Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp01

Orthogroup ID

OG0011824

Physical Location & Seq

Genomic Coordinates Forward (+)

36116363 .. 36118677

Gene Structure 2315 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.1G415600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1314 bp

ATGGGGGGAAGGGGGTTGTTTGGTGGTGAAGGGATTGGAATAAGGGGCATAATGGTAATTATGTTGGGAGCAACTGTGACTCTTATTAGATGTGGGGTGCTTGTGGAGGGTAAGTTGTTCTCTAAACAGAAGATTTTGGAAGCCGAAAGACAATTAAACCAACTTAGAAGGCCTGCAGTTAAAACCATTCAGAGTGAAGATGGTGATATCATTGATTGCATTGACATCTACAAGCAGCCAGCTTTTGATCATCCTGCTCTCAGAAACCACACCATCCAGATGGCACCAACATATGATACAACCAAGGAGACAAAGACAATGAAAAAAATGGACAGATGGAAGAAGAGGAATGAAGAACAATCTCCCATTACCGTGAAGCAAACATGGCACAAAAGTGGAAGCTGTCCTCAGGGAACAATCCCGGTCCGAAGAATCCAGAAAAAGGAGCTTCTGAGAGCTAGCTTGGTTAAGGACTATGGAAGAAAGAAGCACAGTTCTACCTTGTCTCGTCATGTTTCACAGTTAAGTGACAACAAAACTGTGTACCTTCAACGAGCAAACCACTCGAAGGCAATATTGTTTACAGAAGGGTACAGATATAATGGAGCCAAAGGAGACATCAAAGTTTATAACCCATCTGTCGAGCTTGATGATGAATATAGTACTTCTCAAGTTTGTCTCATAAATGGTGCTTATTATGACTTTGAGAGTGTTGAATCTGGATGGGCGGTAAATCCCAGTGTATACGGGGACAGACAGACTCGATTTTTCGTGTATTGGACTGTTGATGGCTCACAGAAAACTGGTTGCTTTGATCTCACTTGTCCTGGATTTGTTCAGACTAGCCATGAAATTGCTCTTGGTGCAGCAATCCATCCAATCTCTGTTCCTCATGGGCTTCCATATCAAATAATAGTCTACATCTACAAGGATCCAGTAACAAGCAACTGGTGGGTGCAATATGGGGAGAGAATTAACATCGGTTACTGGCCGCCGGAGCTGTTTGTTTTATTGAGCTACCATGCAACAAGTGTTGAATGGGGAGGTGAAGTTTATAGCTCAAGAGTGGGAACTACGCCTCACACAAGAACAGATATGGGCAGTGGACACTTTGCTGAGTCATCAGTTTGGGGGACTTCAGGCGTCATAAAAAGAATTCGAGTACATGAGAATTCACCTGGGCTGAAATTCCCTGATATAGTTAATACTTTGATGGATGAGTTCAACTGTTATGATGTCAAGTATCTTTCGGATTATGTTGAAGATCCTGAGTTCTATTATGGAGGGCCTGGTAGAAATTATATGTGCCCTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Neprosin Neprosin_AP

Protein Analysis

438

Amino Acids

49.49

Weight (kDa)

8.43

Isoelectric Point (pI)

39.12

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0011824)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G48230 AT5G19170
fragaria_vesca	FvH4_2g32290
prunus_persica	Prupe.1G415600_v2.0.a1 Prupe.1G415700_v2.0.a1 Prupe.1G415700_v2.0.a1 Prupe.1G415800_v2.0.a1
rosa_chinensis	RchiOBHm_Chr6g0310411
rosa_laevigata	RLG00000010484
rosa_multiflora	Rmu_co8348255.1_g000001 Rmu_sc0002896.1_g000001
rosa_roxburghii	Rroxscaffold_7G00158540
rosa_rugosa	Rorug06G0380000
rosa_samantha	Rh6AG494000 Rh6BG503700 Rh6CG508900 Rh6DG494900
rosa_wichuraiana	Rw2G024720 Rw6G042980

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	630
AccB1I	GGYRCC	1 cut(s)	283
AccI	GTMKAC	2 cut(s)	744, 918
AciI	CCGC	2 cut(s)	728, 992
AclWI	GGATC	3 cut(s)	926, 939, 1259
AcoI	YGGCCR	1 cut(s)	989
AcsI	RAATTY	3 cut(s)	1155, 1171, 1187
AcuI	CTGAAG	1 cut(s)	1122
AcyI	GRCGYC	1 cut(s)	1143
AfaI	GTAC	4 cut(s)	545, 593, 664, 1164
AfiI	CCNNNNNNNGG	2 cut(s)	442, 568
AgsI	TTSAA	5 cut(s)	551, 716, 1037, 1225, 1262
AjnI	CCWGG	3 cut(s)	826, 1177, 1288
AjuI	GAANNNNNNNTTGG	2 cut(s)	843, 875
AleI	CACNNNNGTG	1 cut(s)	393
AluBI	AGCT	9 cut(s)	242, 402, 448, 458, 462, 646, 1000, 1017, 1059
AluI	AGCT	9 cut(s)	242, 402, 448, 458, 462, 646, 1000, 1017, 1059
Alw26I	GTCTC	4 cut(s)	302, 510, 609, 683
AlwI	GGATC	3 cut(s)	926, 939, 1259
AoxI	GGCC	3 cut(s)	170, 989, 1286
ApeKI	GCWGC	2 cut(s)	235, 866
ApoI	RAATTY	3 cut(s)	1155, 1171, 1187
AspS9I	GGNCC	2 cut(s)	424, 1286
AsuC2I	CCSGG	1 cut(s)	422
AsuHPI	GGTGA	4 cut(s)	38, 215, 1058, 1167
AsuNHI	GCTAGC	1 cut(s)	458
AvaII	GGWCC	1 cut(s)	424
AxyI	CCTNAGG	1 cut(s)	408
BaeGI	GKGCMC	1 cut(s)	1310
BamHI	GGATCC	1 cut(s)	931
BanI	GGYRCC	1 cut(s)	283
BbvI	GCAGC	2 cut(s)	247, 878
BccI	CCATC	9 cut(s)	194, 274, 281, 330, 643, 717, 782, 882, 1207
BcgI	CGANNNNNNTGC	2 cut(s)	546, 580
BciT130I	CCWGG	3 cut(s)	828, 1179, 1290
BclI	TGATCA	1 cut(s)	247
BcnI	CCSGG	1 cut(s)	422
BcoDI	GTCTC	4 cut(s)	302, 510, 609, 683
BfaI	CTAG	2 cut(s)	459, 843
BfmI	CTRYAG	1 cut(s)	174
BisI	GCNGC	3 cut(s)	236, 867, 992
BlsI	GCNGC	3 cut(s)	237, 868, 993
BmcAI	AGTACT	1 cut(s)	664
Bme1390I	CCNGG	4 cut(s)	422, 828, 1179, 1290
Bme18I	GGWCC	1 cut(s)	424
BmgT120I	GGNCC	2 cut(s)	424, 1286
BmiI	GGNNCC	3 cut(s)	285, 607, 933
BmrFI	CCNGG	4 cut(s)	422, 828, 1179, 1290
BmrI	ACTGGG	1 cut(s)	732
BmtI	GCTAGC	1 cut(s)	462
BmuI	ACTGGG	1 cut(s)	732
BpuEI	CTTGAG	2 cut(s)	654, 1045
BpuMI	CCSGG	1 cut(s)	422
BsaHI	GRCGYC	1 cut(s)	1143
BsaJI	CCNNGG	2 cut(s)	303, 1178
BsaXI	ACNNNNNCTCC	6 cut(s)	60, 90, 98, 128, 1035, 1065
Bsc4I	CCNNNNNNNGG	2 cut(s)	442, 568
Bse1I	ACTGG	5 cut(s)	738, 808, 935, 953, 992
Bse21I	CCTNAGG	1 cut(s)	408
BseBI	CCWGG	3 cut(s)	828, 1179, 1290
BseDI	CCNNGG	2 cut(s)	303, 1178
BseGI	GGATG	5 cut(s)	250, 273, 728, 874, 1222
BseLI	CCNNNNNNNGG	2 cut(s)	442, 568
BseMII	CTCAG	5 cut(s)	274, 422, 443, 1107, 1260
BseNI	ACTGG	5 cut(s)	738, 808, 935, 953, 992
BseSI	GKGCMC	1 cut(s)	1310
BseXI	GCAGC	2 cut(s)	247, 878
BsgI	GTGCAG	1 cut(s)	885
BshFI	GGCC	3 cut(s)	172, 991, 1288
BshNI	GGYRCC	1 cut(s)	283
BsiSI	CCGG	2 cut(s)	422, 995
BslFI	GGGAC	2 cut(s)	764, 1147
BslI	CCNNNNNNNGG	2 cut(s)	442, 568
BsmAI	GTCTC	4 cut(s)	302, 510, 609, 683
BsmFI	GGGAC	2 cut(s)	764, 1147
BsnI	GGCC	3 cut(s)	172, 991, 1288
Bsp1286I	GDGCHC	1 cut(s)	1310
Bsp143I	GATC	4 cut(s)	247, 814, 931, 1264
BspACI	CCGC	2 cut(s)	728, 992
BspANI	GGCC	3 cut(s)	172, 991, 1288
BspCNI	CTCAG	5 cut(s)	273, 421, 444, 1108, 1261
BspLI	GGNNCC	3 cut(s)	285, 607, 933
BspMAI	CTGCAG	1 cut(s)	178
BspOI	GCTAGC	1 cut(s)	462
BspPI	GGATC	3 cut(s)	926, 939, 1259
BspT107I	GGYRCC	1 cut(s)	283
BsrI	ACTGG	5 cut(s)	738, 808, 935, 953, 992
BssECI	CCNNGG	2 cut(s)	303, 1178
BssMI	GATC	4 cut(s)	247, 814, 931, 1264
BssNAI	GTATAC	1 cut(s)	745
BssNI	GRCGYC	1 cut(s)	1143
BssT1I	CCWWGG	1 cut(s)	303
Bst1107I	GTATAC	1 cut(s)	745
Bst2UI	CCWGG	3 cut(s)	828, 1179, 1290
Bst4CI	ACNGT	7 cut(s)	76, 373, 494, 522, 541, 784, 1229
Bst6I	CTCTTC	1 cut(s)	338
BstACI	GRCGYC	1 cut(s)	1143
BstC8I	GCNNGC	3 cut(s)	174, 240, 460
BstDEI	CTNAG	6 cut(s)	164, 260, 408, 452, 1116, 1269
BstF5I	GGATG	5 cut(s)	250, 273, 728, 874, 1222
BstKTI	GATC	4 cut(s)	250, 817, 934, 1267
BstMAI	GTCTC	4 cut(s)	302, 510, 609, 683
BstMBI	GATC	4 cut(s)	247, 814, 931, 1264
BstMWI	GCNNNNNNNGC	3 cut(s)	385, 863, 997
BstNI	CCWGG	3 cut(s)	828, 1179, 1290
BstSCI	CCNGG	4 cut(s)	420, 826, 1177, 1288
BstSFI	CTRYAG	1 cut(s)	174
BstSLI	GKGCMC	1 cut(s)	1310
BstV1I	GCAGC	2 cut(s)	247, 878
BstX2I	RGATCY	2 cut(s)	931, 1264
BstXI	CCANNNNNNTGG	1 cut(s)	280
BstYI	RGATCY	2 cut(s)	931, 1264
BstZ17I	GTATAC	1 cut(s)	745
Bsu36I	CCTNAGG	1 cut(s)	408
BsuRI	GGCC	3 cut(s)	172, 991, 1288
BtsCI	GGATG	5 cut(s)	250, 273, 728, 874, 1222
BtsI	GCAGTG	1 cut(s)	1108
BtsIMutI	CAGTG	2 cut(s)	745, 1108
Cac8I	GCNNGC	3 cut(s)	174, 240, 460
Cfr13I	GGNCC	2 cut(s)	424, 1286
CpoI	CGGWCCG	1 cut(s)	424
CseI	GACGC	1 cut(s)	1132
Csp6I	GTAC	4 cut(s)	544, 592, 663, 1163
CspI	CGGWCCG	1 cut(s)	424
CviAII	CATG	6 cut(s)	384, 512, 848, 893, 1022, 1166
CviQI	GTAC	4 cut(s)	544, 592, 663, 1163
DdeI	CTNAG	6 cut(s)	164, 260, 408, 452, 1116, 1269
DpnI	GATC	4 cut(s)	249, 816, 933, 1266
DpnII	GATC	4 cut(s)	247, 814, 931, 1264
EaeI	YGGCCR	1 cut(s)	989
Eam1104I	CTCTTC	1 cut(s)	338
EarI	CTCTTC	1 cut(s)	338
Eco130I	CCWWGG	1 cut(s)	303
Eco147I	AGGCCT	1 cut(s)	172
Eco32I	GATATC	1 cut(s)	208
Eco47I	GGWCC	1 cut(s)	424
Eco57I	CTGAAG	1 cut(s)	1122
Eco81I	CCTNAGG	1 cut(s)	408
EcoO109I	RGGNCCY	1 cut(s)	1286
EcoRI	GAATTC	2 cut(s)	1155, 1171
EcoRII	CCWGG	3 cut(s)	826, 1177, 1288
EcoRV	GATATC	1 cut(s)	208
EcoT14I	CCWWGG	1 cut(s)	303
ErhI	CCWWGG	1 cut(s)	303
FaeI	CATG	6 cut(s)	387, 515, 851, 896, 1025, 1169
FaqI	GGGAC	2 cut(s)	764, 1147
FatI	CATG	6 cut(s)	383, 511, 847, 892, 1021, 1165
FauNDI	CATATG	1 cut(s)	292
FbaI	TGATCA	1 cut(s)	247
FblI	GTMKAC	2 cut(s)	744, 918
Fnu4HI	GCNGC	3 cut(s)	236, 867, 992
FokI	GGATG	5 cut(s)	237, 260, 735, 861, 1229
Fsp4HI	GCNGC	3 cut(s)	236, 867, 992
FspBI	CTAG	2 cut(s)	459, 843
GluI	GCNGC	3 cut(s)	236, 867, 992
HaeIII	GGCC	3 cut(s)	172, 991, 1288
HapII	CCGG	2 cut(s)	422, 995
HgaI	GACGC	1 cut(s)	1132
Hin1I	GRCGYC	1 cut(s)	1143
Hin1II	CATG	6 cut(s)	387, 515, 851, 896, 1025, 1169
HinfI	GANTC	5 cut(s)	79, 432, 716, 760, 1118
HpaII	CCGG	2 cut(s)	422, 995
HphI	GGTGA	4 cut(s)	38, 215, 1058, 1167
Hpy166II	GTNNAC	5 cut(s)	544, 582, 745, 919, 1106
Hpy188I	TCNGA	6 cut(s)	192, 263, 428, 453, 840, 1252
Hpy188III	TCNNGA	5 cut(s)	277, 436, 720, 1062, 1268
Hpy8I	GTNNAC	5 cut(s)	544, 582, 745, 919, 1106
HpyAV	CCTTC	6 cut(s)	3, 23, 162, 557, 562, 581
HpyCH4III	ACNGT	7 cut(s)	76, 373, 494, 522, 541, 784, 1229
HpyCH4V	TGCA	5 cut(s)	176, 219, 866, 958, 1025
HpyF10VI	GCNNNNNNNGC	3 cut(s)	385, 863, 997
HpyF3I	CTNAG	6 cut(s)	164, 260, 408, 452, 1116, 1269
Hsp92I	GRCGYC	1 cut(s)	1143
Hsp92II	CATG	6 cut(s)	387, 515, 851, 896, 1025, 1169
Ksp22I	TGATCA	1 cut(s)	247
Kzo9I	GATC	4 cut(s)	247, 814, 931, 1264
LmnI	GCTCC	4 cut(s)	68, 445, 605, 997
Lsp1109I	GCAGC	2 cut(s)	247, 878
MaeI	CTAG	2 cut(s)	459, 843
MaeIII	GTNAC	4 cut(s)	76, 527, 937, 983
MalI	GATC	4 cut(s)	249, 816, 933, 1266
MboI	GATC	4 cut(s)	247, 814, 931, 1264
MboII	GAAGA	8 cut(s)	142, 209, 352, 355, 365, 441, 492, 1274
MflI	RGATCY	2 cut(s)	931, 1264
MhlI	GDGCHC	1 cut(s)	1310
MluCI	AATT	8 cut(s)	57, 152, 852, 972, 1155, 1171, 1187, 1297
MlyI	GAGTC	3 cut(s)	73, 754, 1127
MnlI	CCTC	7 cut(s)	100, 339, 417, 900, 1037, 1089, 1277
MseI	TTAA	7 cut(s)	155, 180, 468, 524, 975, 1203, 1312
MslI	CAYNNNNRTG	3 cut(s)	278, 371, 393
MspI	CCGG	2 cut(s)	422, 995
MspR9I	CCNGG	4 cut(s)	422, 828, 1179, 1290
MvaI	CCWGG	3 cut(s)	828, 1179, 1290
MwoI	GCNNNNNNNGC	3 cut(s)	385, 863, 997
NciI	CCSGG	1 cut(s)	422
NdeI	CATATG	1 cut(s)	292
NdeII	GATC	4 cut(s)	247, 814, 931, 1264
NheI	GCTAGC	1 cut(s)	458
NlaIII	CATG	6 cut(s)	387, 515, 851, 896, 1025, 1169
NlaIV	GGNNCC	3 cut(s)	285, 607, 933
NmuCI	GTSAC	2 cut(s)	76, 527
OliI	CACNNNNGTG	1 cut(s)	393
PceI	AGGCCT	1 cut(s)	172
PfeI	GAWTC	2 cut(s)	432, 716
PfoI	TCCNGGA	1 cut(s)	826
PkrI	GCNGC	3 cut(s)	237, 868, 993
PleI	GAGTC	3 cut(s)	73, 754, 1126
PpsI	GAGTC	3 cut(s)	73, 754, 1126
PsiI	TTATAA	1 cut(s)	630
Psp6I	CCWGG	3 cut(s)	826, 1177, 1288
PspGI	CCWGG	3 cut(s)	826, 1177, 1288
PspN4I	GGNNCC	3 cut(s)	285, 607, 933
PspPI	GGNCC	2 cut(s)	424, 1286
PstI	CTGCAG	1 cut(s)	178
PsuI	RGATCY	2 cut(s)	931, 1264
RsaI	GTAC	4 cut(s)	545, 593, 664, 1164
RsaNI	GTAC	4 cut(s)	544, 592, 663, 1163
RseI	CAYNNNNRTG	3 cut(s)	278, 371, 393
Rsr2I	CGGWCCG	1 cut(s)	424
RsrII	CGGWCCG	1 cut(s)	424
SaqAI	TTAA	7 cut(s)	155, 180, 468, 524, 975, 1203, 1312
SatI	GCNGC	3 cut(s)	236, 867, 992
Sau3AI	GATC	4 cut(s)	247, 814, 931, 1264
Sau96I	GGNCC	2 cut(s)	424, 1286
ScaI	AGTACT	1 cut(s)	664
SchI	GAGTC	3 cut(s)	73, 754, 1127
ScrFI	CCNGG	4 cut(s)	422, 828, 1179, 1290
SduI	GDGCHC	1 cut(s)	1310
SfcI	CTRYAG	1 cut(s)	174
SinI	GGWCC	1 cut(s)	424
SmiMI	CAYNNNNRTG	3 cut(s)	278, 371, 393
SmlI	CTYRAG	2 cut(s)	669, 1060
SmoI	CTYRAG	2 cut(s)	669, 1060
Sse9I	AATT	8 cut(s)	57, 152, 852, 972, 1155, 1171, 1187, 1297
SseBI	AGGCCT	1 cut(s)	172
SsiI	CCGC	2 cut(s)	728, 992
SspI	AATATT	1 cut(s)	576
SspMI	CTAG	2 cut(s)	459, 843
StuI	AGGCCT	1 cut(s)	172
StyD4I	CCNGG	4 cut(s)	420, 826, 1177, 1288
StyI	CCWWGG	1 cut(s)	303
TaaI	ACNGT	7 cut(s)	76, 373, 494, 522, 541, 784, 1229
TaqI	TCGA	4 cut(s)	566, 642, 763, 1159
TasI	AATT	8 cut(s)	57, 152, 852, 972, 1155, 1171, 1187, 1297
TatI	WGTACW	2 cut(s)	662, 1162
TauI	GCSGC	1 cut(s)	994
TfiI	GAWTC	2 cut(s)	432, 716
Tru1I	TTAA	7 cut(s)	155, 180, 468, 524, 975, 1203, 1312
Tru9I	TTAA	7 cut(s)	155, 180, 468, 524, 975, 1203, 1312
TscAI	CASTG	2 cut(s)	745, 1108
TseFI	GTSAC	2 cut(s)	76, 527
TseI	GCWGC	2 cut(s)	235, 866
Tsp45I	GTSAC	2 cut(s)	76, 527
TspDTI	ATGAA	4 cut(s)	335, 366, 669, 864
TspRI	CASTG	2 cut(s)	745, 1108
VpaK11BI	GGWCC	1 cut(s)	424
XapI	RAATTY	3 cut(s)	1155, 1171, 1187
XmiI	GTMKAC	2 cut(s)	744, 918
XspI	CTAG	2 cut(s)	459, 843
ZrmI	AGTACT	1 cut(s)	664

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.