Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0002896.1

Orthogroup ID

OG0011824

Physical Location & Seq

Genomic Coordinates Reverse (-)

1964 .. 3827

Gene Structure 1864 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0002896.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1209 bp

atgttctctaaacagaaggttttggaagttgaaagaaaattaagccaacttagaaaacctgcagttaaaagcattcagagtgaagatggtgataccattgattgcattgacatttacaagcagccagcttttgatcatcctgctctcaaaaaccacaccatccagatggcacctagttatgatccaacaaaggagacagagtcgacaatgaccaaattcgaaagattagagaggaagaggaaccaacattcttccatgatggtgacacaaccatggaagaaaaatggaagctgtccacaaggaacaatcccggtgctaagaatcagaaaagagtacctgctccgagctagctcggttgaggcctatggaaggaagaaacatagctcttctcgtcctcatgtttcgcacgagtctagtactagtgacagcaacagaactgtgaacgttctacaagcaaatcactcgaaggcaatattgctcaccgaaggatacagatacaatggagccaaaggagatatcaaagtttggactcctaatgttgattttgacgatgattacactacttctaaagtttgcctcatcaatggtccttattgggcatttgagagtgttgaatctggatgggcggtgaatccgagtgtgtacggagacaggcaaactcgatttatggtgtattggacggtcgatggttcaaagaaaacaggttgctttgatctcacttgtcctggatttgttcaaactagccatgagattgctcttggtgctgcaatttacccaatctctgttccttatggccttccatacgaaatcatcgtctatgtcttcaaggaccccataacaagcaattggtgggtgcaatacggggagaaaatcaacatcggatactggccaccggagctgtttatggcgttgcgtgtccacgcagaagcggttgagtggggaggtgaagtgtatagtgcaagagtgggtactaatccgcacacaaaaacaggaatgggtaatggaaactttcctgatggcatttttggggattcaggggtcattaaaagaatcagaattcatgacaattcagctgaactcaaattcccggaatgggttgagacttatgcggacgagttcaactgttatgatgttgattatgtttccgattaccttgaagatcctgagttctattatggagggcctggccataatcccaagtgcccttaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Neprosin Neprosin_AP

Protein Analysis

402

Amino Acids

45.67

Weight (kDa)

6.2

Isoelectric Point (pI)

27.83

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0011824)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G48230 AT5G19170
fragaria_vesca	FvH4_2g32290
prunus_persica	Prupe.1G415600_v2.0.a1 Prupe.1G415700_v2.0.a1 Prupe.1G415700_v2.0.a1 Prupe.1G415800_v2.0.a1
rosa_chinensis	RchiOBHm_Chr6g0310411
rosa_laevigata	RLG00000010484
rosa_multiflora	Rmu_co8348255.1_g000001 Rmu_sc0002896.1_g000001
rosa_roxburghii	Rroxscaffold_7G00158540
rosa_rugosa	Rorug06G0380000
rosa_samantha	Rh6AG494000 Rh6BG503700 Rh6CG508900 Rh6DG494900
rosa_wichuraiana	Rw2G024720 Rw6G042980

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	2 cut(s)	67, 345
AccB1I	GGYRCC	1 cut(s)	169
AccI	GTMKAC	1 cut(s)	203
AciI	CCGC	4 cut(s)	626, 929, 977, 1109
AclI	AACGTT	1 cut(s)	444
AclWI	GGATC	2 cut(s)	176, 1154
AcoI	YGGCCR	2 cut(s)	887, 1186
AcsI	RAATTY	3 cut(s)	215, 1056, 1082
AfaI	GTAC	4 cut(s)	335, 418, 644, 970
AfiI	CCNNNNNNNGG	2 cut(s)	369, 1093
AgsI	TTSAA	7 cut(s)	32, 614, 693, 737, 826, 1120, 1157
AhlI	ACTAGT	1 cut(s)	419
AjnI	CCWGG	2 cut(s)	724, 1183
AloI	GAACNNNNNNTCC	2 cut(s)	1068, 1100
AluBI	AGCT	7 cut(s)	128, 291, 347, 351, 384, 898, 1073
AluI	AGCT	7 cut(s)	128, 291, 347, 351, 384, 898, 1073
Alw26I	GTCTC	3 cut(s)	188, 642, 1094
AlwI	GGATC	2 cut(s)	176, 1154
AoxI	GGCC	5 cut(s)	360, 793, 887, 1181, 1186
ApeKI	GCWGC	2 cut(s)	121, 764
ApoI	RAATTY	3 cut(s)	215, 1056, 1082
ArsI	GACNNNNNNTTYG	2 cut(s)	798, 830
AspS9I	GGNCC	3 cut(s)	587, 829, 1181
AsuC2I	CCSGG	2 cut(s)	311, 1088
AsuHPI	GGTGA	5 cut(s)	101, 274, 472, 640, 956
AsuII	TTCGAA	1 cut(s)	219
AsuNHI	GCTAGC	1 cut(s)	347
AvaII	GGWCC	2 cut(s)	587, 829
BaeGI	GKGCMC	1 cut(s)	1205
BalI	TGGCCA	2 cut(s)	889, 1188
BanI	GGYRCC	1 cut(s)	169
BauI	CACGAG	1 cut(s)	407
BbsI	GAAGAC	1 cut(s)	814
BbvI	GCAGC	2 cut(s)	133, 751
BccI	CCATC	7 cut(s)	80, 160, 167, 253, 615, 680, 1010
BcgI	CGANNNNNNTGC	2 cut(s)	444, 478
BciT130I	CCWGG	2 cut(s)	726, 1185
BciVI	GTATCC	2 cut(s)	482, 875
BclI	TGATCA	1 cut(s)	133
BcnI	CCSGG	2 cut(s)	311, 1088
BcoDI	GTCTC	3 cut(s)	188, 642, 1094
BcuI	ACTAGT	1 cut(s)	419
BfaI	CTAG	5 cut(s)	174, 348, 414, 420, 741
BfmI	CTRYAG	1 cut(s)	60
BfuAI	ACCTGC	2 cut(s)	67, 345
BfuI	GTATCC	2 cut(s)	482, 875
BisI	GCNGC	2 cut(s)	122, 765
BlsI	GCNGC	2 cut(s)	123, 766
BmcAI	AGTACT	1 cut(s)	418
Bme1390I	CCNGG	4 cut(s)	311, 726, 1088, 1185
Bme18I	GGWCC	2 cut(s)	587, 829
BmgT120I	GGNCC	3 cut(s)	587, 829, 1181
BmiI	GGNNCC	4 cut(s)	171, 242, 505, 831
BmrFI	CCNGG	4 cut(s)	311, 726, 1088, 1185
BmtI	GCTAGC	1 cut(s)	351
BpiI	GAAGAC	1 cut(s)	814
Bpu14I	TTCGAA	1 cut(s)	219
BpuMI	CCSGG	2 cut(s)	311, 1088
BsaJI	CCNNGG	1 cut(s)	272
BsaWI	WCCGGW	1 cut(s)	892
BsaXI	ACNNNNNCTCC	4 cut(s)	185, 215, 933, 963
Bsc4I	CCNNNNNNNGG	2 cut(s)	369, 1093
Bse1I	ACTGG	1 cut(s)	890
BseBI	CCWGG	2 cut(s)	726, 1185
BseDI	CCNNGG	1 cut(s)	272
BseGI	GGATG	3 cut(s)	136, 159, 626
BseLI	CCNNNNNNNGG	2 cut(s)	369, 1093
BseMII	CTCAG	1 cut(s)	1155
BseNI	ACTGG	1 cut(s)	890
BseSI	GKGCMC	1 cut(s)	1205
BseXI	GCAGC	2 cut(s)	133, 751
Bsh1285I	CGRYCG	1 cut(s)	684
BshFI	GGCC	5 cut(s)	362, 795, 889, 1183, 1188
BshNI	GGYRCC	1 cut(s)	169
BsiEI	CGRYCG	1 cut(s)	684
BsiSI	CCGG	3 cut(s)	311, 893, 1088
BslI	CCNNNNNNNGG	2 cut(s)	369, 1093
BsmAI	GTCTC	3 cut(s)	188, 642, 1094
BsmI	GAATGC	1 cut(s)	72
BsnI	GGCC	5 cut(s)	362, 795, 889, 1183, 1188
Bsp119I	TTCGAA	1 cut(s)	219
Bsp1286I	GDGCHC	1 cut(s)	1205
Bsp143I	GATC	4 cut(s)	133, 181, 712, 1159
Bsp19I	CCATGG	1 cut(s)	272
BspACI	CCGC	4 cut(s)	626, 929, 977, 1109
BspANI	GGCC	5 cut(s)	362, 795, 889, 1183, 1188
BspCNI	CTCAG	1 cut(s)	1156
BspHI	TCATGA	1 cut(s)	1060
BspLI	GGNNCC	4 cut(s)	171, 242, 505, 831
BspMAI	CTGCAG	1 cut(s)	64
BspMI	ACCTGC	2 cut(s)	67, 345
BspOI	GCTAGC	1 cut(s)	351
BspPI	GGATC	2 cut(s)	176, 1154
BspQI	GCTCTTC	1 cut(s)	391
BspT104I	TTCGAA	1 cut(s)	219
BspT107I	GGYRCC	1 cut(s)	169
BsrI	ACTGG	1 cut(s)	890
BssECI	CCNNGG	1 cut(s)	272
BssMI	GATC	4 cut(s)	133, 181, 712, 1159
BssSI	CACGAG	1 cut(s)	407
BssT1I	CCWWGG	1 cut(s)	272
Bst2BI	CACGAG	1 cut(s)	407
Bst2UI	CCWGG	2 cut(s)	726, 1185
Bst4CI	ACNGT	3 cut(s)	439, 682, 1124
Bst6I	CTCTTC	2 cut(s)	230, 391
BstBI	TTCGAA	1 cut(s)	219
BstC8I	GCNNGC	2 cut(s)	126, 349
BstDEI	CTNAG	3 cut(s)	50, 317, 1164
BstDSI	CCRYGG	1 cut(s)	272
BstENI	CCTNNNNNAGG	1 cut(s)	367
BstF5I	GGATG	3 cut(s)	136, 159, 626
BstKTI	GATC	4 cut(s)	136, 184, 715, 1162
BstMAI	GTCTC	3 cut(s)	188, 642, 1094
BstMBI	GATC	4 cut(s)	133, 181, 712, 1159
BstMCI	CGRYCG	1 cut(s)	684
BstMWI	GCNNNNNNNGC	2 cut(s)	761, 895
BstNI	CCWGG	2 cut(s)	726, 1185
BstSCI	CCNGG	4 cut(s)	309, 724, 1086, 1183
BstSFI	CTRYAG	1 cut(s)	60
BstSLI	GKGCMC	1 cut(s)	1205
BstV1I	GCAGC	2 cut(s)	133, 751
BstV2I	GAAGAC	1 cut(s)	814
BstX2I	RGATCY	1 cut(s)	1159
BstXI	CCANNNNNNTGG	1 cut(s)	166
BstYI	RGATCY	1 cut(s)	1159
BsuI	GTATCC	2 cut(s)	482, 875
BsuRI	GGCC	5 cut(s)	362, 795, 889, 1183, 1188
BtgI	CCRYGG	1 cut(s)	272
BtsCI	GGATG	3 cut(s)	136, 159, 626
BveI	ACCTGC	2 cut(s)	67, 345
Cac8I	GCNNGC	2 cut(s)	126, 349
CciI	TCATGA	1 cut(s)	1060
Cfr13I	GGNCC	3 cut(s)	587, 829, 1181
Csp6I	GTAC	4 cut(s)	334, 417, 643, 969
CviAII	CATG	5 cut(s)	256, 273, 398, 746, 1061
CviQI	GTAC	4 cut(s)	334, 417, 643, 969
DdeI	CTNAG	3 cut(s)	50, 317, 1164
DpnI	GATC	4 cut(s)	135, 183, 714, 1161
DpnII	GATC	4 cut(s)	133, 181, 712, 1159
EaeI	YGGCCR	2 cut(s)	887, 1186
Eam1104I	CTCTTC	2 cut(s)	230, 391
EarI	CTCTTC	2 cut(s)	230, 391
Eco130I	CCWWGG	1 cut(s)	272
Eco147I	AGGCCT	1 cut(s)	362
Eco32I	GATATC	1 cut(s)	517
Eco47I	GGWCC	2 cut(s)	587, 829
EcoNI	CCTNNNNNAGG	1 cut(s)	367
EcoO109I	RGGNCCY	2 cut(s)	829, 1181
EcoRI	GAATTC	1 cut(s)	1056
EcoRII	CCWGG	2 cut(s)	724, 1183
EcoRV	GATATC	1 cut(s)	517
EcoT14I	CCWWGG	1 cut(s)	272
ErhI	CCWWGG	1 cut(s)	272
FaeI	CATG	5 cut(s)	259, 276, 401, 749, 1064
FatI	CATG	5 cut(s)	255, 272, 397, 745, 1060
FbaI	TGATCA	1 cut(s)	133
FblI	GTMKAC	1 cut(s)	203
Fnu4HI	GCNGC	2 cut(s)	122, 765
FokI	GGATG	3 cut(s)	123, 146, 633
Fsp4HI	GCNGC	2 cut(s)	122, 765
FspBI	CTAG	5 cut(s)	174, 348, 414, 420, 741
GluI	GCNGC	2 cut(s)	122, 765
HaeIII	GGCC	5 cut(s)	362, 795, 889, 1183, 1188
HapII	CCGG	3 cut(s)	311, 893, 1088
Hin1II	CATG	5 cut(s)	259, 276, 401, 749, 1064
HincII	GTYRAC	1 cut(s)	204
HindII	GTYRAC	1 cut(s)	204
HinfI	GANTC	8 cut(s)	200, 321, 410, 529, 614, 631, 1031, 1050
HpaII	CCGG	3 cut(s)	311, 893, 1088
HphI	GGTGA	5 cut(s)	101, 274, 472, 640, 956
Hpy166II	GTNNAC	5 cut(s)	204, 296, 442, 643, 919
Hpy188I	TCNGA	7 cut(s)	78, 326, 344, 636, 881, 1055, 1147
Hpy188III	TCNNGA	5 cut(s)	163, 618, 1013, 1061, 1163
Hpy8I	GTNNAC	5 cut(s)	204, 296, 442, 643, 919
HpyAV	CCTTC	5 cut(s)	10, 363, 460, 479, 806
HpyCH4III	ACNGT	3 cut(s)	439, 682, 1124
HpyCH4IV	ACGT	1 cut(s)	444
HpyCH4V	TGCA	5 cut(s)	62, 105, 767, 856, 959
HpyF10VI	GCNNNNNNNGC	2 cut(s)	761, 895
HpyF3I	CTNAG	3 cut(s)	50, 317, 1164
HpySE526I	ACGT	1 cut(s)	444
Hsp92II	CATG	5 cut(s)	259, 276, 401, 749, 1064
Ksp22I	TGATCA	1 cut(s)	133
Kzo9I	GATC	4 cut(s)	133, 181, 712, 1159
LguI	GCTCTTC	1 cut(s)	391
LmnI	GCTCC	3 cut(s)	345, 503, 895
Lsp1109I	GCAGC	2 cut(s)	133, 751
MaeI	CTAG	5 cut(s)	174, 348, 414, 420, 741
MaeII	ACGT	1 cut(s)	444
MaeIII	GTNAC	2 cut(s)	262, 422
MalI	GATC	4 cut(s)	135, 183, 714, 1161
MboI	GATC	4 cut(s)	133, 181, 712, 1159
MboII	GAAGA	8 cut(s)	95, 243, 247, 289, 378, 385, 814, 1169
MfeI	CAATTG	1 cut(s)	844
MflI	RGATCY	1 cut(s)	1159
MhlI	GDGCHC	1 cut(s)	1205
MlsI	TGGCCA	2 cut(s)	889, 1188
MluCI	AATT	7 cut(s)	38, 215, 768, 844, 1056, 1066, 1082
MluNI	TGGCCA	2 cut(s)	889, 1188
MlyI	GAGTC	3 cut(s)	209, 419, 523
MmeI	TCCRAC	1 cut(s)	209
MnlI	CCTC	7 cut(s)	225, 231, 352, 405, 587, 935, 1172
Mox20I	TGGCCA	2 cut(s)	889, 1188
MscI	TGGCCA	2 cut(s)	889, 1188
MseI	TTAA	4 cut(s)	41, 66, 1044, 1207
MslI	CAYNNNNRTG	3 cut(s)	164, 260, 271
Msp20I	TGGCCA	2 cut(s)	889, 1188
MspA1I	CMGCKG	1 cut(s)	1073
MspI	CCGG	3 cut(s)	311, 893, 1088
MspR9I	CCNGG	4 cut(s)	311, 726, 1088, 1185
MunI	CAATTG	1 cut(s)	844
Mva1269I	GAATGC	1 cut(s)	72
MvaI	CCWGG	2 cut(s)	726, 1185
MwoI	GCNNNNNNNGC	2 cut(s)	761, 895
NciI	CCSGG	2 cut(s)	311, 1088
NcoI	CCATGG	1 cut(s)	272
NdeII	GATC	4 cut(s)	133, 181, 712, 1159
NheI	GCTAGC	1 cut(s)	347
NlaIII	CATG	5 cut(s)	259, 276, 401, 749, 1064
NlaIV	GGNNCC	4 cut(s)	171, 242, 505, 831
NmuCI	GTSAC	2 cut(s)	262, 422
NspV	TTCGAA	1 cut(s)	219
PagI	TCATGA	1 cut(s)	1060
PceI	AGGCCT	1 cut(s)	362
PciSI	GCTCTTC	1 cut(s)	391
PcsI	WCGNNNNNNNCGW	1 cut(s)	810
PctI	GAATGC	1 cut(s)	72
PfeI	GAWTC	5 cut(s)	321, 614, 631, 1031, 1050
PflFI	GACNNNGTC	1 cut(s)	199
PfoI	TCCNGGA	2 cut(s)	724, 1086
PkrI	GCNGC	2 cut(s)	123, 766
PleI	GAGTC	3 cut(s)	208, 418, 523
PpsI	GAGTC	3 cut(s)	208, 418, 523
PpuMI	RGGWCCY	1 cut(s)	829
Psp1406I	AACGTT	1 cut(s)	444
Psp5II	RGGWCCY	1 cut(s)	829
Psp6I	CCWGG	2 cut(s)	724, 1183
PspGI	CCWGG	2 cut(s)	724, 1183
PspN4I	GGNNCC	4 cut(s)	171, 242, 505, 831
PspPI	GGNCC	3 cut(s)	587, 829, 1181
PspPPI	RGGWCCY	1 cut(s)	829
PstI	CTGCAG	1 cut(s)	64
PsuI	RGATCY	1 cut(s)	1159
PsyI	GACNNNGTC	1 cut(s)	199
PvuII	CAGCTG	1 cut(s)	1073
RsaI	GTAC	4 cut(s)	335, 418, 644, 970
RsaNI	GTAC	4 cut(s)	334, 417, 643, 969
RseI	CAYNNNNRTG	3 cut(s)	164, 260, 271
SalI	GTCGAC	1 cut(s)	202
SapI	GCTCTTC	1 cut(s)	391
SaqAI	TTAA	4 cut(s)	41, 66, 1044, 1207
SatI	GCNGC	2 cut(s)	122, 765
Sau3AI	GATC	4 cut(s)	133, 181, 712, 1159
Sau96I	GGNCC	3 cut(s)	587, 829, 1181
ScaI	AGTACT	1 cut(s)	418
SchI	GAGTC	3 cut(s)	209, 419, 523
ScrFI	CCNGG	4 cut(s)	311, 726, 1088, 1185
SduI	GDGCHC	1 cut(s)	1205
SfcI	CTRYAG	1 cut(s)	60
SfuI	TTCGAA	1 cut(s)	219
SinI	GGWCC	2 cut(s)	587, 829
SmiMI	CAYNNNNRTG	3 cut(s)	164, 260, 271
SpeI	ACTAGT	1 cut(s)	419
Sse9I	AATT	7 cut(s)	38, 215, 768, 844, 1056, 1066, 1082
SseBI	AGGCCT	1 cut(s)	362
SsiI	CCGC	4 cut(s)	626, 929, 977, 1109
SspI	AATATT	1 cut(s)	474
SspMI	CTAG	5 cut(s)	174, 348, 414, 420, 741
StuI	AGGCCT	1 cut(s)	362
StyD4I	CCNGG	4 cut(s)	309, 724, 1086, 1183
StyI	CCWWGG	1 cut(s)	272
TaaI	ACNGT	3 cut(s)	439, 682, 1124
TaiI	ACGT	1 cut(s)	447
TaqI	TCGA	5 cut(s)	203, 219, 464, 661, 684
TasI	AATT	7 cut(s)	38, 215, 768, 844, 1056, 1066, 1082
TatI	WGTACW	1 cut(s)	416
TfiI	GAWTC	5 cut(s)	321, 614, 631, 1031, 1050
Tru1I	TTAA	4 cut(s)	41, 66, 1044, 1207
Tru9I	TTAA	4 cut(s)	41, 66, 1044, 1207
TseFI	GTSAC	2 cut(s)	262, 422
TseI	GCWGC	2 cut(s)	121, 764
Tsp45I	GTSAC	2 cut(s)	262, 422
TspDTI	ATGAA	1 cut(s)	1049
TspGWI	ACGGA	1 cut(s)	660
Tth111I	GACNNNGTC	1 cut(s)	199
VpaK11BI	GGWCC	2 cut(s)	587, 829
XagI	CCTNNNNNAGG	1 cut(s)	367
XapI	RAATTY	3 cut(s)	215, 1056, 1082
XmiI	GTMKAC	1 cut(s)	203
XspI	CTAG	5 cut(s)	174, 348, 414, 420, 741
ZrmI	AGTACT	1 cut(s)	418

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.