Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr2

Orthogroup ID

OG0011824

Physical Location & Seq

Genomic Coordinates Forward (+)

36542795 .. 36548742

Gene Structure 5948 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw2G024720.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 777 bp

ATGAAACAGAGGTCACAACAACTGGGGAAAAGGTTGAGTTGGGGTGGTATTATCAGACTGAAGGGGTTGCTAATTATTCTGGGAGTGACTCTAATTGGATGTTGTGTGGTATTTAGGGAGGTTGACCGAAAACTAAGCCAACCTAGAAAACCTACAGTTAAAAGCATTCAGGTCAGTATCATTGAAGATGGTGATATCATTGATTGCATTGACATTTCCAAGCAGCTAGCTTTTGATCATCCCTCTCTCATGAACCATATCAATCAGAAAAAGGAGCTGCTCAGAGCTAGCTCAACCAAGTCAATATTGTTTGCTGATGAGTACAAATATATAGAAGGCAAAGGAGATATCAAAGTTTGGGCTCCTATTTATCCTAATGTGGATCCAAGTGTATATGGAGACAGTACTACTCAATTTGATATGATACCTGTTCATCCAAGCAGGCTAATGCTTCACAAGAGAATAAGTTGCTTTGATCTTACTTGTCCCGGGTTTGCTCAAACCAGCCATGAAATTGTTCTTGGTGTTGCAATCTACTCAATCTCCATTCGTTATGGCCTTCCAAACAAAATCATAATTTACATAATCAAGGATATAGATAATTGGTGGGTACAATACAAGGACAAAATCAATATCGGATACTGGCAACCGAAGCTGTTTGGAGCATTCTATCATGCACAGTTTTATGATTCAGATTATCTTGAAGATCCTGAGTTCTATTATGAAGTGCATGCCATAATGAAATGTGCCCTTAATCAAGTCTTAACTAGTAGTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Neprosin Neprosin_AP

Protein Analysis

258

Amino Acids

29.64

Weight (kDa)

8.41

Isoelectric Point (pI)

36.81

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Neprosin_AP	PF14365	62 - 92	2.9e-10	Neprosin activation peptide
Neprosin	PF03080	127 - 222	7.6e-18	Neprosin

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0011824)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G48230 AT5G19170
fragaria_vesca	FvH4_2g32290
prunus_persica	Prupe.1G415600_v2.0.a1 Prupe.1G415700_v2.0.a1 Prupe.1G415700_v2.0.a1 Prupe.1G415800_v2.0.a1
rosa_chinensis	RchiOBHm_Chr6g0310411
rosa_laevigata	RLG00000010484
rosa_multiflora	Rmu_co8348255.1_g000001 Rmu_sc0002896.1_g000001
rosa_roxburghii	Rroxscaffold_7G00158540
rosa_rugosa	Rorug06G0380000
rosa_samantha	Rh6AG494000 Rh6BG503700 Rh6CG508900 Rh6DG494900
rosa_wichuraiana	Rw2G024720 Rw6G042980

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	3 cut(s)	377, 390, 701
AcuI	CTGAAG	1 cut(s)	80
AfaI	GTAC	3 cut(s)	323, 406, 612
AgsI	TTSAA	2 cut(s)	185, 704
AhlI	ACTAGT	1 cut(s)	767
AjuI	GAANNNNNNNTTGG	2 cut(s)	504, 536
AluBI	AGCT	6 cut(s)	226, 230, 277, 287, 291, 655
AluI	AGCT	6 cut(s)	226, 230, 277, 287, 291, 655
Alw26I	GTCTC	1 cut(s)	393
AlwI	GGATC	3 cut(s)	377, 390, 701
Ama87I	CYCGRG	1 cut(s)	488
AoxI	GGCC	1 cut(s)	556
ApeKI	GCWGC	2 cut(s)	223, 277
Asp700I	GAANNNNTTC	1 cut(s)	516
AsuC2I	CCSGG	2 cut(s)	489, 490
AsuHPI	GGTGA	1 cut(s)	203
AsuNHI	GCTAGC	2 cut(s)	226, 287
AvaI	CYCGRG	1 cut(s)	488
BaeGI	GKGCMC	1 cut(s)	751
BamHI	GGATCC	1 cut(s)	382
BanII	GRGCYC	1 cut(s)	364
BbvI	GCAGC	2 cut(s)	235, 264
BccI	CCATC	1 cut(s)	182
BciVI	GTATCC	1 cut(s)	632
BclI	TGATCA	1 cut(s)	235
BcnI	CCSGG	2 cut(s)	489, 490
BcoDI	GTCTC	1 cut(s)	393
BcuI	ACTAGT	1 cut(s)	767
BfaI	CTAG	4 cut(s)	144, 227, 288, 768
BfmI	CTRYAG	1 cut(s)	153
BfuI	GTATCC	1 cut(s)	632
BisI	GCNGC	2 cut(s)	224, 278
BlsI	GCNGC	2 cut(s)	225, 279
BmcAI	AGTACT	1 cut(s)	406
Bme1390I	CCNGG	2 cut(s)	489, 490
BmeT110I	CYCGRG	1 cut(s)	488
BmiI	GGNNCC	2 cut(s)	363, 384
BmrFI	CCNGG	2 cut(s)	489, 490
BmrI	ACTGGG	1 cut(s)	32
BmtI	GCTAGC	2 cut(s)	230, 291
BmuI	ACTGGG	1 cut(s)	32
BpuMI	CCSGG	2 cut(s)	489, 490
BsaJI	CCNNGG	1 cut(s)	488
BsaXI	ACNNNNNCTCC	2 cut(s)	527, 557
Bse1I	ACTGG	2 cut(s)	27, 647
BseDI	CCNNGG	1 cut(s)	488
BseGI	GGATG	3 cut(s)	104, 238, 433
BseMII	CTCAG	2 cut(s)	295, 702
BseNI	ACTGG	2 cut(s)	27, 647
BseSI	GKGCMC	1 cut(s)	751
BseXI	GCAGC	2 cut(s)	235, 264
BshFI	GGCC	1 cut(s)	558
BsiHKCI	CYCGRG	1 cut(s)	488
BsiSI	CCGG	1 cut(s)	489
BslFI	GGGAC	1 cut(s)	471
BsmAI	GTCTC	1 cut(s)	393
BsmFI	GGGAC	1 cut(s)	471
BsmI	GAATGC	2 cut(s)	165, 665
BsnI	GGCC	1 cut(s)	558
BsoBI	CYCGRG	1 cut(s)	488
Bsp1286I	GDGCHC	2 cut(s)	364, 751
Bsp143I	GATC	4 cut(s)	235, 382, 475, 706
BspANI	GGCC	1 cut(s)	558
BspCNI	CTCAG	2 cut(s)	294, 703
BspHI	TCATGA	1 cut(s)	249
BspLI	GGNNCC	2 cut(s)	363, 384
BspOI	GCTAGC	2 cut(s)	230, 291
BspPI	GGATC	3 cut(s)	377, 390, 701
BsrI	ACTGG	2 cut(s)	27, 647
BssECI	CCNNGG	1 cut(s)	488
BssMI	GATC	4 cut(s)	235, 382, 475, 706
Bst4CI	ACNGT	3 cut(s)	157, 404, 681
BstC8I	GCNNGC	4 cut(s)	228, 289, 443, 732
BstDEI	CTNAG	3 cut(s)	134, 281, 711
BstF5I	GGATG	3 cut(s)	104, 238, 433
BstKTI	GATC	4 cut(s)	238, 385, 478, 709
BstMAI	GTCTC	1 cut(s)	393
BstMBI	GATC	4 cut(s)	235, 382, 475, 706
BstMWI	GCNNNNNNNGC	1 cut(s)	652
BstNSI	RCATGY	1 cut(s)	734
BstSCI	CCNGG	2 cut(s)	487, 488
BstSFI	CTRYAG	1 cut(s)	153
BstSLI	GKGCMC	1 cut(s)	751
BstV1I	GCAGC	2 cut(s)	235, 264
BstX2I	RGATCY	2 cut(s)	382, 706
BstYI	RGATCY	2 cut(s)	382, 706
BsuI	GTATCC	1 cut(s)	632
BsuRI	GGCC	1 cut(s)	558
BtsCI	GGATG	3 cut(s)	104, 238, 433
Cac8I	GCNNGC	4 cut(s)	228, 289, 443, 732
CciI	TCATGA	1 cut(s)	249
Cfr9I	CCCGGG	1 cut(s)	488
Csp6I	GTAC	3 cut(s)	322, 405, 611
CviAII	CATG	4 cut(s)	250, 509, 674, 731
CviQI	GTAC	3 cut(s)	322, 405, 611
DdeI	CTNAG	3 cut(s)	134, 281, 711
DpnI	GATC	4 cut(s)	237, 384, 477, 708
DpnII	GATC	4 cut(s)	235, 382, 475, 706
Eco24I	GRGCYC	1 cut(s)	364
Eco32I	GATATC	2 cut(s)	196, 349
Eco57I	CTGAAG	1 cut(s)	80
Eco88I	CYCGRG	1 cut(s)	488
EcoRV	GATATC	2 cut(s)	196, 349
EcoT38I	GRGCYC	1 cut(s)	364
FaeI	CATG	4 cut(s)	253, 512, 677, 734
FaqI	GGGAC	1 cut(s)	471
FatI	CATG	4 cut(s)	249, 508, 673, 730
FbaI	TGATCA	1 cut(s)	235
Fnu4HI	GCNGC	2 cut(s)	224, 278
FokI	GGATG	3 cut(s)	111, 225, 420
FriOI	GRGCYC	1 cut(s)	364
Fsp4HI	GCNGC	2 cut(s)	224, 278
FspBI	CTAG	4 cut(s)	144, 227, 288, 768
GluI	GCNGC	2 cut(s)	224, 278
HaeIII	GGCC	1 cut(s)	558
HapII	CCGG	1 cut(s)	489
Hin1II	CATG	4 cut(s)	253, 512, 677, 734
HincII	GTYRAC	1 cut(s)	124
HindII	GTYRAC	1 cut(s)	124
HinfI	GANTC	2 cut(s)	88, 689
HpaII	CCGG	1 cut(s)	489
HphI	GGTGA	1 cut(s)	203
Hpy166II	GTNNAC	1 cut(s)	124
Hpy188I	TCNGA	5 cut(s)	56, 267, 284, 638, 694
Hpy188III	TCNNGA	3 cut(s)	250, 701, 710
Hpy8I	GTNNAC	1 cut(s)	124
HpyAV	CCTTC	3 cut(s)	55, 329, 569
HpyCH4III	ACNGT	3 cut(s)	157, 404, 681
HpyCH4V	TGCA	4 cut(s)	207, 530, 677, 730
HpyF10VI	GCNNNNNNNGC	1 cut(s)	652
HpyF3I	CTNAG	3 cut(s)	134, 281, 711
Hsp92II	CATG	4 cut(s)	253, 512, 677, 734
Ksp22I	TGATCA	1 cut(s)	235
Kzo9I	GATC	4 cut(s)	235, 382, 475, 706
LmnI	GCTCC	3 cut(s)	274, 367, 662
LpnPI	CCDG	9 cut(s)	8, 65, 155, 427, 441, 502, 517, 628, 723
Lsp1109I	GCAGC	2 cut(s)	235, 264
MaeI	CTAG	4 cut(s)	144, 227, 288, 768
MaeIII	GTNAC	2 cut(s)	12, 85
MalI	GATC	4 cut(s)	237, 384, 477, 708
MboI	GATC	4 cut(s)	235, 382, 475, 706
MboII	GAAGA	2 cut(s)	197, 716
MflI	RGATCY	2 cut(s)	382, 706
MhlI	GDGCHC	2 cut(s)	364, 751
MluCI	AATT	6 cut(s)	72, 93, 413, 513, 576, 601
MlyI	GAGTC	1 cut(s)	82
MnlI	CCTC	3 cut(s)	3, 112, 253
MroXI	GAANNNNTTC	1 cut(s)	516
MseI	TTAA	4 cut(s)	159, 753, 764, 775
MspI	CCGG	1 cut(s)	489
MspR9I	CCNGG	2 cut(s)	489, 490
Mva1269I	GAATGC	2 cut(s)	165, 665
MwoI	GCNNNNNNNGC	1 cut(s)	652
NciI	CCSGG	2 cut(s)	489, 490
NdeII	GATC	4 cut(s)	235, 382, 475, 706
NheI	GCTAGC	2 cut(s)	226, 287
NlaIII	CATG	4 cut(s)	253, 512, 677, 734
NlaIV	GGNNCC	2 cut(s)	363, 384
NmuCI	GTSAC	2 cut(s)	12, 85
NspI	RCATGY	1 cut(s)	734
PaeI	GCATGC	1 cut(s)	734
PagI	TCATGA	1 cut(s)	249
PctI	GAATGC	2 cut(s)	165, 665
PdmI	GAANNNNTTC	1 cut(s)	516
PfeI	GAWTC	1 cut(s)	689
PkrI	GCNGC	2 cut(s)	225, 279
PleI	GAGTC	1 cut(s)	82
PpsI	GAGTC	1 cut(s)	82
PspN4I	GGNNCC	2 cut(s)	363, 384
PsuI	RGATCY	2 cut(s)	382, 706
RsaI	GTAC	3 cut(s)	323, 406, 612
RsaNI	GTAC	3 cut(s)	322, 405, 611
SaqAI	TTAA	4 cut(s)	159, 753, 764, 775
SatI	GCNGC	2 cut(s)	224, 278
Sau3AI	GATC	4 cut(s)	235, 382, 475, 706
ScaI	AGTACT	1 cut(s)	406
SchI	GAGTC	1 cut(s)	82
ScrFI	CCNGG	2 cut(s)	489, 490
SduI	GDGCHC	2 cut(s)	364, 751
SfcI	CTRYAG	1 cut(s)	153
SmaI	CCCGGG	1 cut(s)	490
SpeI	ACTAGT	1 cut(s)	767
SphI	GCATGC	1 cut(s)	734
Sse9I	AATT	6 cut(s)	72, 93, 413, 513, 576, 601
SspI	AATATT	1 cut(s)	306
SspMI	CTAG	4 cut(s)	144, 227, 288, 768
StyD4I	CCNGG	2 cut(s)	487, 488
TaaI	ACNGT	3 cut(s)	157, 404, 681
TaqII	GACCGA	1 cut(s)	141
TasI	AATT	6 cut(s)	72, 93, 413, 513, 576, 601
TatI	WGTACW	2 cut(s)	321, 404
TfiI	GAWTC	1 cut(s)	689
Tru1I	TTAA	4 cut(s)	159, 753, 764, 775
Tru9I	TTAA	4 cut(s)	159, 753, 764, 775
TseFI	GTSAC	2 cut(s)	12, 85
TseI	GCWGC	2 cut(s)	223, 277
Tsp45I	GTSAC	2 cut(s)	12, 85
TspDTI	ATGAA	6 cut(s)	17, 266, 422, 525, 738, 755
TspMI	CCCGGG	1 cut(s)	488
XceI	RCATGY	1 cut(s)	734
XmaI	CCCGGG	1 cut(s)	488
XmnI	GAANNNNTTC	1 cut(s)	516
XspI	CTAG	4 cut(s)	144, 227, 288, 768
ZrmI	AGTACT	1 cut(s)	406

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.