Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8348255.1

Orthogroup ID

OG0011824

Physical Location & Seq

Genomic Coordinates Reverse (-)

171 .. 954

Gene Structure 784 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8348255.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 543 bp

atggtgtattggacggtcgatggttcaaagaaaacaggttgctttgatctcacttgtcctggatttgttcaaactagccatgagattgctcttggtgctgcaatttacccaatctctgttccttatggccttccatacgaaatcatcgtctatgtcttcaaggaccccataacaagcaattggtgggtgcaatacggggagaaaatcaacatcggatactggccaccggagctgtttatggcgttgcgtgtccacgcagaagcggttgagtggggaggtgaagtgtatagtgcaagagtgggtactaatccgcacacaaaaacaggaatgggtaatggaaactttcctgatggcatttttggggattcaggggtcattaaaagaatcagaattcatgacaattcagctgaactcaaattcccggaatgggttgagacttatgcggacgagttcaactgttatgatgttgattatgtttccgattaccttgaagatcctgagttctattatggagggcctggccataatcccaagtgcccttaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Neprosin Neprosin_AP

Protein Analysis

180

Amino Acids

20.33

Weight (kDa)

4.66

Isoelectric Point (pI)

17.46

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0011824)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G48230 AT5G19170
fragaria_vesca	FvH4_2g32290
prunus_persica	Prupe.1G415600_v2.0.a1 Prupe.1G415700_v2.0.a1 Prupe.1G415700_v2.0.a1 Prupe.1G415800_v2.0.a1
rosa_chinensis	RchiOBHm_Chr6g0310411
rosa_laevigata	RLG00000010484
rosa_multiflora	Rmu_co8348255.1_g000001 Rmu_sc0002896.1_g000001
rosa_roxburghii	Rroxscaffold_7G00158540
rosa_rugosa	Rorug06G0380000
rosa_samantha	Rh6AG494000 Rh6BG503700 Rh6CG508900 Rh6DG494900
rosa_wichuraiana	Rw2G024720 Rw6G042980

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	3 cut(s)	263, 311, 443
AclWI	GGATC	1 cut(s)	488
AcoI	YGGCCR	2 cut(s)	221, 520
AcsI	RAATTY	2 cut(s)	390, 416
AfaI	GTAC	1 cut(s)	304
AfiI	CCNNNNNNNGG	1 cut(s)	427
AgsI	TTSAA	5 cut(s)	27, 71, 160, 454, 491
AjnI	CCWGG	2 cut(s)	58, 517
AloI	GAACNNNNNNTCC	2 cut(s)	402, 434
AluBI	AGCT	2 cut(s)	232, 407
AluI	AGCT	2 cut(s)	232, 407
Alw26I	GTCTC	1 cut(s)	428
AlwI	GGATC	1 cut(s)	488
AoxI	GGCC	4 cut(s)	127, 221, 515, 520
ApeKI	GCWGC	1 cut(s)	98
ApoI	RAATTY	2 cut(s)	390, 416
ArsI	GACNNNNNNTTYG	2 cut(s)	132, 164
AspS9I	GGNCC	2 cut(s)	163, 515
AsuC2I	CCSGG	1 cut(s)	422
AsuHPI	GGTGA	1 cut(s)	290
AvaII	GGWCC	1 cut(s)	163
BaeGI	GKGCMC	1 cut(s)	539
BalI	TGGCCA	2 cut(s)	223, 522
BbsI	GAAGAC	1 cut(s)	148
BbvI	GCAGC	1 cut(s)	85
BccI	CCATC	2 cut(s)	14, 344
BciT130I	CCWGG	2 cut(s)	60, 519
BciVI	GTATCC	1 cut(s)	209
BcnI	CCSGG	1 cut(s)	422
BcoDI	GTCTC	1 cut(s)	428
BfaI	CTAG	1 cut(s)	75
BfuI	GTATCC	1 cut(s)	209
BisI	GCNGC	1 cut(s)	99
BlsI	GCNGC	1 cut(s)	100
Bme1390I	CCNGG	3 cut(s)	60, 422, 519
Bme18I	GGWCC	1 cut(s)	163
BmgT120I	GGNCC	2 cut(s)	163, 515
BmiI	GGNNCC	1 cut(s)	165
BmrFI	CCNGG	3 cut(s)	60, 422, 519
BpiI	GAAGAC	1 cut(s)	148
BpuMI	CCSGG	1 cut(s)	422
BsaWI	WCCGGW	1 cut(s)	226
BsaXI	ACNNNNNCTCC	2 cut(s)	267, 297
Bsc4I	CCNNNNNNNGG	1 cut(s)	427
Bse1I	ACTGG	1 cut(s)	224
BseBI	CCWGG	2 cut(s)	60, 519
BseLI	CCNNNNNNNGG	1 cut(s)	427
BseMII	CTCAG	1 cut(s)	489
BseNI	ACTGG	1 cut(s)	224
BseSI	GKGCMC	1 cut(s)	539
BseXI	GCAGC	1 cut(s)	85
Bsh1285I	CGRYCG	1 cut(s)	18
BshFI	GGCC	4 cut(s)	129, 223, 517, 522
BsiEI	CGRYCG	1 cut(s)	18
BsiSI	CCGG	2 cut(s)	227, 422
BslI	CCNNNNNNNGG	1 cut(s)	427
BsmAI	GTCTC	1 cut(s)	428
BsnI	GGCC	4 cut(s)	129, 223, 517, 522
Bsp1286I	GDGCHC	1 cut(s)	539
Bsp143I	GATC	2 cut(s)	46, 493
BspACI	CCGC	3 cut(s)	263, 311, 443
BspANI	GGCC	4 cut(s)	129, 223, 517, 522
BspCNI	CTCAG	1 cut(s)	490
BspHI	TCATGA	1 cut(s)	394
BspLI	GGNNCC	1 cut(s)	165
BspPI	GGATC	1 cut(s)	488
BsrI	ACTGG	1 cut(s)	224
BssMI	GATC	2 cut(s)	46, 493
Bst2UI	CCWGG	2 cut(s)	60, 519
Bst4CI	ACNGT	2 cut(s)	16, 458
BstDEI	CTNAG	1 cut(s)	498
BstKTI	GATC	2 cut(s)	49, 496
BstMAI	GTCTC	1 cut(s)	428
BstMBI	GATC	2 cut(s)	46, 493
BstMCI	CGRYCG	1 cut(s)	18
BstMWI	GCNNNNNNNGC	2 cut(s)	95, 229
BstNI	CCWGG	2 cut(s)	60, 519
BstSCI	CCNGG	3 cut(s)	58, 420, 517
BstSLI	GKGCMC	1 cut(s)	539
BstV1I	GCAGC	1 cut(s)	85
BstV2I	GAAGAC	1 cut(s)	148
BstX2I	RGATCY	1 cut(s)	493
BstYI	RGATCY	1 cut(s)	493
BsuI	GTATCC	1 cut(s)	209
BsuRI	GGCC	4 cut(s)	129, 223, 517, 522
CciI	TCATGA	1 cut(s)	394
Cfr13I	GGNCC	2 cut(s)	163, 515
Csp6I	GTAC	1 cut(s)	303
CviAII	CATG	2 cut(s)	80, 395
CviJI	RGCY	7 cut(s)	78, 129, 223, 232, 407, 517, 522
CviKI_1	RGCY	7 cut(s)	78, 129, 223, 232, 407, 517, 522
CviQI	GTAC	1 cut(s)	303
DdeI	CTNAG	1 cut(s)	498
DpnI	GATC	2 cut(s)	48, 495
DpnII	GATC	2 cut(s)	46, 493
EaeI	YGGCCR	2 cut(s)	221, 520
Eco47I	GGWCC	1 cut(s)	163
EcoO109I	RGGNCCY	2 cut(s)	163, 515
EcoRI	GAATTC	1 cut(s)	390
EcoRII	CCWGG	2 cut(s)	58, 517
FaeI	CATG	2 cut(s)	83, 398
FatI	CATG	2 cut(s)	79, 394
Fnu4HI	GCNGC	1 cut(s)	99
Fsp4HI	GCNGC	1 cut(s)	99
FspBI	CTAG	1 cut(s)	75
GluI	GCNGC	1 cut(s)	99
HaeIII	GGCC	4 cut(s)	129, 223, 517, 522
HapII	CCGG	2 cut(s)	227, 422
Hin1II	CATG	2 cut(s)	83, 398
HinfI	GANTC	2 cut(s)	365, 384
HpaII	CCGG	2 cut(s)	227, 422
HphI	GGTGA	1 cut(s)	290
Hpy166II	GTNNAC	1 cut(s)	253
Hpy188I	TCNGA	3 cut(s)	215, 389, 481
Hpy188III	TCNNGA	3 cut(s)	347, 395, 497
Hpy8I	GTNNAC	1 cut(s)	253
HpyAV	CCTTC	1 cut(s)	140
HpyCH4III	ACNGT	2 cut(s)	16, 458
HpyCH4V	TGCA	3 cut(s)	101, 190, 293
HpyF10VI	GCNNNNNNNGC	2 cut(s)	95, 229
HpyF3I	CTNAG	1 cut(s)	498
Hsp92II	CATG	2 cut(s)	83, 398
Kzo9I	GATC	2 cut(s)	46, 493
LmnI	GCTCC	1 cut(s)	229
Lsp1109I	GCAGC	1 cut(s)	85
MaeI	CTAG	1 cut(s)	75
MalI	GATC	2 cut(s)	48, 495
MboI	GATC	2 cut(s)	46, 493
MboII	GAAGA	2 cut(s)	148, 503
MfeI	CAATTG	1 cut(s)	178
MflI	RGATCY	1 cut(s)	493
MhlI	GDGCHC	1 cut(s)	539
MlsI	TGGCCA	2 cut(s)	223, 522
MluCI	AATT	5 cut(s)	102, 178, 390, 400, 416
MluNI	TGGCCA	2 cut(s)	223, 522
MnlI	CCTC	2 cut(s)	269, 506
Mox20I	TGGCCA	2 cut(s)	223, 522
MscI	TGGCCA	2 cut(s)	223, 522
MseI	TTAA	2 cut(s)	378, 541
Msp20I	TGGCCA	2 cut(s)	223, 522
MspA1I	CMGCKG	1 cut(s)	407
MspI	CCGG	2 cut(s)	227, 422
MspR9I	CCNGG	3 cut(s)	60, 422, 519
MunI	CAATTG	1 cut(s)	178
MvaI	CCWGG	2 cut(s)	60, 519
MwoI	GCNNNNNNNGC	2 cut(s)	95, 229
NciI	CCSGG	1 cut(s)	422
NdeII	GATC	2 cut(s)	46, 493
NlaIII	CATG	2 cut(s)	83, 398
NlaIV	GGNNCC	1 cut(s)	165
PagI	TCATGA	1 cut(s)	394
PcsI	WCGNNNNNNNCGW	1 cut(s)	144
PfeI	GAWTC	2 cut(s)	365, 384
PfoI	TCCNGGA	2 cut(s)	58, 420
PkrI	GCNGC	1 cut(s)	100
PpuMI	RGGWCCY	1 cut(s)	163
Psp5II	RGGWCCY	1 cut(s)	163
Psp6I	CCWGG	2 cut(s)	58, 517
PspGI	CCWGG	2 cut(s)	58, 517
PspN4I	GGNNCC	1 cut(s)	165
PspPI	GGNCC	2 cut(s)	163, 515
PspPPI	RGGWCCY	1 cut(s)	163
PsuI	RGATCY	1 cut(s)	493
PvuII	CAGCTG	1 cut(s)	407
RsaI	GTAC	1 cut(s)	304
RsaNI	GTAC	1 cut(s)	303
SaqAI	TTAA	2 cut(s)	378, 541
SatI	GCNGC	1 cut(s)	99
Sau3AI	GATC	2 cut(s)	46, 493
Sau96I	GGNCC	2 cut(s)	163, 515
ScrFI	CCNGG	3 cut(s)	60, 422, 519
SduI	GDGCHC	1 cut(s)	539
SetI	ASST	5 cut(s)	40, 234, 280, 409, 489
SinI	GGWCC	1 cut(s)	163
Sse9I	AATT	5 cut(s)	102, 178, 390, 400, 416
SsiI	CCGC	3 cut(s)	263, 311, 443
SspMI	CTAG	1 cut(s)	75
StyD4I	CCNGG	3 cut(s)	58, 420, 517
TaaI	ACNGT	2 cut(s)	16, 458
TaqI	TCGA	1 cut(s)	18
TasI	AATT	5 cut(s)	102, 178, 390, 400, 416
TfiI	GAWTC	2 cut(s)	365, 384
Tru1I	TTAA	2 cut(s)	378, 541
Tru9I	TTAA	2 cut(s)	378, 541
TseI	GCWGC	1 cut(s)	98
TspDTI	ATGAA	1 cut(s)	383
VpaK11BI	GGWCC	1 cut(s)	163
XapI	RAATTY	2 cut(s)	390, 416
XspI	CTAG	1 cut(s)	75

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.