521
BfaI	CTAG	5 cut(s)	279, 332, 447, 516, 522
BfmI	CTRYAG	1 cut(s)	165
BfuAI	ACCTGC	2 cut(s)	172, 444
BfuI	GTATCC	1 cut(s)	977
BisI	GCNGC	3 cut(s)	227, 867, 992
BlsI	GCNGC	3 cut(s)	228, 868, 993
BmcAI	AGTACT	1 cut(s)	520
Bme1390I	CCNGG	4 cut(s)	410, 828, 1187, 1284
Bme18I	GGWCC	3 cut(s)	433, 689, 931
BmgT120I	GGNCC	4 cut(s)	433, 689, 931, 1280
BmiI	GGNNCC	3 cut(s)	276, 607, 933
BmrFI	CCNGG	4 cut(s)	410, 828, 1187, 1284
BmtI	GCTAGC	1 cut(s)	450
BpiI	GAAGAC	1 cut(s)	479
Bpu14I	TTCGAA	1 cut(s)	324
BpuMI	CCSGG	2 cut(s)	410, 1187
Bsa29I	ATCGAT	1 cut(s)	204
BsaJI	CCNNGG	1 cut(s)	371
BsaWI	WCCGGW	1 cut(s)	394
BsaXI	ACNNNNNCTCC	2 cut(s)	1035, 1065
Bsc4I	CCNNNNNNNGG	2 cut(s)	468, 1192
Bse1I	ACTGG	2 cut(s)	953, 992
BseAI	TCCGGA	1 cut(s)	394
BseBI	CCWGG	2 cut(s)	828, 1284
BseCI	ATCGAT	1 cut(s)	204
BseDI	CCNNGG	1 cut(s)	371
BseGI	GGATG	2 cut(s)	241, 728
BseLI	CCNNNNNNNGG	2 cut(s)	468, 1192
BseMII	CTCAG	1 cut(s)	1254
BseNI	ACTGG	2 cut(s)	953, 992
BseSI	GKGCMC	1 cut(s)	1304
BseXI	GCAGC	2 cut(s)	238, 853
BshFI	GGCC	5 cut(s)	27, 461, 897, 991, 1282
BshNI	GGYRCC	1 cut(s)	274
BshVI	ATCGAT	1 cut(s)	204
BsiSI	CCGG	4 cut(s)	395, 410, 995, 1187
BslI	CCNNNNNNNGG	2 cut(s)	468, 1192
BsmAI	GTCTC	1 cut(s)	293
BsmI	GAATGC	1 cut(s)	177
BsnI	GGCC	5 cut(s)	27, 461, 897, 991, 1282
Bsp119I	TTCGAA	1 cut(s)	324
Bsp1286I	GDGCHC	2 cut(s)	1140, 1304
Bsp13I	TCCGGA	1 cut(s)	394
Bsp143I	GATC	4 cut(s)	238, 286, 814, 1258
Bsp19I	CCATGG	1 cut(s)	371
BspACI	CCGC	4 cut(s)	728, 992, 1031, 1104
BspANI	GGCC	5 cut(s)	27, 461, 897, 991, 1282
BspCNI	CTCAG	1 cut(s)	1255
BspDI	ATCGAT	1 cut(s)	204
BspEI	TCCGGA	1 cut(s)	394
BspHI	TCATGA	1 cut(s)	1159
BspLI	GGNNCC	3 cut(s)	276, 607, 933
BspMAI	CTGCAG	1 cut(s)	169
BspMI	ACCTGC	2 cut(s)	172, 444
BspOI	GCTAGC	1 cut(s)	450
BspPI	GGATC	3 cut(s)	246, 281, 1253
BspT104I	TTCGAA	1 cut(s)	324
BspT107I	GGYRCC	1 cut(s)	274
BsrBI	CCGCTC	1 cut(s)	1104
BsrI	ACTGG	2 cut(s)	953, 992
BssECI	CCNNGG	1 cut(s)	371
BssMI	GATC	4 cut(s)	238, 286, 814, 1258
BssSI	CACGAG	1 cut(s)	495
BssT1I	CCWWGG	1 cut(s)	371
Bst2BI	CACGAG	1 cut(s)	495
Bst2UI	CCWGG	2 cut(s)	828, 1284
Bst4CI	ACNGT	5 cut(s)	12, 541, 742, 784, 1110
Bst6I	CTCTTC	3 cut(s)	335, 355, 490
BstBI	TTCGAA	1 cut(s)	324
BstC8I	GCNNGC	2 cut(s)	231, 448
BstDEI	CTNAG	2 cut(s)	155, 1263
BstDSI	CCRYGG	1 cut(s)	371
BstENI	CCTNNNNNAGG	1 cut(s)	466
BstF5I	GGATG	2 cut(s)	241, 728
BstKTI	GATC	4 cut(s)	241, 289, 817, 1261
BstMAI	GTCTC	1 cut(s)	293
BstMBI	GATC	4 cut(s)	238, 286, 814, 1258
BstMWI	GCNNNNNNNGC	2 cut(s)	863, 997
BstNI	CCWGG	2 cut(s)	828, 1284
BstNSI	RCATGY	1 cut(s)	109
BstSCI	CCNGG	4 cut(s)	408, 826, 1185, 1282
BstSFI	CTRYAG	1 cut(s)	165
BstSLI	GKGCMC	1 cut(s)	1304
BstV1I	GCAGC	2 cut(s)	238, 853
BstV2I	GAAGAC	1 cut(s)	479
BstX2I	RGATCY	1 cut(s)	1258
BstYI	RGATCY	1 cut(s)	1258
Bsu15I	ATCGAT	1 cut(s)	204
BsuI	GTATCC	1 cut(s)	977
BsuRI	GGCC	5 cut(s)	27, 461, 897, 991, 1282
BsuTUI	ATCGAT	1 cut(s)	204
BtgI	CCRYGG	1 cut(s)	371
BtsCI	GGATG	2 cut(s)	241, 728
BveI	ACCTGC	2 cut(s)	172, 444
Cac8I	GCNNGC	2 cut(s)	231, 448
CciI	TCATGA	1 cut(s)	1159
Cfr13I	GGNCC	4 cut(s)	433, 689, 931, 1280
ClaI	ATCGAT	1 cut(s)	204
CseI	GACGC	1 cut(s)	484
Csp6I	GTAC	4 cut(s)	519, 544, 592, 1071
CviAII	CATG	7 cut(s)	106, 355, 372, 506, 671, 848, 1160
CviQI	GTAC	4 cut(s)	519, 544, 592, 1071
DdeI	CTNAG	2 cut(s)	155, 1263
DpnI	GATC	4 cut(s)	240, 288, 816, 1260
DpnII	GATC	4 cut(s)	238, 286, 814, 1258
EaeI	YGGCCR	1 cut(s)	989
Eam1104I	CTCTTC	3 cut(s)	335, 355, 490
EarI	CTCTTC	3 cut(s)	335, 355, 490
Eco130I	CCWWGG	1 cut(s)	371
Eco147I	AGGCCT	1 cut(s)	461
Eco24I	GRGCYC	1 cut(s)	1140
Eco32I	GATATC	2 cut(s)	199, 619
Eco47I	GGWCC	3 cut(s)	433, 689, 931
EcoNI	CCTNNNNNAGG	1 cut(s)	466
EcoO109I	RGGNCCY	3 cut(s)	433, 931, 1280
EcoRI	GAATTC	1 cut(s)	1155
EcoRII	CCWGG	2 cut(s)	826, 1282
EcoRV	GATATC	2 cut(s)	199, 619
EcoT14I	CCWWGG	1 cut(s)	371
EcoT38I	GRGCYC	1 cut(s)	1140
ErhI	CCWWGG	1 cut(s)	371
FaeI	CATG	7 cut(s)	109, 358, 375, 509, 674, 851, 1163
FatI	CATG	7 cut(s)	105, 354, 371, 505, 670, 847, 1159
FblI	GTMKAC	1 cut(s)	918
Fnu4HI	GCNGC	3 cut(s)	227, 867, 992
FokI	GGATG	2 cut(s)	228, 735
FriOI	GRGCYC	1 cut(s)	1140
Fsp4HI	GCNGC	3 cut(s)	227, 867, 992
FspBI	CTAG	5 cut(s)	279, 332, 447, 516, 522
GluI	GCNGC	3 cut(s)	227, 867, 992
HaeIII	GGCC	5 cut(s)	27, 461, 897, 991, 1282
HapII	CCGG	4 cut(s)	395, 410, 995, 1187
HgaI	GACGC	1 cut(s)	484
Hin1II	CATG	7 cut(s)	109, 358, 375, 509, 674, 851, 1163
HincII	GTYRAC	1 cut(s)	136
HindII	GTYRAC	1 cut(s)	136
HinfI	GANTC	9 cut(s)	305, 420, 512, 631, 716, 733, 1017, 1130, 1149
HpaII	CCGG	4 cut(s)	395, 410, 995, 1187
HphI	GGTGA	4 cut(s)	206, 373, 742, 1058
Hpy166II	GTNNAC	5 cut(s)	136, 220, 544, 919, 1021
Hpy188I	TCNGA	7 cut(s)	183, 291, 425, 443, 983, 1154, 1246
Hpy188III	TCNNGA	7 cut(s)	268, 395, 720, 1115, 1160, 1253, 1262
Hpy8I	GTNNAC	5 cut(s)	136, 220, 544, 919, 1021
HpyAV	CCTTC	6 cut(s)	392, 462, 557, 562, 581, 908
HpyCH4III	ACNGT	5 cut(s)	12, 541, 742, 784, 1110
HpyCH4IV	ACGT	3 cut(s)	216, 639, 1230
HpyCH4V	TGCA	6 cut(s)	167, 210, 505, 869, 958, 1061
HpyF10VI	GCNNNNNNNGC	2 cut(s)	863, 997
HpyF3I	CTNAG	2 cut(s)	155, 1263
HpySE526I	ACGT	3 cut(s)	216, 639, 1230
Hsp92II	CATG	7 cut(s)	109, 358, 375, 509, 674, 851, 1163
Kpn2I	TCCGGA	1 cut(s)	394
Kzo9I	GATC	4 cut(s)	238, 286, 814, 1258
LmnI	GCTCC	4 cut(s)	444, 605, 997, 1101
Lsp1109I	GCAGC	2 cut(s)	238, 853
MaeI	CTAG	5 cut(s)	279, 332, 447, 516, 522
MaeII	ACGT	3 cut(s)	216, 639, 1230
MaeIII	GTNAC	4 cut(s)	101, 361, 524, 937
MalI	GATC	4 cut(s)	240, 288, 816, 1260
MbiI	CCGCTC	1 cut(s)	1104
MboI	GATC	4 cut(s)	238, 286, 814, 1258
MfeI	CAATTG	1 cut(s)	1219
MflI	RGATCY	1 cut(s)	1258
MhlI	GDGCHC	2 cut(s)	1140, 1304
MluCI	AATT	9 cut(s)	51, 72, 143, 840, 870, 1155, 1165, 1181, 1219
MlyI	GAGTC	3 cut(s)	521, 625, 1026
MmeI	TCCRAC	2 cut(s)	216, 314
MroI	TCCGGA	1 cut(s)	394
MseI	TTAA	3 cut(s)	146, 171, 1306
MslI	CAYNNNNRTG	2 cut(s)	359, 370
MspA1I	CMGCKG	1 cut(s)	1172
MspI	CCGG	4 cut(s)	395, 410, 995, 1187
MspR9I	CCNGG	4 cut(s)	410, 828, 1187, 1284
MunI	CAATTG	1 cut(s)	1219
Mva1269I	GAATGC	1 cut(s)	177
MvaI	CCWGG	2 cut(s)	828, 1284
MwoI	GCNNNNNNNGC	2 cut(s)	863, 997
NciI	CCSGG	2 cut(s)	410, 1187
NcoI	CCATGG	1 cut(s)	371
NdeII	GATC	4 cut(s)	238, 286, 814, 1258
NheI	GCTAGC	1 cut(s)	446
NlaIII	CATG	7 cut(s)	109, 358, 375, 509, 674, 851, 1163
NlaIV	GGNNCC	3 cut(s)	276, 607, 933
NmuCI	GTSAC	2 cut(s)	361, 524
NspI	RCATGY	1 cut(s)	109
NspV	TTCGAA	1 cut(s)	324
PagI	TCATGA	1 cut(s)	1159
PceI	AGGCCT	1 cut(s)	461
PciI	ACATGT	1 cut(s)	105
PctI	GAATGC	1 cut(s)	177
PfeI	GAWTC	6 cut(s)	305, 420, 716, 733, 1130, 1149
PfoI	TCCNGGA	2 cut(s)	826, 1185
PkrI	GCNGC	3 cut(s)	228, 868, 993
PleI	GAGTC	3 cut(s)	520, 625, 1025
PpsI	GAGTC	3 cut(s)	520, 625, 1025
PpuMI	RGGWCCY	2 cut(s)	433, 931
PscI	ACATGT	1 cut(s)	105
Psp1406I	AACGTT	1 cut(s)	639
Psp5II	RGGWCCY	2 cut(s)	433, 931
Psp6I	CCWGG	2 cut(s)	826, 1282
PspGI	CCWGG	2 cut(s)	826, 1282
PspN4I	GGNNCC	3 cut(s)	276, 607, 933
PspPI	GGNCC	4 cut(s)	433, 689, 931, 1280
PspPPI	RGGWCCY	2 cut(s)	433, 931
PstI	CTGCAG	1 cut(s)	169
PsuI	RGATCY	1 cut(s)	1258
PvuII	CAGCTG	1 cut(s)	1172
RsaI	GTAC	4 cut(s)	520, 545, 593, 1072
RsaNI	GTAC	4 cut(s)	519, 544, 592, 1071
RseI	CAYNNNNRTG	2 cut(s)	359, 370
SaqAI	TTAA	3 cut(s)	146, 171, 1306
SatI	GCNGC	3 cut(s)	227, 867, 992
Sau3AI	GATC	4 cut(s)	238, 286, 814, 1258
Sau96I	GGNCC	4 cut(s)	433, 689, 931, 1280
ScaI	AGTACT	1 cut(s)	520
SchI	GAGTC	3 cut(s)	521, 625, 1026
ScrFI	CCNGG	4 cut(s)	410, 828, 1187, 1284
SduI	GDGCHC	2 cut(s)	1140, 1304
SfcI	CTRYAG	1 cut(s)	165
SfuI	TTCGAA	1 cut(s)	324
SinI	GGWCC	3 cut(s)	433, 689, 931
SmiMI	CAYNNNNRTG	2 cut(s)	359, 370
SpeI	ACTAGT	1 cut(s)	521
Sse9I	AATT	9 cut(s)	51, 72, 143, 840, 870, 1155, 1165, 1181, 1219
SseBI	AGGCCT	1 cut(s)	461
SsiI	CCGC	4 cut(s)	728, 992, 1031, 1104
SspMI	CTAG	5 cut(s)	279, 332, 447, 516, 522
StuI	AGGCCT	1 cut(s)	461
StyD4I	CCNGG	4 cut(s)	408, 826, 1185, 1282
StyI	CCWWGG	1 cut(s)	371
TaaI	ACNGT	5 cut(s)	12, 541, 742, 784, 1110
TaiI	ACGT	3 cut(s)	219, 642, 1233
TaqI	TCGA	6 cut(s)	204, 308, 324, 566, 763, 786
TasI	AATT	9 cut(s)	51, 72, 143, 840, 870, 1155, 1165, 1181, 1219
TatI	WGTACW	1 cut(s)	518
TauI	GCSGC	1 cut(s)	994
TfiI	GAWTC	6 cut(s)	305, 420, 716, 733, 1130, 1149
Tru1I	TTAA	3 cut(s)	146, 171, 1306
Tru9I	TTAA	3 cut(s)	146, 171, 1306
TseFI	GTSAC	2 cut(s)	361, 524
TseI	GCWGC	2 cut(s)	226, 866
Tsp45I	GTSAC	2 cut(s)	361, 524
TspDTI	ATGAA	1 cut(s)	1148
TspGWI	ACGGA	3 cut(s)	480, 878, 1223
VpaK11BI	GGWCC	3 cut(s)	433, 689, 931
XagI	CCTNNNNNAGG	1 cut(s)	466
XapI	RAATTY	2 cut(s)	1155, 1181
XceI	RCATGY	1 cut(s)	109
XmiI	GTMKAC	1 cut(s)	918
XspI	CTAG	5 cut(s)	279, 332, 447, 516, 522
ZrmI	AGTACT	1 cut(s)	520

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.